Wall clock time and date at job start Mon Mar 30 2020 03:03:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53005 * 109.47262 * 2 1
4 4 N 1.46504 * 109.47101 * 119.99770 * 2 1 3
5 5 C 1.36932 * 120.00158 * 118.26224 * 4 2 1
6 6 H 1.07993 * 120.00598 * 150.54350 * 5 4 2
7 7 C 1.38814 * 119.99781 * 330.54061 * 5 4 2
8 8 N 1.31617 * 120.00264 * 341.56976 * 7 5 4
9 9 Si 1.86802 * 119.99812 * 161.56960 * 7 5 4
10 10 H 1.48501 * 109.47156 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47191 * 120.00119 * 9 7 5
12 12 H 1.48505 * 109.46865 * 239.99888 * 9 7 5
13 13 C 1.46505 * 119.99975 * 298.26527 * 4 2 1
14 14 C 1.52995 * 109.47215 * 89.99575 * 13 4 2
15 15 C 1.53004 * 109.47187 * 180.02562 * 14 13 4
16 16 C 1.52999 * 109.46966 * 180.02562 * 15 14 13
17 17 C 1.53784 * 113.61192 * 274.13118 * 16 15 14
18 18 C 1.53954 * 87.01974 * 220.05037 * 17 16 15
19 19 C 1.53780 * 113.61150 * 176.52978 * 16 15 14
20 20 H 1.08999 * 109.47572 * 300.00422 * 1 2 3
21 21 H 1.09002 * 109.46855 * 60.00310 * 1 2 3
22 22 H 1.08996 * 109.47444 * 180.02562 * 1 2 3
23 23 H 1.08994 * 109.47650 * 240.00034 * 2 1 3
24 24 H 1.08998 * 109.47370 * 179.97438 * 3 2 1
25 25 H 1.08995 * 109.46934 * 300.00057 * 3 2 1
26 26 H 1.09007 * 109.46895 * 59.99430 * 3 2 1
27 27 H 0.97002 * 120.00052 * 179.97438 * 8 7 5
28 28 H 1.09004 * 109.46851 * 329.99899 * 13 4 2
29 29 H 1.08995 * 109.47364 * 209.99780 * 13 4 2
30 30 H 1.09004 * 109.47324 * 300.00370 * 14 13 4
31 31 H 1.09003 * 109.47339 * 60.00017 * 14 13 4
32 32 H 1.08997 * 109.46961 * 299.99663 * 15 14 13
33 33 H 1.08994 * 109.46932 * 60.00297 * 15 14 13
34 34 H 1.08998 * 112.85039 * 45.33084 * 16 15 14
35 35 H 1.08995 * 113.61751 * 334.57588 * 17 16 15
36 36 H 1.09006 * 113.61083 * 105.47721 * 17 16 15
37 37 H 1.09000 * 113.53798 * 270.80945 * 18 17 16
38 38 H 1.09003 * 113.66451 * 139.93740 * 18 17 16
39 39 H 1.09001 * 113.61315 * 254.52477 * 19 16 15
40 40 H 1.09001 * 113.61555 * 25.34652 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.7759 -1.8243 1.0710
6 1 3.5099 -2.0693 1.8243
7 6 2.6004 -2.6588 -0.0243
8 7 1.4985 -2.5825 -0.7401
9 14 3.9283 -3.8903 -0.4825
10 1 5.0593 -3.7771 0.4731
11 1 3.3688 -5.2648 -0.4276
12 1 4.4125 -3.6074 -1.8576
13 6 1.6960 -0.1682 2.5265
14 6 0.3860 -0.7896 3.0148
15 6 0.0490 -0.2435 4.4038
16 6 -1.2607 -0.8654 4.8923
17 6 -2.5150 -0.1152 4.4139
18 6 -3.0980 -0.3586 5.8178
19 6 -1.6472 -0.4452 6.3202
20 1 -0.3634 0.5139 0.8899
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0276 0.0005
23 1 1.8934 -0.5138 -0.8899
24 1 3.1300 1.4426 0.0005
25 1 1.6767 1.9563 -0.8899
26 1 1.6766 1.9564 0.8900
27 1 1.3761 -3.1654 -1.5057
28 1 1.5872 0.9152 2.4748
29 1 2.4983 -0.4201 3.2200
30 1 -0.4164 -0.5377 2.3213
31 1 0.4947 -1.8729 3.0664
32 1 0.8512 -0.4952 5.0975
33 1 -0.0599 0.8397 4.3517
34 1 -1.3059 -1.9418 4.7265
35 1 -2.3363 0.9368 4.1916
36 1 -3.0558 -0.6306 3.6201
37 1 -3.6469 -1.2962 5.9046
38 1 -3.6481 0.4936 6.2168
39 1 -1.4884 -1.2267 7.0633
40 1 -1.2296 0.5157 6.6207
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701519036.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:54
Heat of formation + Delta-G solvation = 15.603245 kcal
Electronic energy + Delta-G solvation = -16314.147726 eV
Core-core repulsion = 13936.399700 eV
Total energy + Delta-G solvation = -2377.748026 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-38.76272 -36.67228 -32.89397 -31.72366 -29.73024 -26.66980 -25.96605 -25.44920
-23.76091 -22.18018 -20.33401 -19.27163 -18.82640 -16.74818 -15.41653 -14.78402
-14.57962 -14.27412 -13.57724 -13.44217 -12.77246 -12.50773 -12.31225 -12.08615
-12.02199 -11.48097 -11.40764 -11.15471 -11.04553 -10.88959 -10.65558 -10.56803
-10.34931 -10.11719 -10.08106 -9.90531 -9.74896 -9.51172 -9.32962 -9.20137
-8.34489 -6.54238 -5.71357 -3.13929 3.40686 3.49159 3.51342 4.56062
4.78789 4.82324 4.91191 5.03172 5.44380 5.50944 5.68924 5.72893
5.86278 5.89155 5.92829 5.99123 6.10976 6.18312 6.22741 6.32335
6.45677 6.48960 6.53087 6.61051 6.67824 6.72666 6.79782 6.80545
6.88162 6.97013 7.14103 7.19698 7.43125 7.75168 7.82455 7.94280
8.58271 9.33121 9.97117 10.51194 11.35459
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.029466 B = 0.006832 C = 0.006246
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.029922 B = 4097.194007 C = 4481.559093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.180 3.820
3 C -0.164 4.164
4 N -0.585 5.585
5 C -0.249 4.249
6 H 0.063 0.937
7 C 0.003 3.997
8 N -0.895 5.895
9 Si 0.896 3.104
10 H -0.279 1.279
11 H -0.292 1.292
12 H -0.290 1.290
13 C 0.148 3.852
14 C -0.139 4.139
15 C -0.107 4.107
16 C -0.107 4.107
17 C -0.136 4.136
18 C -0.144 4.144
19 C -0.140 4.140
20 H 0.028 0.972
21 H 0.023 0.977
22 H 0.070 0.930
23 H 0.096 0.904
24 H 0.044 0.956
25 H 0.037 0.963
26 H 0.037 0.963
27 H 0.251 0.749
28 H 0.034 0.966
29 H 0.036 0.964
30 H 0.061 0.939
31 H 0.058 0.942
32 H 0.054 0.946
33 H 0.052 0.948
34 H 0.086 0.914
35 H 0.078 0.922
36 H 0.064 0.936
37 H 0.075 0.925
38 H 0.061 0.939
39 H 0.061 0.939
40 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.699 5.615 8.561 11.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.073 3.927
3 C -0.223 4.223
4 N -0.306 5.306
5 C -0.379 4.379
6 H 0.080 0.920
7 C -0.196 4.196
8 N -0.540 5.540
9 Si 0.726 3.274
10 H -0.204 1.204
11 H -0.219 1.219
12 H -0.217 1.217
13 C 0.022 3.978
14 C -0.179 4.179
15 C -0.146 4.146
16 C -0.125 4.125
17 C -0.173 4.173
18 C -0.182 4.182
19 C -0.177 4.177
20 H 0.047 0.953
21 H 0.042 0.958
22 H 0.089 0.911
23 H 0.113 0.887
24 H 0.063 0.937
25 H 0.056 0.944
26 H 0.056 0.944
27 H 0.061 0.939
28 H 0.052 0.948
29 H 0.055 0.945
30 H 0.080 0.920
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.071 0.929
34 H 0.104 0.896
35 H 0.096 0.904
36 H 0.082 0.918
37 H 0.094 0.906
38 H 0.080 0.920
39 H 0.079 0.921
40 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -5.714 5.520 8.413 11.571
hybrid contribution 0.507 -0.764 -0.303 0.965
sum -5.207 4.757 8.110 10.748
Atomic orbital electron populations
1.22217 0.98943 1.01887 0.97295 1.20248 0.91557 0.88579 0.92278
1.22372 1.00562 1.00196 0.99176 1.44007 1.59971 1.27582 0.99032
1.19196 1.11789 0.99094 1.07816 0.91956 1.25010 0.96445 0.97438
1.00661 1.70042 1.23518 1.40224 1.20190 0.86326 0.81925 0.81008
0.78135 1.20375 1.21906 1.21700 1.20827 0.93775 0.95339 0.87900
1.22366 1.00362 1.01156 0.94026 1.21575 0.95599 0.99195 0.98188
1.22551 0.95007 1.00003 0.94942 1.22974 0.97355 1.00660 0.96353
1.22844 0.96461 1.01332 0.97525 1.22957 0.96312 1.01341 0.97139
0.95316 0.95756 0.91071 0.88652 0.93698 0.94358 0.94373 0.93926
0.94788 0.94518 0.91995 0.92354 0.92728 0.92891 0.89561 0.90367
0.91755 0.90612 0.92047 0.92068 0.90447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.21 8.09 37.16 0.30 -2.91 16
2 C 0.18 4.27 2.39 -67.93 -0.16 4.11 16
3 C -0.16 -3.31 9.14 37.16 0.34 -2.97 16
4 N -0.59 -14.54 2.41 -165.66 -0.40 -14.94 16
5 C -0.25 -6.82 9.57 -15.06 -0.14 -6.97 16
6 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16
7 C 0.00 0.08 4.85 -17.43 -0.08 0.00 16
8 N -0.90 -25.48 10.40 55.49 0.58 -24.90 16
9 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16
10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
13 C 0.15 3.14 5.13 -4.04 -0.02 3.12 16
14 C -0.14 -2.71 5.26 -26.73 -0.14 -2.85 16
15 C -0.11 -1.66 5.04 -26.73 -0.13 -1.80 16
16 C -0.11 -1.48 3.64 -89.81 -0.33 -1.81 16
17 C -0.14 -1.76 7.65 -25.83 -0.20 -1.95 16
18 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16
19 C -0.14 -1.64 7.65 -25.92 -0.20 -1.84 16
20 H 0.03 0.59 6.11 -51.93 -0.32 0.27 16
21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
22 H 0.07 1.79 7.40 -51.93 -0.38 1.40 16
23 H 0.10 2.59 5.85 -51.93 -0.30 2.28 16
24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.04 0.72 6.61 -51.92 -0.34 0.37 16
27 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16
28 H 0.03 0.67 6.34 -51.93 -0.33 0.35 16
29 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16
30 H 0.06 1.27 5.43 -51.93 -0.28 0.98 16
31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
33 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16
34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16
35 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16
36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16
LS Contribution 307.49 15.07 4.63 4.63
Total: -1.00 -27.77 307.49 -8.59 -36.36
By element:
Atomic # 1 Polarization: 7.15 SS G_CDS: -7.39 Total: -0.24 kcal
Atomic # 6 Polarization: -16.69 SS G_CDS: -0.98 Total: -17.67 kcal
Atomic # 7 Polarization: -40.02 SS G_CDS: 0.18 Total: -39.84 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -27.77 -8.59 -36.36 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701519036.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.963 kcal
(2) G-P(sol) polarization free energy of solvation -27.769 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.603 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds