Wall clock time and date at job start Mon Mar 30 2020 02:42:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46622 * 2 1
4 4 H 1.09001 * 109.47117 * 304.03779 * 3 2 1
5 5 C 1.50701 * 109.46888 * 184.04609 * 3 2 1
6 6 H 1.08005 * 119.99739 * 244.64569 * 5 3 2
7 7 C 1.37878 * 120.00220 * 64.64523 * 5 3 2
8 8 N 1.31515 * 120.00049 * 195.59306 * 7 5 3
9 9 Si 1.86795 * 119.99971 * 15.59307 * 7 5 3
10 10 H 1.48508 * 109.47088 * 90.16781 * 9 7 5
11 11 H 1.48497 * 109.47043 * 210.16434 * 9 7 5
12 12 H 1.48496 * 109.47213 * 330.16875 * 9 7 5
13 13 N 1.46899 * 109.47575 * 64.04311 * 3 2 1
14 14 C 1.46898 * 111.00148 * 192.38001 * 13 3 2
15 15 C 1.52999 * 109.47076 * 75.53267 * 14 13 3
16 16 C 1.46898 * 111.00016 * 68.42321 * 13 3 2
17 17 C 1.52995 * 109.47553 * 195.70781 * 16 13 3
18 18 H 1.09003 * 115.54882 * 29.27735 * 17 16 13
19 19 C 1.52998 * 117.50184 * 243.61538 * 17 16 13
20 20 C 1.52998 * 117.50055 * 174.98806 * 17 16 13
21 21 H 1.08992 * 117.49751 * 359.97438 * 20 17 16
22 22 C 1.53001 * 117.49805 * 214.97765 * 20 17 16
23 23 H 1.08999 * 109.46697 * 174.96416 * 1 2 3
24 24 H 1.09000 * 109.47091 * 294.96015 * 1 2 3
25 25 H 1.08995 * 109.47421 * 54.96303 * 1 2 3
26 26 H 1.08996 * 109.47179 * 119.99456 * 2 1 3
27 27 H 1.08998 * 109.46954 * 240.00130 * 2 1 3
28 28 H 0.96999 * 120.00128 * 180.02562 * 8 7 5
29 29 H 1.09002 * 109.47186 * 195.53590 * 14 13 3
30 30 H 1.08999 * 109.46813 * 315.53491 * 14 13 3
31 31 H 1.09005 * 109.47152 * 64.61430 * 15 14 13
32 32 H 1.09001 * 109.47013 * 184.61002 * 15 14 13
33 33 H 1.08994 * 109.47706 * 304.61815 * 15 14 13
34 34 H 1.09003 * 109.47281 * 315.71602 * 16 13 3
35 35 H 1.09009 * 109.46745 * 75.70655 * 16 13 3
36 36 H 1.09005 * 117.49722 * 359.97438 * 19 17 16
37 37 H 1.08995 * 117.50335 * 144.99597 * 19 17 16
38 38 H 1.09003 * 109.46985 * 60.00230 * 22 20 17
39 39 H 1.09002 * 109.47245 * 180.02562 * 22 20 17
40 40 H 1.09000 * 109.47429 * 300.00292 * 22 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6186 1.9768 -0.8516
5 6 3.5436 1.4438 -0.1003
6 1 4.1389 1.8248 0.7164
7 6 4.1593 0.9586 -1.2345
8 7 5.4426 0.6715 -1.2143
9 14 3.1709 0.7090 -2.7997
10 1 3.2113 1.9503 -3.6139
11 1 3.7527 -0.4132 -3.5789
12 1 1.7628 0.3917 -2.4506
13 7 1.6316 2.1063 1.2452
14 6 1.8412 3.5579 1.1613
15 6 0.7491 4.1812 0.2896
16 6 2.3385 1.5383 2.4009
17 6 1.6283 1.9572 3.6896
18 1 0.5553 2.1276 3.6010
19 6 2.4049 2.8385 4.6699
20 6 2.1443 1.3683 5.0041
21 1 2.9895 0.6822 4.9507
22 6 1.1147 1.0634 6.0940
23 1 -0.3633 -1.0237 -0.0902
24 1 -0.3633 0.4337 0.9317
25 1 -0.3634 0.5899 -0.8414
26 1 1.8934 -0.5137 0.8900
27 1 1.8933 -0.5138 -0.8900
28 1 5.8759 0.3304 -2.0124
29 1 1.7985 3.9896 2.1612
30 1 2.8173 3.7590 0.7199
31 1 -0.2195 4.0512 0.7724
32 1 0.9506 5.2446 0.1600
33 1 0.7381 3.6921 -0.6843
34 1 2.3432 0.4509 2.3254
35 1 3.3647 1.9058 2.4156
36 1 3.4221 3.1196 4.3969
37 1 1.8429 3.5887 5.2262
38 1 0.3915 0.3395 5.7183
39 1 1.6210 0.6521 6.9673
40 1 0.5981 1.9818 6.3729
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000698352069.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:32
Heat of formation + Delta-G solvation = -1.695739 kcal
Electronic energy + Delta-G solvation = -16638.725313 eV
Core-core repulsion = 14260.227147 eV
Total energy + Delta-G solvation = -2378.498166 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.90697 -38.00965 -34.80807 -33.72761 -31.47350 -29.80247 -28.63796 -26.17740
-24.66231 -22.78749 -22.06752 -21.12145 -20.67625 -18.67486 -17.06098 -16.55513
-16.17332 -15.46736 -15.06856 -14.95704 -14.71097 -14.22572 -14.08215 -13.85132
-13.48249 -13.42646 -12.96248 -12.83746 -12.53881 -12.52993 -12.40803 -12.13968
-12.08183 -11.92082 -11.76195 -11.45949 -11.38622 -11.04041 -10.68682 -10.60373
-10.42926 -8.86910 -8.32661 -6.30949 1.32017 1.36157 1.46259 2.34120
2.89693 3.02985 3.29600 3.92892 4.05796 4.13386 4.30717 4.44100
4.48701 4.55069 4.60744 4.62887 4.75038 4.79277 4.89404 4.94705
4.95565 5.01970 5.06880 5.10857 5.13879 5.21060 5.26093 5.28105
5.33037 5.42049 5.50458 5.53377 5.55695 5.59547 5.72410 6.20908
6.44879 6.60119 6.77113 7.35701 8.83978
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.027140 B = 0.008474 C = 0.008204
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1031.448165 B = 3303.320450 C = 3412.161079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.115 4.115
3 C 0.188 3.812
4 H 0.033 0.967
5 C -0.543 4.543
6 H 0.031 0.969
7 C 0.021 3.979
8 N -0.943 5.943
9 Si 0.922 3.078
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.222 1.222
13 N -0.513 5.513
14 C 0.052 3.948
15 C -0.133 4.133
16 C 0.102 3.898
17 C -0.138 4.138
18 H 0.114 0.886
19 C -0.176 4.176
20 C -0.153 4.153
21 H 0.088 0.912
22 C -0.113 4.113
23 H 0.052 0.948
24 H 0.064 0.936
25 H 0.044 0.956
26 H 0.045 0.955
27 H 0.039 0.961
28 H 0.263 0.737
29 H 0.074 0.926
30 H 0.007 0.993
31 H 0.069 0.931
32 H 0.065 0.935
33 H 0.038 0.962
34 H 0.057 0.943
35 H 0.003 0.997
36 H 0.074 0.926
37 H 0.110 0.890
38 H 0.061 0.939
39 H 0.067 0.933
40 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.876 2.650 8.643 14.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.154 4.154
3 C 0.080 3.920
4 H 0.051 0.949
5 C -0.582 4.582
6 H 0.049 0.951
7 C -0.177 4.177
8 N -0.583 5.583
9 Si 0.746 3.254
10 H -0.204 1.204
11 H -0.216 1.216
12 H -0.145 1.145
13 N -0.235 5.235
14 C -0.077 4.077
15 C -0.191 4.191
16 C -0.026 4.026
17 C -0.157 4.157
18 H 0.132 0.868
19 C -0.213 4.213
20 C -0.172 4.172
21 H 0.106 0.894
22 C -0.170 4.170
23 H 0.071 0.929
24 H 0.084 0.916
25 H 0.063 0.937
26 H 0.063 0.937
27 H 0.058 0.942
28 H 0.072 0.928
29 H 0.093 0.907
30 H 0.025 0.975
31 H 0.088 0.912
32 H 0.084 0.916
33 H 0.058 0.942
34 H 0.075 0.925
35 H 0.021 0.979
36 H 0.093 0.907
37 H 0.129 0.871
38 H 0.080 0.920
39 H 0.086 0.914
40 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -12.253 2.506 8.611 15.185
hybrid contribution 1.749 -0.062 -1.187 2.114
sum -10.505 2.444 7.425 13.094
Atomic orbital electron populations
1.21600 0.94615 1.00561 1.01933 1.21838 0.96310 0.97454 0.99765
1.19552 0.90991 0.92026 0.89479 0.94899 1.21883 0.92976 1.41099
1.02256 0.95052 1.25776 0.95564 0.94118 1.02280 1.70143 1.12987
1.45268 1.29885 0.86258 0.82010 0.77717 0.79462 1.20424 1.21560
1.14458 1.62407 1.55217 1.03185 1.02737 1.21991 0.96974 0.88795
0.99920 1.21669 0.98755 0.99603 0.99039 1.21367 0.93357 0.98528
0.89374 1.22338 0.99587 1.04547 0.89193 0.86758 1.23212 1.00722
0.93779 1.03602 1.22450 1.01653 0.96097 0.97016 0.89388 1.21314
0.97199 1.02015 0.96430 0.92901 0.91649 0.93709 0.93668 0.94248
0.92811 0.90726 0.97456 0.91241 0.91589 0.94243 0.92475 0.97912
0.90749 0.87143 0.91989 0.91373 0.91704
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.39 9.73 71.98 0.70 -3.69 16
2 C -0.12 -4.90 4.68 30.60 0.14 -4.75 16
3 C 0.19 8.63 1.16 44.17 0.05 8.68 16
4 H 0.03 1.55 5.20 -2.39 -0.01 1.53 16
5 C -0.54 -30.60 7.46 25.60 0.19 -30.41 16
6 H 0.03 1.99 6.36 -2.91 -0.02 1.97 16
7 C 0.02 1.21 5.33 84.65 0.45 1.67 16
8 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16
9 Si 0.92 43.73 25.81 68.60 1.77 45.50 16
10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
12 H -0.22 -9.51 5.47 99.48 0.54 -8.96 16
13 N -0.51 -20.43 3.83 -875.38 -3.35 -23.78 16
14 C 0.05 1.92 5.44 86.30 0.47 2.39 16
15 C -0.13 -4.15 10.08 71.98 0.73 -3.42 16
16 C 0.10 4.04 4.29 86.30 0.37 4.41 16
17 C -0.14 -4.18 4.68 -10.80 -0.05 -4.23 16
18 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16
19 C -0.18 -4.73 9.65 30.60 0.30 -4.43 16
20 C -0.15 -4.04 6.13 -10.79 -0.07 -4.10 16
21 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16
22 C -0.11 -2.23 10.19 71.98 0.73 -1.50 16
23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
24 H 0.06 2.12 7.87 -2.39 -0.02 2.10 16
25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
26 H 0.04 1.96 6.25 -2.39 -0.01 1.95 16
27 H 0.04 1.75 4.92 -2.39 -0.01 1.74 16
28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16
29 H 0.07 2.50 6.97 -2.39 -0.02 2.48 16
30 H 0.01 0.32 7.17 -2.39 -0.02 0.30 16
31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16
32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
33 H 0.04 1.34 6.64 -2.39 -0.02 1.32 16
34 H 0.06 2.43 6.03 -2.39 -0.01 2.41 16
35 H 0.00 0.12 6.32 -2.38 -0.02 0.11 16
36 H 0.07 2.22 8.03 -2.38 -0.02 2.20 16
37 H 0.11 2.44 8.05 -2.39 -0.02 2.42 16
38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
40 H 0.06 1.14 7.90 -2.39 -0.02 1.12 16
Total: -1.00 -63.24 303.25 3.55 -59.69
By element:
Atomic # 1 Polarization: 16.10 SS G_CDS: 0.82 Total: 16.92 kcal
Atomic # 6 Polarization: -43.41 SS G_CDS: 4.01 Total: -39.39 kcal
Atomic # 7 Polarization: -79.67 SS G_CDS: -3.05 Total: -82.72 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 1.77 Total: 45.50 kcal
Total: -63.24 3.55 -59.69 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000698352069.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.994 kcal
(2) G-P(sol) polarization free energy of solvation -63.241 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.696 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds