Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47262 * 2 1 4 4 N 1.46504 * 109.47101 * 119.99770 * 2 1 3 5 5 C 1.36932 * 120.00158 * 118.26224 * 4 2 1 6 6 H 1.07993 * 120.00598 * 150.54350 * 5 4 2 7 7 C 1.38814 * 119.99781 * 330.54061 * 5 4 2 8 8 N 1.31617 * 120.00264 * 341.56976 * 7 5 4 9 9 Si 1.86802 * 119.99812 * 161.56960 * 7 5 4 10 10 H 1.48501 * 109.47156 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47191 * 120.00119 * 9 7 5 12 12 H 1.48505 * 109.46865 * 239.99888 * 9 7 5 13 13 C 1.46505 * 119.99975 * 298.26527 * 4 2 1 14 14 C 1.52995 * 109.47215 * 89.99575 * 13 4 2 15 15 C 1.53004 * 109.47187 * 180.02562 * 14 13 4 16 16 C 1.52999 * 109.46966 * 180.02562 * 15 14 13 17 17 C 1.53784 * 113.61192 * 274.13118 * 16 15 14 18 18 C 1.53954 * 87.01974 * 220.05037 * 17 16 15 19 19 C 1.53780 * 113.61150 * 176.52978 * 16 15 14 20 20 H 1.08999 * 109.47572 * 300.00422 * 1 2 3 21 21 H 1.09002 * 109.46855 * 60.00310 * 1 2 3 22 22 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47650 * 240.00034 * 2 1 3 24 24 H 1.08998 * 109.47370 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.46934 * 300.00057 * 3 2 1 26 26 H 1.09007 * 109.46895 * 59.99430 * 3 2 1 27 27 H 0.97002 * 120.00052 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46851 * 329.99899 * 13 4 2 29 29 H 1.08995 * 109.47364 * 209.99780 * 13 4 2 30 30 H 1.09004 * 109.47324 * 300.00370 * 14 13 4 31 31 H 1.09003 * 109.47339 * 60.00017 * 14 13 4 32 32 H 1.08997 * 109.46961 * 299.99663 * 15 14 13 33 33 H 1.08994 * 109.46932 * 60.00297 * 15 14 13 34 34 H 1.08998 * 112.85039 * 45.33084 * 16 15 14 35 35 H 1.08995 * 113.61751 * 334.57588 * 17 16 15 36 36 H 1.09006 * 113.61083 * 105.47721 * 17 16 15 37 37 H 1.09000 * 113.53798 * 270.80945 * 18 17 16 38 38 H 1.09003 * 113.66451 * 139.93740 * 18 17 16 39 39 H 1.09001 * 113.61315 * 254.52477 * 19 16 15 40 40 H 1.09001 * 113.61555 * 25.34652 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7759 -1.8243 1.0710 6 1 3.5099 -2.0693 1.8243 7 6 2.6004 -2.6588 -0.0243 8 7 1.4985 -2.5825 -0.7401 9 14 3.9283 -3.8903 -0.4825 10 1 5.0593 -3.7771 0.4731 11 1 3.3688 -5.2648 -0.4276 12 1 4.4125 -3.6074 -1.8576 13 6 1.6960 -0.1682 2.5265 14 6 0.3860 -0.7896 3.0148 15 6 0.0490 -0.2435 4.4038 16 6 -1.2607 -0.8654 4.8923 17 6 -2.5150 -0.1152 4.4139 18 6 -3.0980 -0.3586 5.8178 19 6 -1.6472 -0.4452 6.3202 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.3761 -3.1654 -1.5057 28 1 1.5872 0.9152 2.4748 29 1 2.4983 -0.4201 3.2200 30 1 -0.4164 -0.5377 2.3213 31 1 0.4947 -1.8729 3.0664 32 1 0.8512 -0.4952 5.0975 33 1 -0.0599 0.8397 4.3517 34 1 -1.3059 -1.9418 4.7265 35 1 -2.3363 0.9368 4.1916 36 1 -3.0558 -0.6306 3.6201 37 1 -3.6469 -1.2962 5.9046 38 1 -3.6481 0.4936 6.2168 39 1 -1.4884 -1.2267 7.0633 40 1 -1.2296 0.5157 6.6207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701519036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = 2.862062 kcal Electronic energy + Delta-G solvation = -16314.700225 eV Core-core repulsion = 13936.399700 eV Total energy + Delta-G solvation = -2378.300525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83658 -38.47033 -34.49901 -33.67094 -31.50599 -28.23277 -27.69006 -26.42993 -25.54028 -23.65046 -21.82613 -20.87100 -20.13161 -18.68570 -16.71496 -16.47928 -16.22989 -15.66858 -15.23936 -14.98608 -14.40086 -14.26115 -13.59646 -13.46432 -13.25351 -13.17871 -13.02827 -12.86698 -12.70520 -12.66941 -12.18420 -12.07062 -11.90207 -11.83125 -11.54931 -11.33903 -11.18477 -11.14663 -10.83623 -10.78924 -10.38888 -8.53639 -7.80242 -5.24643 1.45073 1.48127 1.57406 2.54714 3.32633 3.65114 3.81660 3.86872 3.92635 4.04832 4.34600 4.52623 4.54475 4.61124 4.76409 4.84030 4.86654 4.92150 4.92938 4.97265 5.00560 5.02397 5.09305 5.13388 5.16423 5.19696 5.23827 5.28151 5.39561 5.44913 5.59804 5.64880 5.70475 5.78358 5.86504 6.05335 6.50858 7.26440 8.00586 8.46921 9.23732 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029466 B = 0.006832 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.029922 B = 4097.194007 C = 4481.559093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.174 3.826 3 C -0.152 4.152 4 N -0.601 5.601 5 C -0.260 4.260 6 H 0.056 0.944 7 C -0.044 4.044 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.295 1.295 12 H -0.291 1.291 13 C 0.146 3.854 14 C -0.125 4.125 15 C -0.097 4.097 16 C -0.118 4.118 17 C -0.140 4.140 18 C -0.135 4.135 19 C -0.131 4.131 20 H 0.044 0.956 21 H 0.041 0.959 22 H 0.034 0.966 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.246 0.754 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 7.062 9.816 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.068 3.932 3 C -0.210 4.210 4 N -0.322 5.322 5 C -0.390 4.390 6 H 0.074 0.926 7 C -0.240 4.240 8 N -0.564 5.564 9 Si 0.784 3.216 10 H -0.196 1.196 11 H -0.222 1.222 12 H -0.218 1.218 13 C 0.021 3.979 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.137 4.137 17 C -0.178 4.178 18 C -0.173 4.173 19 C -0.168 4.168 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.997 6.982 9.687 13.363 hybrid contribution 0.597 -1.199 -0.687 1.505 sum -5.401 5.784 9.000 11.984 Atomic orbital electron populations 1.22018 0.98001 0.99992 0.98838 1.20242 0.92296 0.90171 0.90523 1.22194 1.00094 0.97732 1.01013 1.44213 1.60123 1.27173 1.00678 1.19401 1.11993 0.99932 1.07713 0.92619 1.25648 0.98152 0.99313 1.00928 1.70188 1.24808 1.40989 1.20366 0.85399 0.79819 0.78714 0.77643 1.19616 1.22225 1.21771 1.20953 0.94333 0.96378 0.86266 1.22133 0.99087 0.98795 0.96431 1.21474 0.96630 0.99921 0.95458 1.22564 0.94644 0.99136 0.97309 1.23016 0.96868 1.00590 0.97283 1.22813 0.96360 1.02261 0.95820 1.22927 0.96421 1.01995 0.95487 0.93719 0.94046 0.94687 0.92460 0.94309 0.92220 0.92744 0.94477 0.92757 0.94758 0.93155 0.95939 0.92334 0.91305 0.91247 0.89806 0.92874 0.90238 0.90322 0.91376 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.09 71.98 0.58 -5.13 16 2 C 0.17 8.22 2.39 44.99 0.11 8.33 16 3 C -0.15 -5.80 9.14 71.98 0.66 -5.14 16 4 N -0.60 -29.96 2.41 -678.04 -1.64 -31.60 16 5 C -0.26 -14.45 9.57 84.03 0.80 -13.65 16 6 H 0.06 3.11 7.89 -2.91 -0.02 3.08 16 7 C -0.04 -2.49 4.85 84.86 0.41 -2.07 16 8 N -0.92 -53.66 10.40 21.65 0.23 -53.44 16 9 Si 0.95 45.60 29.59 68.60 2.03 47.63 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 C 0.15 6.09 5.13 86.38 0.44 6.54 16 14 C -0.12 -4.85 5.26 30.59 0.16 -4.69 16 15 C -0.10 -2.85 5.04 30.60 0.15 -2.69 16 16 C -0.12 -3.14 3.64 -10.27 -0.04 -3.18 16 17 C -0.14 -3.38 7.65 31.18 0.24 -3.15 16 18 C -0.14 -2.65 8.09 31.18 0.25 -2.40 16 19 C -0.13 -2.72 7.65 31.12 0.24 -2.48 16 20 H 0.04 1.78 6.11 -2.39 -0.01 1.76 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.03 1.77 7.40 -2.39 -0.02 1.75 16 23 H 0.06 3.16 5.85 -2.39 -0.01 3.15 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.89 6.61 -2.38 -0.02 1.87 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 28 H 0.05 2.03 6.34 -2.39 -0.02 2.02 16 29 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 30 H 0.05 2.06 5.43 -2.38 -0.01 2.04 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.83 7.88 -2.39 -0.02 1.81 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 1.92 7.92 -2.39 -0.02 1.91 16 36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -60.13 307.49 5.60 -54.53 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.97 Total: 12.58 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 4.01 Total: -29.70 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -1.41 Total: -85.04 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -60.13 5.60 -54.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701519036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.393 kcal (2) G-P(sol) polarization free energy of solvation -60.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds