Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47262 * 2 1 4 4 N 1.46504 * 109.47101 * 119.99770 * 2 1 3 5 5 C 1.36932 * 120.00158 * 118.26224 * 4 2 1 6 6 H 1.07993 * 120.00598 * 150.54350 * 5 4 2 7 7 C 1.38814 * 119.99781 * 330.54061 * 5 4 2 8 8 N 1.31617 * 120.00264 * 341.56976 * 7 5 4 9 9 Si 1.86802 * 119.99812 * 161.56960 * 7 5 4 10 10 H 1.48501 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47191 * 120.00119 * 9 7 5 12 12 H 1.48505 * 109.46865 * 239.99888 * 9 7 5 13 13 C 1.46505 * 119.99975 * 298.26527 * 4 2 1 14 14 C 1.52995 * 109.47215 * 89.99575 * 13 4 2 15 15 C 1.53004 * 109.47187 * 180.02562 * 14 13 4 16 16 C 1.52999 * 109.46966 * 180.02562 * 15 14 13 17 17 C 1.53784 * 113.61192 * 274.13118 * 16 15 14 18 18 C 1.53954 * 87.01974 * 220.05037 * 17 16 15 19 19 C 1.53780 * 113.61150 * 176.52978 * 16 15 14 20 20 H 1.08999 * 109.47572 * 300.00422 * 1 2 3 21 21 H 1.09002 * 109.46855 * 60.00310 * 1 2 3 22 22 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47650 * 240.00034 * 2 1 3 24 24 H 1.08998 * 109.47370 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.46934 * 300.00057 * 3 2 1 26 26 H 1.09007 * 109.46895 * 59.99430 * 3 2 1 27 27 H 0.97002 * 120.00052 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46851 * 329.99899 * 13 4 2 29 29 H 1.08995 * 109.47364 * 209.99780 * 13 4 2 30 30 H 1.09004 * 109.47324 * 300.00370 * 14 13 4 31 31 H 1.09003 * 109.47339 * 60.00017 * 14 13 4 32 32 H 1.08997 * 109.46961 * 299.99663 * 15 14 13 33 33 H 1.08994 * 109.46932 * 60.00297 * 15 14 13 34 34 H 1.08998 * 112.85039 * 45.33084 * 16 15 14 35 35 H 1.08995 * 113.61751 * 334.57588 * 17 16 15 36 36 H 1.09006 * 113.61083 * 105.47721 * 17 16 15 37 37 H 1.09000 * 113.53798 * 270.80945 * 18 17 16 38 38 H 1.09003 * 113.66451 * 139.93740 * 18 17 16 39 39 H 1.09001 * 113.61315 * 254.52477 * 19 16 15 40 40 H 1.09001 * 113.61555 * 25.34652 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7759 -1.8243 1.0710 6 1 3.5099 -2.0693 1.8243 7 6 2.6004 -2.6588 -0.0243 8 7 1.4985 -2.5825 -0.7401 9 14 3.9283 -3.8903 -0.4825 10 1 5.0593 -3.7771 0.4731 11 1 3.3688 -5.2648 -0.4276 12 1 4.4125 -3.6074 -1.8576 13 6 1.6960 -0.1682 2.5265 14 6 0.3860 -0.7896 3.0148 15 6 0.0490 -0.2435 4.4038 16 6 -1.2607 -0.8654 4.8923 17 6 -2.5150 -0.1152 4.4139 18 6 -3.0980 -0.3586 5.8178 19 6 -1.6472 -0.4452 6.3202 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.3761 -3.1654 -1.5057 28 1 1.5872 0.9152 2.4748 29 1 2.4983 -0.4201 3.2200 30 1 -0.4164 -0.5377 2.3213 31 1 0.4947 -1.8729 3.0664 32 1 0.8512 -0.4952 5.0975 33 1 -0.0599 0.8397 4.3517 34 1 -1.3059 -1.9418 4.7265 35 1 -2.3363 0.9368 4.1916 36 1 -3.0558 -0.6306 3.6201 37 1 -3.6469 -1.2962 5.9046 38 1 -3.6481 0.4936 6.2168 39 1 -1.4884 -1.2267 7.0633 40 1 -1.2296 0.5157 6.6207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701519036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = 15.603245 kcal Electronic energy + Delta-G solvation = -16314.147726 eV Core-core repulsion = 13936.399700 eV Total energy + Delta-G solvation = -2377.748026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.76272 -36.67228 -32.89397 -31.72366 -29.73024 -26.66980 -25.96605 -25.44920 -23.76091 -22.18018 -20.33401 -19.27163 -18.82640 -16.74818 -15.41653 -14.78402 -14.57962 -14.27412 -13.57724 -13.44217 -12.77246 -12.50773 -12.31225 -12.08615 -12.02199 -11.48097 -11.40764 -11.15471 -11.04553 -10.88959 -10.65558 -10.56803 -10.34931 -10.11719 -10.08106 -9.90531 -9.74896 -9.51172 -9.32962 -9.20137 -8.34489 -6.54238 -5.71357 -3.13929 3.40686 3.49159 3.51342 4.56062 4.78789 4.82324 4.91191 5.03172 5.44380 5.50944 5.68924 5.72893 5.86278 5.89155 5.92829 5.99123 6.10976 6.18312 6.22741 6.32335 6.45677 6.48960 6.53087 6.61051 6.67824 6.72666 6.79782 6.80545 6.88162 6.97013 7.14103 7.19698 7.43125 7.75168 7.82455 7.94280 8.58271 9.33121 9.97117 10.51194 11.35459 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029466 B = 0.006832 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.029922 B = 4097.194007 C = 4481.559093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.180 3.820 3 C -0.164 4.164 4 N -0.585 5.585 5 C -0.249 4.249 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.290 1.290 13 C 0.148 3.852 14 C -0.139 4.139 15 C -0.107 4.107 16 C -0.107 4.107 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.140 4.140 20 H 0.028 0.972 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.251 0.749 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 5.615 8.561 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 C -0.223 4.223 4 N -0.306 5.306 5 C -0.379 4.379 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.219 1.219 12 H -0.217 1.217 13 C 0.022 3.978 14 C -0.179 4.179 15 C -0.146 4.146 16 C -0.125 4.125 17 C -0.173 4.173 18 C -0.182 4.182 19 C -0.177 4.177 20 H 0.047 0.953 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.113 0.887 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.714 5.520 8.413 11.571 hybrid contribution 0.507 -0.764 -0.303 0.965 sum -5.207 4.757 8.110 10.748 Atomic orbital electron populations 1.22217 0.98943 1.01887 0.97295 1.20248 0.91557 0.88579 0.92278 1.22372 1.00562 1.00196 0.99176 1.44007 1.59971 1.27582 0.99032 1.19196 1.11789 0.99094 1.07816 0.91956 1.25010 0.96445 0.97438 1.00661 1.70042 1.23518 1.40224 1.20190 0.86326 0.81925 0.81008 0.78135 1.20375 1.21906 1.21700 1.20827 0.93775 0.95339 0.87900 1.22366 1.00362 1.01156 0.94026 1.21575 0.95599 0.99195 0.98188 1.22551 0.95007 1.00003 0.94942 1.22974 0.97355 1.00660 0.96353 1.22844 0.96461 1.01332 0.97525 1.22957 0.96312 1.01341 0.97139 0.95316 0.95756 0.91071 0.88652 0.93698 0.94358 0.94373 0.93926 0.94788 0.94518 0.91995 0.92354 0.92728 0.92891 0.89561 0.90367 0.91755 0.90612 0.92047 0.92068 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.09 37.16 0.30 -2.91 16 2 C 0.18 4.27 2.39 -67.93 -0.16 4.11 16 3 C -0.16 -3.31 9.14 37.16 0.34 -2.97 16 4 N -0.59 -14.54 2.41 -165.66 -0.40 -14.94 16 5 C -0.25 -6.82 9.57 -15.06 -0.14 -6.97 16 6 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 7 C 0.00 0.08 4.85 -17.43 -0.08 0.00 16 8 N -0.90 -25.48 10.40 55.49 0.58 -24.90 16 9 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.15 3.14 5.13 -4.04 -0.02 3.12 16 14 C -0.14 -2.71 5.26 -26.73 -0.14 -2.85 16 15 C -0.11 -1.66 5.04 -26.73 -0.13 -1.80 16 16 C -0.11 -1.48 3.64 -89.81 -0.33 -1.81 16 17 C -0.14 -1.76 7.65 -25.83 -0.20 -1.95 16 18 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 19 C -0.14 -1.64 7.65 -25.92 -0.20 -1.84 16 20 H 0.03 0.59 6.11 -51.93 -0.32 0.27 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.07 1.79 7.40 -51.93 -0.38 1.40 16 23 H 0.10 2.59 5.85 -51.93 -0.30 2.28 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.72 6.61 -51.92 -0.34 0.37 16 27 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 28 H 0.03 0.67 6.34 -51.93 -0.33 0.35 16 29 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 30 H 0.06 1.27 5.43 -51.93 -0.28 0.98 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -27.77 307.49 -8.59 -36.36 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.39 Total: -0.24 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -0.98 Total: -17.67 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.18 Total: -39.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.77 -8.59 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701519036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.963 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds