Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47239 * 89.99935 * 9 7 5 11 11 H 1.48495 * 109.47323 * 209.99675 * 9 7 5 12 12 H 1.48505 * 109.47112 * 330.00112 * 9 7 5 13 13 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 14 14 C 1.46903 * 110.99908 * 274.99684 * 13 2 1 15 15 C 1.52996 * 109.47400 * 179.97438 * 14 13 2 16 16 H 1.09006 * 110.01569 * 54.29831 * 15 14 13 17 17 C 1.54271 * 110.03523 * 292.90810 * 15 14 13 18 18 C 1.54885 * 104.19784 * 217.10459 * 17 15 14 19 19 C 1.54885 * 102.74832 * 37.93923 * 18 17 15 20 20 C 1.53877 * 110.03570 * 175.68803 * 15 14 13 21 21 H 1.08997 * 110.03605 * 238.56764 * 20 15 14 22 22 C 1.52999 * 110.03022 * 0.02562 * 20 15 14 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 27 27 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 28 28 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 29 29 H 1.00895 * 111.00219 * 151.04779 * 13 2 1 30 30 H 1.09003 * 109.46856 * 300.00136 * 14 13 2 31 31 H 1.09001 * 109.47072 * 60.00127 * 14 13 2 32 32 H 1.08996 * 110.48001 * 335.78491 * 17 15 14 33 33 H 1.08997 * 110.48395 * 98.42101 * 17 15 14 34 34 H 1.08996 * 110.75380 * 156.25190 * 18 17 15 35 35 H 1.09001 * 110.75678 * 279.62681 * 18 17 15 36 36 H 1.09005 * 110.48515 * 80.73586 * 19 18 17 37 37 H 1.09006 * 110.48947 * 203.37652 * 19 18 17 38 38 H 1.09001 * 109.47079 * 59.99623 * 22 20 15 39 39 H 1.08993 * 109.47204 * 179.97438 * 22 20 15 40 40 H 1.09005 * 109.47096 * 299.99531 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8371 -3.3000 9 14 6.0919 -1.0605 -2.4374 10 1 6.7008 -2.2131 -1.7260 11 1 6.5288 -1.0679 -3.8566 12 1 6.5261 0.2048 -1.7924 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5950 -0.5332 3.5744 16 1 3.5450 -1.0162 3.3455 17 6 1.5592 -1.5875 4.0166 18 6 1.6321 -1.5662 5.5636 19 6 1.8299 -0.0621 5.8758 20 6 2.7684 0.4369 4.7563 21 1 3.8022 0.4240 5.1015 22 6 2.3733 1.8534 4.3339 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2617 -2.1370 28 1 4.0606 -2.2439 -4.0354 29 1 2.9172 -1.1205 1.0287 30 1 2.7589 1.0461 2.1181 31 1 1.0871 0.6163 2.5525 32 1 0.5617 -1.3076 3.6778 33 1 1.8303 -2.5719 3.6353 34 1 0.7024 -1.9322 5.9991 35 1 2.4820 -2.1493 5.9183 36 1 0.8760 0.4641 5.8373 37 1 2.2985 0.0666 6.8515 38 1 1.3311 1.8600 4.0148 39 1 2.4990 2.5323 5.1772 40 1 3.0080 2.1768 3.5089 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695860498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -53.877811 kcal Electronic energy + Delta-G solvation = -16152.425657 eV Core-core repulsion = 13771.664706 eV Total energy + Delta-G solvation = -2380.760951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05887 -37.76990 -34.81453 -32.78652 -32.01751 -29.37026 -29.06310 -25.86563 -25.33598 -24.12977 -21.53589 -21.10492 -19.44022 -18.52021 -17.20254 -16.73469 -16.18146 -15.86429 -15.45903 -14.95488 -14.55308 -14.41921 -13.84834 -13.60183 -13.40571 -13.09993 -13.04970 -12.79024 -12.73920 -12.57431 -12.35819 -12.06958 -11.78523 -11.65607 -11.52981 -11.49968 -11.36079 -11.11378 -11.03198 -10.95586 -10.58238 -9.09811 -8.20307 -6.30848 1.38345 1.38970 1.49423 2.39081 3.11164 3.43506 3.75833 3.81090 3.93808 4.28547 4.38928 4.48604 4.52269 4.58911 4.67212 4.68059 4.73393 4.77899 4.82179 4.92029 4.98780 5.02234 5.09611 5.14199 5.20353 5.22645 5.32163 5.35308 5.38372 5.47963 5.49903 5.57145 5.60534 5.63806 5.83764 6.20635 6.47395 6.68944 6.84203 7.37840 8.91416 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029396 B = 0.006410 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.289282 B = 4366.861233 C = 4736.984961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.096 3.904 3 H 0.020 0.980 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.684 5.684 14 C 0.070 3.930 15 C -0.087 4.087 16 H 0.055 0.945 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.090 4.090 21 H 0.071 0.929 22 C -0.146 4.146 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.048 0.952 26 H -0.003 1.003 27 H -0.006 1.006 28 H 0.263 0.737 29 H 0.339 0.661 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 4.413 17.584 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.014 4.014 3 H 0.038 0.962 4 C -0.010 4.010 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.106 4.106 16 H 0.073 0.927 17 C -0.141 4.141 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.109 4.109 21 H 0.090 0.910 22 C -0.203 4.203 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.015 0.985 27 H 0.012 0.988 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.584 4.084 17.584 18.405 hybrid contribution 1.720 0.360 -1.049 2.047 sum -1.863 4.444 16.535 17.223 Atomic orbital electron populations 1.21691 0.94572 1.01343 1.00773 1.21406 0.95066 0.94590 0.90365 0.96200 1.19136 0.94843 0.94700 0.92292 1.21497 0.93281 1.34132 1.08245 0.92690 1.25890 1.03373 0.94815 0.95306 1.70099 1.37532 1.36681 1.12714 0.85517 0.79790 0.78796 0.77340 1.19739 1.20855 1.19117 1.60602 1.33661 1.32924 1.04442 1.22242 0.99860 0.93337 0.90398 1.21791 0.98532 0.96192 0.94050 0.92683 1.22212 0.98515 0.97888 0.95490 1.22515 1.01832 0.96732 0.95038 1.22437 0.99317 0.95480 0.97818 1.21768 0.99936 0.94612 0.94569 0.91027 1.21942 1.01342 0.95934 1.01077 0.92128 0.93022 0.93238 0.98476 0.98806 0.92810 0.84237 0.96437 0.91003 0.92188 0.93029 0.90851 0.91512 0.91270 0.90647 0.92514 0.91703 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.41 71.98 0.68 -3.88 16 2 C 0.10 4.08 2.59 44.92 0.12 4.19 16 3 H 0.02 0.88 7.80 -2.39 -0.02 0.86 16 4 C 0.03 1.48 4.57 29.85 0.14 1.61 16 5 C -0.53 -30.07 8.12 25.60 0.21 -29.87 16 6 H 0.05 2.99 7.49 -2.91 -0.02 2.97 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -56.80 13.29 21.44 0.28 -56.52 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.68 -26.60 6.11 -491.57 -3.00 -29.61 16 14 C 0.07 2.21 3.58 86.30 0.31 2.52 16 15 C -0.09 -2.33 3.09 -10.07 -0.03 -2.36 16 16 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 17 C -0.10 -2.62 6.17 31.67 0.20 -2.43 16 18 C -0.12 -2.41 6.91 31.88 0.22 -2.19 16 19 C -0.11 -2.03 6.36 31.70 0.20 -1.83 16 20 C -0.09 -1.93 3.51 -10.03 -0.04 -1.96 16 21 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 22 C -0.15 -3.02 7.89 71.98 0.57 -2.45 16 23 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.00 -0.19 8.14 -2.39 -0.02 -0.20 16 27 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 28 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 29 H 0.34 14.63 7.21 -89.70 -0.65 13.99 16 30 H 0.02 0.58 6.38 -2.39 -0.02 0.57 16 31 H 0.07 2.14 6.18 -2.39 -0.01 2.12 16 32 H 0.06 1.61 7.77 -2.39 -0.02 1.59 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.20 7.84 -2.38 -0.02 1.18 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.19 6.84 -2.39 -0.02 1.17 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.07 6.63 -2.38 -0.02 1.06 16 Total: -1.00 -61.18 307.38 2.67 -58.51 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.33 Total: 19.09 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 3.03 Total: -37.93 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.72 Total: -86.13 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.18 2.67 -58.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.633 kcal (2) G-P(sol) polarization free energy of solvation -61.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds