Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 115.55053 * 2 1 4 4 C 1.53000 * 117.49506 * 145.66657 * 2 1 3 5 5 C 1.53002 * 60.02940 * 107.50086 * 4 2 1 6 6 C 1.53002 * 117.49773 * 252.51785 * 5 4 2 7 7 C 1.52999 * 117.49968 * 107.50530 * 5 4 2 8 8 N 1.46898 * 109.47542 * 111.38757 * 7 5 4 9 9 C 1.46901 * 110.99953 * 293.95315 * 8 7 5 10 10 C 1.46899 * 110.99794 * 169.99754 * 8 7 5 11 11 C 1.53002 * 109.46861 * 190.00009 * 10 8 7 12 12 C 1.53000 * 109.47299 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47234 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99950 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99753 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00264 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99748 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47162 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46873 * 120.00096 * 17 15 13 20 20 H 1.48496 * 109.47019 * 239.99924 * 17 15 13 21 21 H 1.09004 * 109.46917 * 325.72451 * 1 2 3 22 22 H 1.09001 * 109.46886 * 85.72380 * 1 2 3 23 23 H 1.08995 * 109.47352 * 205.72334 * 1 2 3 24 24 H 1.09002 * 117.49833 * 215.00191 * 4 2 1 25 25 H 1.09002 * 117.49953 * 0.02562 * 4 2 1 26 26 H 1.09005 * 109.47034 * 8.60952 * 6 5 4 27 27 H 1.08996 * 109.47323 * 128.60841 * 6 5 4 28 28 H 1.08997 * 109.47719 * 248.61411 * 6 5 4 29 29 H 1.09000 * 109.46660 * 231.39296 * 7 5 4 30 30 H 1.08997 * 109.47098 * 351.38476 * 7 5 4 31 31 H 1.09005 * 109.47108 * 60.00074 * 9 8 7 32 32 H 1.08995 * 109.46833 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.47201 * 300.00036 * 9 8 7 34 34 H 1.09000 * 109.47298 * 309.99932 * 10 8 7 35 35 H 1.08995 * 109.46998 * 70.00508 * 10 8 7 36 36 H 1.09000 * 109.47102 * 300.00043 * 11 10 8 37 37 H 1.09005 * 109.47416 * 59.99881 * 11 10 8 38 38 H 1.09000 * 109.46832 * 299.99906 * 12 11 10 39 39 H 1.08996 * 109.46734 * 59.99754 * 12 11 10 40 40 H 0.96997 * 119.99999 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 0.7655 5 6 2.2371 -1.1219 -0.7646 6 6 1.3597 -2.1575 -1.4706 7 6 3.5501 -0.7776 -1.4707 8 7 4.0726 -1.9743 -2.1437 9 6 4.4599 -3.0008 -1.1668 10 6 5.1982 -1.6338 -3.0240 11 6 5.5529 -2.8446 -3.8896 12 6 6.7257 -2.4903 -4.8061 13 6 7.0747 -3.6826 -5.6591 14 1 6.5161 -4.6013 -5.5574 15 6 8.1070 -3.6005 -6.5693 16 7 8.7868 -2.4816 -6.6935 17 14 8.5400 -5.0788 -7.6262 18 1 7.6313 -6.2061 -7.2967 19 1 8.3878 -4.7237 -9.0601 20 1 9.9449 -5.4813 -7.3624 21 1 -0.3633 0.8492 0.5788 22 1 -0.3633 0.0766 -1.0248 23 1 -0.3634 -0.9258 0.4460 24 1 3.1713 -0.8746 1.2690 25 1 1.6111 -1.8582 1.2687 26 1 0.7302 -2.6611 -0.7370 27 1 0.7306 -1.6587 -2.2078 28 1 1.9931 -2.8906 -1.9700 29 1 3.3716 0.0052 -2.2079 30 1 4.2761 -0.4271 -0.7371 31 1 3.5903 -3.2848 -0.5741 32 1 4.8436 -3.8755 -1.6919 33 1 5.2335 -2.6035 -0.5097 34 1 4.9181 -0.7982 -3.6654 35 1 6.0608 -1.3544 -2.4192 36 1 5.8331 -3.6802 -3.2482 37 1 4.6902 -3.1241 -4.4945 38 1 6.4460 -1.6546 -5.4475 39 1 7.5882 -2.2110 -4.2010 40 1 9.5133 -2.4240 -7.3336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704045685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = -11.117268 kcal Electronic energy + Delta-G solvation = -15604.346137 eV Core-core repulsion = 13225.439422 eV Total energy + Delta-G solvation = -2378.906715 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18036 -37.92001 -35.56356 -33.28159 -30.42521 -28.85210 -28.54658 -28.13787 -25.63038 -23.23223 -21.79898 -21.46235 -19.38315 -18.47524 -16.75643 -16.60341 -16.55167 -16.08634 -15.40219 -14.82321 -14.49107 -14.38555 -14.15677 -13.78656 -13.62528 -13.14600 -12.98844 -12.81108 -12.70935 -12.68465 -12.50860 -12.38917 -12.25707 -12.19242 -11.85852 -11.43132 -11.35840 -11.13730 -10.61261 -10.55139 -10.31720 -9.24172 -8.20052 -6.31043 1.40178 1.40602 1.54361 2.41160 2.76045 3.04852 3.13052 3.79456 3.94487 3.98492 4.15108 4.18559 4.31024 4.47486 4.50280 4.55747 4.70709 4.72816 4.81081 4.92919 4.94334 4.94990 4.98401 5.06758 5.07824 5.11729 5.17755 5.22737 5.28156 5.30843 5.46381 5.53025 5.63392 5.75077 5.86290 6.11652 6.20901 6.28780 6.86004 7.38239 8.92193 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.063940 B = 0.004174 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.804482 B = 6706.641383 C = 6789.556811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.146 4.146 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.123 4.123 6 C -0.105 4.105 7 C 0.091 3.909 8 N -0.539 5.539 9 C 0.026 3.974 10 C 0.067 3.933 11 C -0.088 4.088 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.052 0.948 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.041 2.886 14.537 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.165 4.165 3 H 0.119 0.881 4 C -0.206 4.206 5 C -0.123 4.123 6 C -0.162 4.162 7 C -0.037 4.037 8 N -0.262 5.262 9 C -0.122 4.122 10 C -0.061 4.061 11 C -0.126 4.126 12 C -0.013 4.013 13 C -0.579 4.579 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.287 2.766 14.160 21.020 hybrid contribution 1.440 -0.012 -0.248 1.461 sum -13.847 2.755 13.912 19.821 Atomic orbital electron populations 1.21315 0.91814 1.02310 1.01963 1.22527 0.96083 0.94132 1.03737 0.88090 1.23350 1.02436 1.01690 0.93170 1.21481 0.96760 1.00966 0.93135 1.21199 0.97992 0.97456 0.99532 1.21623 0.93956 0.91661 0.96417 1.61969 1.32606 1.10889 1.20776 1.22426 1.00086 0.95291 0.94379 1.22025 0.91112 0.98148 0.94824 1.21384 0.97647 0.96690 0.96853 1.18982 0.93039 0.95530 0.93722 1.21718 1.16157 0.99353 1.20701 0.92267 1.26004 0.96109 0.99148 0.98697 1.70104 1.22325 1.27967 1.37090 0.85378 0.78157 0.79177 0.78211 1.18573 1.20294 1.20298 0.91403 0.92329 0.92193 0.89314 0.88027 0.92302 0.92997 0.91615 0.91163 0.95043 0.89814 0.92008 0.96174 0.91609 0.95997 0.93097 0.92964 0.99028 0.99250 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.22 71.98 0.66 -1.03 16 2 C -0.15 -2.55 6.13 -10.77 -0.07 -2.62 16 3 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.17 -2.99 9.44 30.60 0.29 -2.71 16 5 C -0.12 -2.57 1.59 -52.16 -0.08 -2.65 16 6 C -0.10 -2.22 8.28 71.98 0.60 -1.63 16 7 C 0.09 2.32 5.10 86.30 0.44 2.76 16 8 N -0.54 -16.14 3.52 -922.47 -3.25 -19.39 16 9 C 0.03 0.71 8.67 127.69 1.11 1.82 16 10 C 0.07 2.41 4.96 86.30 0.43 2.84 16 11 C -0.09 -3.78 5.08 30.60 0.16 -3.63 16 12 C 0.02 1.36 4.97 29.85 0.15 1.51 16 13 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 16 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 17 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 22 H 0.06 0.88 8.02 -2.39 -0.02 0.86 16 23 H 0.06 0.81 7.78 -2.39 -0.02 0.79 16 24 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 25 H 0.10 1.60 7.96 -2.39 -0.02 1.58 16 26 H 0.06 1.06 7.78 -2.38 -0.02 1.04 16 27 H 0.05 1.10 8.02 -2.39 -0.02 1.08 16 28 H 0.06 1.65 6.02 -2.39 -0.01 1.63 16 29 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 30 H 0.03 0.79 7.88 -2.39 -0.02 0.77 16 31 H 0.08 1.96 6.52 -2.38 -0.02 1.94 16 32 H 0.06 1.82 6.30 -2.39 -0.02 1.80 16 33 H 0.02 0.53 8.14 -2.39 -0.02 0.52 16 34 H 0.07 2.39 7.93 -2.39 -0.02 2.37 16 35 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 36 H 0.05 2.14 6.47 -2.39 -0.02 2.12 16 37 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -63.38 315.35 4.40 -58.98 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.96 Total: 7.44 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 4.37 Total: -36.46 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -2.96 Total: -77.01 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.38 4.40 -58.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704045685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.861 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds