Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46622 * 2 1 4 4 H 1.09001 * 109.47117 * 304.03779 * 3 2 1 5 5 C 1.50701 * 109.46888 * 184.04609 * 3 2 1 6 6 H 1.08005 * 119.99739 * 244.64569 * 5 3 2 7 7 C 1.37878 * 120.00220 * 64.64523 * 5 3 2 8 8 N 1.31515 * 120.00049 * 195.59306 * 7 5 3 9 9 Si 1.86795 * 119.99971 * 15.59307 * 7 5 3 10 10 H 1.48508 * 109.47088 * 90.16781 * 9 7 5 11 11 H 1.48497 * 109.47043 * 210.16434 * 9 7 5 12 12 H 1.48496 * 109.47213 * 330.16875 * 9 7 5 13 13 N 1.46899 * 109.47575 * 64.04311 * 3 2 1 14 14 C 1.46898 * 111.00148 * 192.38001 * 13 3 2 15 15 C 1.52999 * 109.47076 * 75.53267 * 14 13 3 16 16 C 1.46898 * 111.00016 * 68.42321 * 13 3 2 17 17 C 1.52995 * 109.47553 * 195.70781 * 16 13 3 18 18 H 1.09003 * 115.54882 * 29.27735 * 17 16 13 19 19 C 1.52998 * 117.50184 * 243.61538 * 17 16 13 20 20 C 1.52998 * 117.50055 * 174.98806 * 17 16 13 21 21 H 1.08992 * 117.49751 * 359.97438 * 20 17 16 22 22 C 1.53001 * 117.49805 * 214.97765 * 20 17 16 23 23 H 1.08999 * 109.46697 * 174.96416 * 1 2 3 24 24 H 1.09000 * 109.47091 * 294.96015 * 1 2 3 25 25 H 1.08995 * 109.47421 * 54.96303 * 1 2 3 26 26 H 1.08996 * 109.47179 * 119.99456 * 2 1 3 27 27 H 1.08998 * 109.46954 * 240.00130 * 2 1 3 28 28 H 0.96999 * 120.00128 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47186 * 195.53590 * 14 13 3 30 30 H 1.08999 * 109.46813 * 315.53491 * 14 13 3 31 31 H 1.09005 * 109.47152 * 64.61430 * 15 14 13 32 32 H 1.09001 * 109.47013 * 184.61002 * 15 14 13 33 33 H 1.08994 * 109.47706 * 304.61815 * 15 14 13 34 34 H 1.09003 * 109.47281 * 315.71602 * 16 13 3 35 35 H 1.09009 * 109.46745 * 75.70655 * 16 13 3 36 36 H 1.09005 * 117.49722 * 359.97438 * 19 17 16 37 37 H 1.08995 * 117.50335 * 144.99597 * 19 17 16 38 38 H 1.09003 * 109.46985 * 60.00230 * 22 20 17 39 39 H 1.09002 * 109.47245 * 180.02562 * 22 20 17 40 40 H 1.09000 * 109.47429 * 300.00292 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6186 1.9768 -0.8516 5 6 3.5436 1.4438 -0.1003 6 1 4.1389 1.8248 0.7164 7 6 4.1593 0.9586 -1.2345 8 7 5.4426 0.6715 -1.2143 9 14 3.1709 0.7090 -2.7997 10 1 3.2113 1.9503 -3.6139 11 1 3.7527 -0.4132 -3.5789 12 1 1.7628 0.3917 -2.4506 13 7 1.6316 2.1063 1.2452 14 6 1.8412 3.5579 1.1613 15 6 0.7491 4.1812 0.2896 16 6 2.3385 1.5383 2.4009 17 6 1.6283 1.9572 3.6896 18 1 0.5553 2.1276 3.6010 19 6 2.4049 2.8385 4.6699 20 6 2.1443 1.3683 5.0041 21 1 2.9895 0.6822 4.9507 22 6 1.1147 1.0634 6.0940 23 1 -0.3633 -1.0237 -0.0902 24 1 -0.3633 0.4337 0.9317 25 1 -0.3634 0.5899 -0.8414 26 1 1.8934 -0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 5.8759 0.3304 -2.0124 29 1 1.7985 3.9896 2.1612 30 1 2.8173 3.7590 0.7199 31 1 -0.2195 4.0512 0.7724 32 1 0.9506 5.2446 0.1600 33 1 0.7381 3.6921 -0.6843 34 1 2.3432 0.4509 2.3254 35 1 3.3647 1.9058 2.4156 36 1 3.4221 3.1196 4.3969 37 1 1.8429 3.5887 5.2262 38 1 0.3915 0.3395 5.7183 39 1 1.6210 0.6521 6.9673 40 1 0.5981 1.9818 6.3729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698352069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -1.695739 kcal Electronic energy + Delta-G solvation = -16638.725313 eV Core-core repulsion = 14260.227147 eV Total energy + Delta-G solvation = -2378.498166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90697 -38.00965 -34.80807 -33.72761 -31.47350 -29.80247 -28.63796 -26.17740 -24.66231 -22.78749 -22.06752 -21.12145 -20.67625 -18.67486 -17.06098 -16.55513 -16.17332 -15.46736 -15.06856 -14.95704 -14.71097 -14.22572 -14.08215 -13.85132 -13.48249 -13.42646 -12.96248 -12.83746 -12.53881 -12.52993 -12.40803 -12.13968 -12.08183 -11.92082 -11.76195 -11.45949 -11.38622 -11.04041 -10.68682 -10.60373 -10.42926 -8.86910 -8.32661 -6.30949 1.32017 1.36157 1.46259 2.34120 2.89693 3.02985 3.29600 3.92892 4.05796 4.13386 4.30717 4.44100 4.48701 4.55069 4.60744 4.62887 4.75038 4.79277 4.89404 4.94705 4.95565 5.01970 5.06880 5.10857 5.13879 5.21060 5.26093 5.28105 5.33037 5.42049 5.50458 5.53377 5.55695 5.59547 5.72410 6.20908 6.44879 6.60119 6.77113 7.35701 8.83978 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.008474 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.448165 B = 3303.320450 C = 3412.161079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 C 0.188 3.812 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.031 0.969 7 C 0.021 3.979 8 N -0.943 5.943 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.222 1.222 13 N -0.513 5.513 14 C 0.052 3.948 15 C -0.133 4.133 16 C 0.102 3.898 17 C -0.138 4.138 18 H 0.114 0.886 19 C -0.176 4.176 20 C -0.153 4.153 21 H 0.088 0.912 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.074 0.926 30 H 0.007 0.993 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.003 0.997 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.876 2.650 8.643 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C 0.080 3.920 4 H 0.051 0.949 5 C -0.582 4.582 6 H 0.049 0.951 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.145 1.145 13 N -0.235 5.235 14 C -0.077 4.077 15 C -0.191 4.191 16 C -0.026 4.026 17 C -0.157 4.157 18 H 0.132 0.868 19 C -0.213 4.213 20 C -0.172 4.172 21 H 0.106 0.894 22 C -0.170 4.170 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.253 2.506 8.611 15.185 hybrid contribution 1.749 -0.062 -1.187 2.114 sum -10.505 2.444 7.425 13.094 Atomic orbital electron populations 1.21600 0.94615 1.00561 1.01933 1.21838 0.96310 0.97454 0.99765 1.19552 0.90991 0.92026 0.89479 0.94899 1.21883 0.92976 1.41099 1.02256 0.95052 1.25776 0.95564 0.94118 1.02280 1.70143 1.12987 1.45268 1.29885 0.86258 0.82010 0.77717 0.79462 1.20424 1.21560 1.14458 1.62407 1.55217 1.03185 1.02737 1.21991 0.96974 0.88795 0.99920 1.21669 0.98755 0.99603 0.99039 1.21367 0.93357 0.98528 0.89374 1.22338 0.99587 1.04547 0.89193 0.86758 1.23212 1.00722 0.93779 1.03602 1.22450 1.01653 0.96097 0.97016 0.89388 1.21314 0.97199 1.02015 0.96430 0.92901 0.91649 0.93709 0.93668 0.94248 0.92811 0.90726 0.97456 0.91241 0.91589 0.94243 0.92475 0.97912 0.90749 0.87143 0.91989 0.91373 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.73 71.98 0.70 -3.69 16 2 C -0.12 -4.90 4.68 30.60 0.14 -4.75 16 3 C 0.19 8.63 1.16 44.17 0.05 8.68 16 4 H 0.03 1.55 5.20 -2.39 -0.01 1.53 16 5 C -0.54 -30.60 7.46 25.60 0.19 -30.41 16 6 H 0.03 1.99 6.36 -2.91 -0.02 1.97 16 7 C 0.02 1.21 5.33 84.65 0.45 1.67 16 8 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16 9 Si 0.92 43.73 25.81 68.60 1.77 45.50 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.22 -9.51 5.47 99.48 0.54 -8.96 16 13 N -0.51 -20.43 3.83 -875.38 -3.35 -23.78 16 14 C 0.05 1.92 5.44 86.30 0.47 2.39 16 15 C -0.13 -4.15 10.08 71.98 0.73 -3.42 16 16 C 0.10 4.04 4.29 86.30 0.37 4.41 16 17 C -0.14 -4.18 4.68 -10.80 -0.05 -4.23 16 18 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 19 C -0.18 -4.73 9.65 30.60 0.30 -4.43 16 20 C -0.15 -4.04 6.13 -10.79 -0.07 -4.10 16 21 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 22 C -0.11 -2.23 10.19 71.98 0.73 -1.50 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.12 7.87 -2.39 -0.02 2.10 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.96 6.25 -2.39 -0.01 1.95 16 27 H 0.04 1.75 4.92 -2.39 -0.01 1.74 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.07 2.50 6.97 -2.39 -0.02 2.48 16 30 H 0.01 0.32 7.17 -2.39 -0.02 0.30 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.34 6.64 -2.39 -0.02 1.32 16 34 H 0.06 2.43 6.03 -2.39 -0.01 2.41 16 35 H 0.00 0.12 6.32 -2.38 -0.02 0.11 16 36 H 0.07 2.22 8.03 -2.38 -0.02 2.20 16 37 H 0.11 2.44 8.05 -2.39 -0.02 2.42 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.14 7.90 -2.39 -0.02 1.12 16 Total: -1.00 -63.24 303.25 3.55 -59.69 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.82 Total: 16.92 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 4.01 Total: -39.39 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -3.05 Total: -82.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.77 Total: 45.50 kcal Total: -63.24 3.55 -59.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698352069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.994 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds