Wall clock time and date at job start Mon Mar 30 2020 03:03:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53005 * 109.47262 * 2 1
4 4 N 1.46504 * 109.47101 * 119.99770 * 2 1 3
5 5 C 1.36932 * 120.00158 * 118.26224 * 4 2 1
6 6 H 1.07993 * 120.00598 * 150.54350 * 5 4 2
7 7 C 1.38814 * 119.99781 * 330.54061 * 5 4 2
8 8 N 1.31617 * 120.00264 * 341.56976 * 7 5 4
9 9 Si 1.86802 * 119.99812 * 161.56960 * 7 5 4
10 10 H 1.48501 * 109.47156 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47191 * 120.00119 * 9 7 5
12 12 H 1.48505 * 109.46865 * 239.99888 * 9 7 5
13 13 C 1.46505 * 119.99975 * 298.26527 * 4 2 1
14 14 C 1.52995 * 109.47215 * 89.99575 * 13 4 2
15 15 C 1.53004 * 109.47187 * 180.02562 * 14 13 4
16 16 C 1.52999 * 109.46966 * 180.02562 * 15 14 13
17 17 C 1.53784 * 113.61192 * 274.13118 * 16 15 14
18 18 C 1.53954 * 87.01974 * 220.05037 * 17 16 15
19 19 C 1.53780 * 113.61150 * 176.52978 * 16 15 14
20 20 H 1.08999 * 109.47572 * 300.00422 * 1 2 3
21 21 H 1.09002 * 109.46855 * 60.00310 * 1 2 3
22 22 H 1.08996 * 109.47444 * 180.02562 * 1 2 3
23 23 H 1.08994 * 109.47650 * 240.00034 * 2 1 3
24 24 H 1.08998 * 109.47370 * 179.97438 * 3 2 1
25 25 H 1.08995 * 109.46934 * 300.00057 * 3 2 1
26 26 H 1.09007 * 109.46895 * 59.99430 * 3 2 1
27 27 H 0.97002 * 120.00052 * 179.97438 * 8 7 5
28 28 H 1.09004 * 109.46851 * 329.99899 * 13 4 2
29 29 H 1.08995 * 109.47364 * 209.99780 * 13 4 2
30 30 H 1.09004 * 109.47324 * 300.00370 * 14 13 4
31 31 H 1.09003 * 109.47339 * 60.00017 * 14 13 4
32 32 H 1.08997 * 109.46961 * 299.99663 * 15 14 13
33 33 H 1.08994 * 109.46932 * 60.00297 * 15 14 13
34 34 H 1.08998 * 112.85039 * 45.33084 * 16 15 14
35 35 H 1.08995 * 113.61751 * 334.57588 * 17 16 15
36 36 H 1.09006 * 113.61083 * 105.47721 * 17 16 15
37 37 H 1.09000 * 113.53798 * 270.80945 * 18 17 16
38 38 H 1.09003 * 113.66451 * 139.93740 * 18 17 16
39 39 H 1.09001 * 113.61315 * 254.52477 * 19 16 15
40 40 H 1.09001 * 113.61555 * 25.34652 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.7759 -1.8243 1.0710
6 1 3.5099 -2.0693 1.8243
7 6 2.6004 -2.6588 -0.0243
8 7 1.4985 -2.5825 -0.7401
9 14 3.9283 -3.8903 -0.4825
10 1 5.0593 -3.7771 0.4731
11 1 3.3688 -5.2648 -0.4276
12 1 4.4125 -3.6074 -1.8576
13 6 1.6960 -0.1682 2.5265
14 6 0.3860 -0.7896 3.0148
15 6 0.0490 -0.2435 4.4038
16 6 -1.2607 -0.8654 4.8923
17 6 -2.5150 -0.1152 4.4139
18 6 -3.0980 -0.3586 5.8178
19 6 -1.6472 -0.4452 6.3202
20 1 -0.3634 0.5139 0.8899
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0276 0.0005
23 1 1.8934 -0.5138 -0.8899
24 1 3.1300 1.4426 0.0005
25 1 1.6767 1.9563 -0.8899
26 1 1.6766 1.9564 0.8900
27 1 1.3761 -3.1654 -1.5057
28 1 1.5872 0.9152 2.4748
29 1 2.4983 -0.4201 3.2200
30 1 -0.4164 -0.5377 2.3213
31 1 0.4947 -1.8729 3.0664
32 1 0.8512 -0.4952 5.0975
33 1 -0.0599 0.8397 4.3517
34 1 -1.3059 -1.9418 4.7265
35 1 -2.3363 0.9368 4.1916
36 1 -3.0558 -0.6306 3.6201
37 1 -3.6469 -1.2962 5.9046
38 1 -3.6481 0.4936 6.2168
39 1 -1.4884 -1.2267 7.0633
40 1 -1.2296 0.5157 6.6207
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701519036.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:53
Heat of formation + Delta-G solvation = 2.862062 kcal
Electronic energy + Delta-G solvation = -16314.700225 eV
Core-core repulsion = 13936.399700 eV
Total energy + Delta-G solvation = -2378.300525 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.83658 -38.47033 -34.49901 -33.67094 -31.50599 -28.23277 -27.69006 -26.42993
-25.54028 -23.65046 -21.82613 -20.87100 -20.13161 -18.68570 -16.71496 -16.47928
-16.22989 -15.66858 -15.23936 -14.98608 -14.40086 -14.26115 -13.59646 -13.46432
-13.25351 -13.17871 -13.02827 -12.86698 -12.70520 -12.66941 -12.18420 -12.07062
-11.90207 -11.83125 -11.54931 -11.33903 -11.18477 -11.14663 -10.83623 -10.78924
-10.38888 -8.53639 -7.80242 -5.24643 1.45073 1.48127 1.57406 2.54714
3.32633 3.65114 3.81660 3.86872 3.92635 4.04832 4.34600 4.52623
4.54475 4.61124 4.76409 4.84030 4.86654 4.92150 4.92938 4.97265
5.00560 5.02397 5.09305 5.13388 5.16423 5.19696 5.23827 5.28151
5.39561 5.44913 5.59804 5.64880 5.70475 5.78358 5.86504 6.05335
6.50858 7.26440 8.00586 8.46921 9.23732
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.029466 B = 0.006832 C = 0.006246
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.029922 B = 4097.194007 C = 4481.559093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.174 3.826
3 C -0.152 4.152
4 N -0.601 5.601
5 C -0.260 4.260
6 H 0.056 0.944
7 C -0.044 4.044
8 N -0.918 5.918
9 Si 0.955 3.045
10 H -0.272 1.272
11 H -0.295 1.295
12 H -0.291 1.291
13 C 0.146 3.854
14 C -0.125 4.125
15 C -0.097 4.097
16 C -0.118 4.118
17 C -0.140 4.140
18 C -0.135 4.135
19 C -0.131 4.131
20 H 0.044 0.956
21 H 0.041 0.959
22 H 0.034 0.966
23 H 0.057 0.943
24 H 0.038 0.962
25 H 0.059 0.941
26 H 0.054 0.946
27 H 0.246 0.754
28 H 0.054 0.946
29 H 0.034 0.966
30 H 0.050 0.950
31 H 0.022 0.978
32 H 0.058 0.942
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.083 0.917
36 H 0.052 0.948
37 H 0.079 0.921
38 H 0.078 0.922
39 H 0.067 0.933
40 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.983 7.062 9.816 13.492
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.068 3.932
3 C -0.210 4.210
4 N -0.322 5.322
5 C -0.390 4.390
6 H 0.074 0.926
7 C -0.240 4.240
8 N -0.564 5.564
9 Si 0.784 3.216
10 H -0.196 1.196
11 H -0.222 1.222
12 H -0.218 1.218
13 C 0.021 3.979
14 C -0.164 4.164
15 C -0.135 4.135
16 C -0.137 4.137
17 C -0.178 4.178
18 C -0.173 4.173
19 C -0.168 4.168
20 H 0.063 0.937
21 H 0.060 0.940
22 H 0.053 0.947
23 H 0.075 0.925
24 H 0.057 0.943
25 H 0.078 0.922
26 H 0.073 0.927
27 H 0.055 0.945
28 H 0.072 0.928
29 H 0.052 0.948
30 H 0.068 0.932
31 H 0.041 0.959
32 H 0.077 0.923
33 H 0.087 0.913
34 H 0.088 0.912
35 H 0.102 0.898
36 H 0.071 0.929
37 H 0.098 0.902
38 H 0.097 0.903
39 H 0.086 0.914
40 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.997 6.982 9.687 13.363
hybrid contribution 0.597 -1.199 -0.687 1.505
sum -5.401 5.784 9.000 11.984
Atomic orbital electron populations
1.22018 0.98001 0.99992 0.98838 1.20242 0.92296 0.90171 0.90523
1.22194 1.00094 0.97732 1.01013 1.44213 1.60123 1.27173 1.00678
1.19401 1.11993 0.99932 1.07713 0.92619 1.25648 0.98152 0.99313
1.00928 1.70188 1.24808 1.40989 1.20366 0.85399 0.79819 0.78714
0.77643 1.19616 1.22225 1.21771 1.20953 0.94333 0.96378 0.86266
1.22133 0.99087 0.98795 0.96431 1.21474 0.96630 0.99921 0.95458
1.22564 0.94644 0.99136 0.97309 1.23016 0.96868 1.00590 0.97283
1.22813 0.96360 1.02261 0.95820 1.22927 0.96421 1.01995 0.95487
0.93719 0.94046 0.94687 0.92460 0.94309 0.92220 0.92744 0.94477
0.92757 0.94758 0.93155 0.95939 0.92334 0.91305 0.91247 0.89806
0.92874 0.90238 0.90322 0.91376 0.89332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.71 8.09 71.98 0.58 -5.13 16
2 C 0.17 8.22 2.39 44.99 0.11 8.33 16
3 C -0.15 -5.80 9.14 71.98 0.66 -5.14 16
4 N -0.60 -29.96 2.41 -678.04 -1.64 -31.60 16
5 C -0.26 -14.45 9.57 84.03 0.80 -13.65 16
6 H 0.06 3.11 7.89 -2.91 -0.02 3.08 16
7 C -0.04 -2.49 4.85 84.86 0.41 -2.07 16
8 N -0.92 -53.66 10.40 21.65 0.23 -53.44 16
9 Si 0.95 45.60 29.59 68.60 2.03 47.63 16
10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16
12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
13 C 0.15 6.09 5.13 86.38 0.44 6.54 16
14 C -0.12 -4.85 5.26 30.59 0.16 -4.69 16
15 C -0.10 -2.85 5.04 30.60 0.15 -2.69 16
16 C -0.12 -3.14 3.64 -10.27 -0.04 -3.18 16
17 C -0.14 -3.38 7.65 31.18 0.24 -3.15 16
18 C -0.14 -2.65 8.09 31.18 0.25 -2.40 16
19 C -0.13 -2.72 7.65 31.12 0.24 -2.48 16
20 H 0.04 1.78 6.11 -2.39 -0.01 1.76 16
21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16
22 H 0.03 1.77 7.40 -2.39 -0.02 1.75 16
23 H 0.06 3.16 5.85 -2.39 -0.01 3.15 16
24 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16
25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
26 H 0.05 1.89 6.61 -2.38 -0.02 1.87 16
27 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16
28 H 0.05 2.03 6.34 -2.39 -0.02 2.02 16
29 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16
30 H 0.05 2.06 5.43 -2.38 -0.01 2.04 16
31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16
32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.07 1.83 7.88 -2.39 -0.02 1.81 16
34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16
35 H 0.08 1.92 7.92 -2.39 -0.02 1.91 16
36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16
37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
40 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16
Total: -1.00 -60.13 307.49 5.60 -54.53
By element:
Atomic # 1 Polarization: 11.61 SS G_CDS: 0.97 Total: 12.58 kcal
Atomic # 6 Polarization: -33.72 SS G_CDS: 4.01 Total: -29.70 kcal
Atomic # 7 Polarization: -83.63 SS G_CDS: -1.41 Total: -85.04 kcal
Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal
Total: -60.13 5.60 -54.53 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701519036.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.393 kcal
(2) G-P(sol) polarization free energy of solvation -60.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.737 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.862 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds