Wall clock time and date at job start Mon Mar 30 2020 02:42:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46622 * 2 1
4 4 H 1.09001 * 109.47117 * 304.03779 * 3 2 1
5 5 C 1.50701 * 109.46888 * 184.04609 * 3 2 1
6 6 H 1.08005 * 119.99739 * 244.64569 * 5 3 2
7 7 C 1.37878 * 120.00220 * 64.64523 * 5 3 2
8 8 N 1.31515 * 120.00049 * 195.59306 * 7 5 3
9 9 Si 1.86795 * 119.99971 * 15.59307 * 7 5 3
10 10 H 1.48508 * 109.47088 * 90.16781 * 9 7 5
11 11 H 1.48497 * 109.47043 * 210.16434 * 9 7 5
12 12 H 1.48496 * 109.47213 * 330.16875 * 9 7 5
13 13 N 1.46899 * 109.47575 * 64.04311 * 3 2 1
14 14 C 1.46898 * 111.00148 * 192.38001 * 13 3 2
15 15 C 1.52999 * 109.47076 * 75.53267 * 14 13 3
16 16 C 1.46898 * 111.00016 * 68.42321 * 13 3 2
17 17 C 1.52995 * 109.47553 * 195.70781 * 16 13 3
18 18 H 1.09003 * 115.54882 * 29.27735 * 17 16 13
19 19 C 1.52998 * 117.50184 * 243.61538 * 17 16 13
20 20 C 1.52998 * 117.50055 * 174.98806 * 17 16 13
21 21 H 1.08992 * 117.49751 * 359.97438 * 20 17 16
22 22 C 1.53001 * 117.49805 * 214.97765 * 20 17 16
23 23 H 1.08999 * 109.46697 * 174.96416 * 1 2 3
24 24 H 1.09000 * 109.47091 * 294.96015 * 1 2 3
25 25 H 1.08995 * 109.47421 * 54.96303 * 1 2 3
26 26 H 1.08996 * 109.47179 * 119.99456 * 2 1 3
27 27 H 1.08998 * 109.46954 * 240.00130 * 2 1 3
28 28 H 0.96999 * 120.00128 * 180.02562 * 8 7 5
29 29 H 1.09002 * 109.47186 * 195.53590 * 14 13 3
30 30 H 1.08999 * 109.46813 * 315.53491 * 14 13 3
31 31 H 1.09005 * 109.47152 * 64.61430 * 15 14 13
32 32 H 1.09001 * 109.47013 * 184.61002 * 15 14 13
33 33 H 1.08994 * 109.47706 * 304.61815 * 15 14 13
34 34 H 1.09003 * 109.47281 * 315.71602 * 16 13 3
35 35 H 1.09009 * 109.46745 * 75.70655 * 16 13 3
36 36 H 1.09005 * 117.49722 * 359.97438 * 19 17 16
37 37 H 1.08995 * 117.50335 * 144.99597 * 19 17 16
38 38 H 1.09003 * 109.46985 * 60.00230 * 22 20 17
39 39 H 1.09002 * 109.47245 * 180.02562 * 22 20 17
40 40 H 1.09000 * 109.47429 * 300.00292 * 22 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6186 1.9768 -0.8516
5 6 3.5436 1.4438 -0.1003
6 1 4.1389 1.8248 0.7164
7 6 4.1593 0.9586 -1.2345
8 7 5.4426 0.6715 -1.2143
9 14 3.1709 0.7090 -2.7997
10 1 3.2113 1.9503 -3.6139
11 1 3.7527 -0.4132 -3.5789
12 1 1.7628 0.3917 -2.4506
13 7 1.6316 2.1063 1.2452
14 6 1.8412 3.5579 1.1613
15 6 0.7491 4.1812 0.2896
16 6 2.3385 1.5383 2.4009
17 6 1.6283 1.9572 3.6896
18 1 0.5553 2.1276 3.6010
19 6 2.4049 2.8385 4.6699
20 6 2.1443 1.3683 5.0041
21 1 2.9895 0.6822 4.9507
22 6 1.1147 1.0634 6.0940
23 1 -0.3633 -1.0237 -0.0902
24 1 -0.3633 0.4337 0.9317
25 1 -0.3634 0.5899 -0.8414
26 1 1.8934 -0.5137 0.8900
27 1 1.8933 -0.5138 -0.8900
28 1 5.8759 0.3304 -2.0124
29 1 1.7985 3.9896 2.1612
30 1 2.8173 3.7590 0.7199
31 1 -0.2195 4.0512 0.7724
32 1 0.9506 5.2446 0.1600
33 1 0.7381 3.6921 -0.6843
34 1 2.3432 0.4509 2.3254
35 1 3.3647 1.9058 2.4156
36 1 3.4221 3.1196 4.3969
37 1 1.8429 3.5887 5.2262
38 1 0.3915 0.3395 5.7183
39 1 1.6210 0.6521 6.9673
40 1 0.5981 1.9818 6.3729
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000698352069.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:32
Heat of formation + Delta-G solvation = 14.686628 kcal
Electronic energy + Delta-G solvation = -16638.014920 eV
Core-core repulsion = 14260.227147 eV
Total energy + Delta-G solvation = -2377.787774 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-38.39916 -36.57998 -32.95449 -31.81732 -30.06176 -28.45691 -27.00466 -24.60817
-22.88023 -21.20963 -20.82970 -19.86402 -18.82948 -16.71854 -15.29309 -14.93016
-14.58351 -13.87477 -13.72841 -13.45754 -12.98803 -12.77820 -12.64081 -12.41092
-12.02006 -11.76000 -11.58233 -11.30959 -11.23680 -10.94323 -10.79765 -10.70671
-10.45995 -10.39688 -10.00769 -9.76859 -9.60403 -9.45987 -9.14332 -9.08563
-8.44382 -7.08995 -6.12768 -4.07790 3.27821 3.37593 3.41410 4.10165
4.41492 4.77276 5.15194 5.19817 5.23976 5.37647 5.52964 5.80845
5.91451 5.93050 5.97574 6.03480 6.10727 6.12811 6.15295 6.18031
6.23352 6.36561 6.44300 6.50187 6.54188 6.58799 6.71581 6.79504
6.83452 6.91331 6.96570 7.09493 7.27874 7.35022 7.63875 8.20232
8.27031 8.48506 8.94104 9.55109 11.00109
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.027140 B = 0.008474 C = 0.008204
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1031.448165 B = 3303.320450 C = 3412.161079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.115 4.115
3 C 0.184 3.816
4 H 0.035 0.965
5 C -0.549 4.549
6 H 0.074 0.926
7 C 0.079 3.921
8 N -0.892 5.892
9 Si 0.860 3.140
10 H -0.281 1.281
11 H -0.289 1.289
12 H -0.249 1.249
13 N -0.525 5.525
14 C 0.052 3.948
15 C -0.140 4.140
16 C 0.094 3.906
17 C -0.130 4.130
18 H 0.104 0.896
19 C -0.184 4.184
20 C -0.162 4.162
21 H 0.100 0.900
22 C -0.117 4.117
23 H 0.030 0.970
24 H 0.057 0.943
25 H 0.039 0.961
26 H 0.053 0.947
27 H 0.052 0.948
28 H 0.262 0.738
29 H 0.056 0.944
30 H 0.044 0.956
31 H 0.049 0.951
32 H 0.044 0.956
33 H 0.053 0.947
34 H 0.075 0.925
35 H 0.040 0.960
36 H 0.089 0.911
37 H 0.085 0.915
38 H 0.057 0.943
39 H 0.054 0.946
40 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.798 2.329 8.046 12.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.153 4.153
3 C 0.076 3.924
4 H 0.052 0.948
5 C -0.587 4.587
6 H 0.092 0.908
7 C -0.124 4.124
8 N -0.529 5.529
9 Si 0.687 3.313
10 H -0.207 1.207
11 H -0.215 1.215
12 H -0.173 1.173
13 N -0.248 5.248
14 C -0.076 4.076
15 C -0.198 4.198
16 C -0.034 4.034
17 C -0.148 4.148
18 H 0.122 0.878
19 C -0.221 4.221
20 C -0.180 4.180
21 H 0.118 0.882
22 C -0.174 4.174
23 H 0.049 0.951
24 H 0.076 0.924
25 H 0.058 0.942
26 H 0.072 0.928
27 H 0.070 0.930
28 H 0.072 0.928
29 H 0.075 0.925
30 H 0.063 0.937
31 H 0.068 0.932
32 H 0.063 0.937
33 H 0.072 0.928
34 H 0.093 0.907
35 H 0.058 0.942
36 H 0.108 0.892
37 H 0.104 0.896
38 H 0.076 0.924
39 H 0.073 0.927
40 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -9.150 2.176 7.996 12.345
hybrid contribution 0.689 0.001 -1.109 1.305
sum -8.461 2.177 6.887 11.125
Atomic orbital electron populations
1.21707 0.97842 0.98872 1.01329 1.21917 0.93502 0.99118 1.00745
1.19647 0.94077 0.90613 0.88053 0.94772 1.21614 0.90670 1.42666
1.03771 0.90797 1.24932 0.94623 0.94023 0.98820 1.70001 1.10884
1.43100 1.28925 0.87254 0.82222 0.77875 0.83979 1.20720 1.21523
1.17252 1.62303 1.56157 1.02578 1.03789 1.21918 0.97806 0.89355
0.98554 1.21719 0.98941 0.98731 1.00410 1.21485 0.94701 0.99749
0.87470 1.22567 0.99524 1.02305 0.90433 0.87809 1.23178 1.01498
0.92913 1.04510 1.22344 1.01576 0.96532 0.97594 0.88161 1.21312
0.97854 1.01162 0.97115 0.95133 0.92372 0.94198 0.92821 0.92966
0.92786 0.92538 0.93731 0.93186 0.93686 0.92781 0.90690 0.94217
0.89238 0.89636 0.92399 0.92737 0.92988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.59 9.73 37.16 0.36 -2.23 16
2 C -0.11 -2.49 4.68 -26.73 -0.13 -2.61 16
3 C 0.18 4.22 1.16 -68.86 -0.08 4.14 16
4 H 0.03 0.82 5.20 -51.93 -0.27 0.55 16
5 C -0.55 -14.83 7.46 -34.44 -0.26 -15.09 16
6 H 0.07 2.19 6.36 -52.48 -0.33 1.85 16
7 C 0.08 2.23 5.33 -17.82 -0.10 2.14 16
8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16
9 Si 0.86 21.03 25.81 -169.99 -4.39 16.64 16
10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
12 H -0.25 -5.73 5.47 56.52 0.31 -5.42 16
13 N -0.52 -10.52 3.83 -228.04 -0.87 -11.39 16
14 C 0.05 0.98 5.44 -3.83 -0.02 0.96 16
15 C -0.14 -2.34 10.08 37.16 0.37 -1.97 16
16 C 0.09 1.82 4.29 -3.83 -0.02 1.80 16
17 C -0.13 -2.04 4.68 -90.62 -0.42 -2.46 16
18 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16
19 C -0.18 -2.60 9.65 -26.73 -0.26 -2.85 16
20 C -0.16 -2.24 6.13 -90.62 -0.56 -2.80 16
21 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16
22 C -0.12 -1.34 10.19 37.16 0.38 -0.96 16
23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
24 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16
25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
26 H 0.05 1.16 6.25 -51.93 -0.32 0.84 16
27 H 0.05 1.20 4.92 -51.93 -0.26 0.94 16
28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
29 H 0.06 0.97 6.97 -51.93 -0.36 0.61 16
30 H 0.04 0.96 7.17 -51.93 -0.37 0.59 16
31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.05 0.98 6.64 -51.93 -0.35 0.63 16
34 H 0.07 1.54 6.03 -51.93 -0.31 1.22 16
35 H 0.04 0.86 6.32 -51.92 -0.33 0.53 16
36 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16
37 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16
38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16
LS Contribution 303.25 15.07 4.57 4.57
Total: -1.00 -28.21 303.25 -7.80 -36.01
By element:
Atomic # 1 Polarization: 9.37 SS G_CDS: -7.17 Total: 2.20 kcal
Atomic # 6 Polarization: -21.22 SS G_CDS: -0.72 Total: -21.94 kcal
Atomic # 7 Polarization: -37.38 SS G_CDS: -0.10 Total: -37.48 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -4.39 Total: 16.64 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -28.21 -7.80 -36.01 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000698352069.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.695 kcal
(2) G-P(sol) polarization free energy of solvation -28.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds