Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46622 * 2 1 4 4 H 1.09001 * 109.47117 * 304.03779 * 3 2 1 5 5 C 1.50701 * 109.46888 * 184.04609 * 3 2 1 6 6 H 1.08005 * 119.99739 * 244.64569 * 5 3 2 7 7 C 1.37878 * 120.00220 * 64.64523 * 5 3 2 8 8 N 1.31515 * 120.00049 * 195.59306 * 7 5 3 9 9 Si 1.86795 * 119.99971 * 15.59307 * 7 5 3 10 10 H 1.48508 * 109.47088 * 90.16781 * 9 7 5 11 11 H 1.48497 * 109.47043 * 210.16434 * 9 7 5 12 12 H 1.48496 * 109.47213 * 330.16875 * 9 7 5 13 13 N 1.46899 * 109.47575 * 64.04311 * 3 2 1 14 14 C 1.46898 * 111.00148 * 192.38001 * 13 3 2 15 15 C 1.52999 * 109.47076 * 75.53267 * 14 13 3 16 16 C 1.46898 * 111.00016 * 68.42321 * 13 3 2 17 17 C 1.52995 * 109.47553 * 195.70781 * 16 13 3 18 18 H 1.09003 * 115.54882 * 29.27735 * 17 16 13 19 19 C 1.52998 * 117.50184 * 243.61538 * 17 16 13 20 20 C 1.52998 * 117.50055 * 174.98806 * 17 16 13 21 21 H 1.08992 * 117.49751 * 359.97438 * 20 17 16 22 22 C 1.53001 * 117.49805 * 214.97765 * 20 17 16 23 23 H 1.08999 * 109.46697 * 174.96416 * 1 2 3 24 24 H 1.09000 * 109.47091 * 294.96015 * 1 2 3 25 25 H 1.08995 * 109.47421 * 54.96303 * 1 2 3 26 26 H 1.08996 * 109.47179 * 119.99456 * 2 1 3 27 27 H 1.08998 * 109.46954 * 240.00130 * 2 1 3 28 28 H 0.96999 * 120.00128 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47186 * 195.53590 * 14 13 3 30 30 H 1.08999 * 109.46813 * 315.53491 * 14 13 3 31 31 H 1.09005 * 109.47152 * 64.61430 * 15 14 13 32 32 H 1.09001 * 109.47013 * 184.61002 * 15 14 13 33 33 H 1.08994 * 109.47706 * 304.61815 * 15 14 13 34 34 H 1.09003 * 109.47281 * 315.71602 * 16 13 3 35 35 H 1.09009 * 109.46745 * 75.70655 * 16 13 3 36 36 H 1.09005 * 117.49722 * 359.97438 * 19 17 16 37 37 H 1.08995 * 117.50335 * 144.99597 * 19 17 16 38 38 H 1.09003 * 109.46985 * 60.00230 * 22 20 17 39 39 H 1.09002 * 109.47245 * 180.02562 * 22 20 17 40 40 H 1.09000 * 109.47429 * 300.00292 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6186 1.9768 -0.8516 5 6 3.5436 1.4438 -0.1003 6 1 4.1389 1.8248 0.7164 7 6 4.1593 0.9586 -1.2345 8 7 5.4426 0.6715 -1.2143 9 14 3.1709 0.7090 -2.7997 10 1 3.2113 1.9503 -3.6139 11 1 3.7527 -0.4132 -3.5789 12 1 1.7628 0.3917 -2.4506 13 7 1.6316 2.1063 1.2452 14 6 1.8412 3.5579 1.1613 15 6 0.7491 4.1812 0.2896 16 6 2.3385 1.5383 2.4009 17 6 1.6283 1.9572 3.6896 18 1 0.5553 2.1276 3.6010 19 6 2.4049 2.8385 4.6699 20 6 2.1443 1.3683 5.0041 21 1 2.9895 0.6822 4.9507 22 6 1.1147 1.0634 6.0940 23 1 -0.3633 -1.0237 -0.0902 24 1 -0.3633 0.4337 0.9317 25 1 -0.3634 0.5899 -0.8414 26 1 1.8934 -0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 5.8759 0.3304 -2.0124 29 1 1.7985 3.9896 2.1612 30 1 2.8173 3.7590 0.7199 31 1 -0.2195 4.0512 0.7724 32 1 0.9506 5.2446 0.1600 33 1 0.7381 3.6921 -0.6843 34 1 2.3432 0.4509 2.3254 35 1 3.3647 1.9058 2.4156 36 1 3.4221 3.1196 4.3969 37 1 1.8429 3.5887 5.2262 38 1 0.3915 0.3395 5.7183 39 1 1.6210 0.6521 6.9673 40 1 0.5981 1.9818 6.3729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698352069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = 14.686628 kcal Electronic energy + Delta-G solvation = -16638.014920 eV Core-core repulsion = 14260.227147 eV Total energy + Delta-G solvation = -2377.787774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.39916 -36.57998 -32.95449 -31.81732 -30.06176 -28.45691 -27.00466 -24.60817 -22.88023 -21.20963 -20.82970 -19.86402 -18.82948 -16.71854 -15.29309 -14.93016 -14.58351 -13.87477 -13.72841 -13.45754 -12.98803 -12.77820 -12.64081 -12.41092 -12.02006 -11.76000 -11.58233 -11.30959 -11.23680 -10.94323 -10.79765 -10.70671 -10.45995 -10.39688 -10.00769 -9.76859 -9.60403 -9.45987 -9.14332 -9.08563 -8.44382 -7.08995 -6.12768 -4.07790 3.27821 3.37593 3.41410 4.10165 4.41492 4.77276 5.15194 5.19817 5.23976 5.37647 5.52964 5.80845 5.91451 5.93050 5.97574 6.03480 6.10727 6.12811 6.15295 6.18031 6.23352 6.36561 6.44300 6.50187 6.54188 6.58799 6.71581 6.79504 6.83452 6.91331 6.96570 7.09493 7.27874 7.35022 7.63875 8.20232 8.27031 8.48506 8.94104 9.55109 11.00109 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.008474 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.448165 B = 3303.320450 C = 3412.161079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.184 3.816 4 H 0.035 0.965 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.525 5.525 14 C 0.052 3.948 15 C -0.140 4.140 16 C 0.094 3.906 17 C -0.130 4.130 18 H 0.104 0.896 19 C -0.184 4.184 20 C -0.162 4.162 21 H 0.100 0.900 22 C -0.117 4.117 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 2.329 8.046 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.687 3.313 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.173 1.173 13 N -0.248 5.248 14 C -0.076 4.076 15 C -0.198 4.198 16 C -0.034 4.034 17 C -0.148 4.148 18 H 0.122 0.878 19 C -0.221 4.221 20 C -0.180 4.180 21 H 0.118 0.882 22 C -0.174 4.174 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.150 2.176 7.996 12.345 hybrid contribution 0.689 0.001 -1.109 1.305 sum -8.461 2.177 6.887 11.125 Atomic orbital electron populations 1.21707 0.97842 0.98872 1.01329 1.21917 0.93502 0.99118 1.00745 1.19647 0.94077 0.90613 0.88053 0.94772 1.21614 0.90670 1.42666 1.03771 0.90797 1.24932 0.94623 0.94023 0.98820 1.70001 1.10884 1.43100 1.28925 0.87254 0.82222 0.77875 0.83979 1.20720 1.21523 1.17252 1.62303 1.56157 1.02578 1.03789 1.21918 0.97806 0.89355 0.98554 1.21719 0.98941 0.98731 1.00410 1.21485 0.94701 0.99749 0.87470 1.22567 0.99524 1.02305 0.90433 0.87809 1.23178 1.01498 0.92913 1.04510 1.22344 1.01576 0.96532 0.97594 0.88161 1.21312 0.97854 1.01162 0.97115 0.95133 0.92372 0.94198 0.92821 0.92966 0.92786 0.92538 0.93731 0.93186 0.93686 0.92781 0.90690 0.94217 0.89238 0.89636 0.92399 0.92737 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.73 37.16 0.36 -2.23 16 2 C -0.11 -2.49 4.68 -26.73 -0.13 -2.61 16 3 C 0.18 4.22 1.16 -68.86 -0.08 4.14 16 4 H 0.03 0.82 5.20 -51.93 -0.27 0.55 16 5 C -0.55 -14.83 7.46 -34.44 -0.26 -15.09 16 6 H 0.07 2.19 6.36 -52.48 -0.33 1.85 16 7 C 0.08 2.23 5.33 -17.82 -0.10 2.14 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.86 21.03 25.81 -169.99 -4.39 16.64 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.25 -5.73 5.47 56.52 0.31 -5.42 16 13 N -0.52 -10.52 3.83 -228.04 -0.87 -11.39 16 14 C 0.05 0.98 5.44 -3.83 -0.02 0.96 16 15 C -0.14 -2.34 10.08 37.16 0.37 -1.97 16 16 C 0.09 1.82 4.29 -3.83 -0.02 1.80 16 17 C -0.13 -2.04 4.68 -90.62 -0.42 -2.46 16 18 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 19 C -0.18 -2.60 9.65 -26.73 -0.26 -2.85 16 20 C -0.16 -2.24 6.13 -90.62 -0.56 -2.80 16 21 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 22 C -0.12 -1.34 10.19 37.16 0.38 -0.96 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.16 6.25 -51.93 -0.32 0.84 16 27 H 0.05 1.20 4.92 -51.93 -0.26 0.94 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.06 0.97 6.97 -51.93 -0.36 0.61 16 30 H 0.04 0.96 7.17 -51.93 -0.37 0.59 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.98 6.64 -51.93 -0.35 0.63 16 34 H 0.07 1.54 6.03 -51.93 -0.31 1.22 16 35 H 0.04 0.86 6.32 -51.92 -0.33 0.53 16 36 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 37 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -28.21 303.25 -7.80 -36.01 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.17 Total: 2.20 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.72 Total: -21.94 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.10 Total: -37.48 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.39 Total: 16.64 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.21 -7.80 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698352069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.695 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds