Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 H 1.09003 * 109.46784 * 302.43746 * 3 2 1 5 5 C 1.50703 * 109.46906 * 182.44546 * 3 2 1 6 6 H 1.07997 * 119.99847 * 239.99971 * 5 3 2 7 7 C 1.37879 * 120.00216 * 59.99674 * 5 3 2 8 8 N 1.31513 * 119.99670 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99806 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46932 * 60.00389 * 9 7 5 11 11 H 1.48500 * 109.46704 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47331 * 300.00177 * 9 7 5 13 13 N 1.46896 * 109.47156 * 62.44459 * 3 2 1 14 14 C 1.46898 * 111.00238 * 64.39718 * 13 3 2 15 15 C 1.46903 * 110.99803 * 188.35060 * 13 3 2 16 16 C 1.53005 * 109.46975 * 164.04689 * 15 13 3 17 17 C 1.52998 * 115.54881 * 325.67090 * 16 15 13 18 18 C 1.53072 * 117.52867 * 111.38737 * 16 15 13 19 19 C 1.53000 * 59.98603 * 107.46569 * 18 16 15 20 20 H 1.09000 * 117.49593 * 107.49584 * 19 18 16 21 21 C 1.52996 * 117.49997 * 252.49851 * 19 18 16 22 22 H 1.08997 * 109.46854 * 174.96063 * 1 2 3 23 23 H 1.08995 * 109.46675 * 294.96184 * 1 2 3 24 24 H 1.09000 * 109.46845 * 54.95720 * 1 2 3 25 25 H 1.08994 * 109.46750 * 239.99573 * 2 1 3 26 26 H 1.08998 * 109.47101 * 119.99975 * 2 1 3 27 27 H 0.97001 * 119.99399 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47122 * 183.95287 * 14 13 3 29 29 H 1.09003 * 109.47100 * 303.95156 * 14 13 3 30 30 H 1.08996 * 109.46889 * 63.95455 * 14 13 3 31 31 H 1.09008 * 109.47250 * 44.05029 * 15 13 3 32 32 H 1.08996 * 109.47315 * 284.04820 * 15 13 3 33 33 H 1.09001 * 109.47057 * 274.32531 * 17 16 15 34 34 H 1.08992 * 109.47052 * 34.32893 * 17 16 15 35 35 H 1.09005 * 109.46808 * 154.33134 * 17 16 15 36 36 H 1.08997 * 117.51417 * 359.97438 * 18 16 15 37 37 H 1.09002 * 117.48982 * 214.95277 * 18 16 15 38 38 H 1.08995 * 109.47485 * 128.74644 * 21 19 18 39 39 H 1.09003 * 109.47169 * 8.73854 * 21 19 18 40 40 H 1.09003 * 109.46757 * 248.74598 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6414 1.9687 -0.8674 5 6 3.5459 1.4429 -0.0606 6 1 4.1181 1.8991 0.7336 7 6 4.1930 0.8607 -1.1299 8 7 3.4961 0.3056 -2.0972 9 14 6.0595 0.8607 -1.2046 10 1 6.6021 0.1431 -0.0231 11 1 6.5051 0.1776 -2.4456 12 1 6.5550 2.2605 -1.2042 13 7 1.5992 2.1177 1.2278 14 6 2.2026 1.4979 2.4152 15 6 1.8985 3.5549 1.1747 16 6 1.0937 4.2836 2.2528 17 6 -0.2950 3.7097 2.5405 18 6 1.8679 4.8840 3.4290 19 6 1.2678 5.7999 2.3604 20 1 0.3928 6.3886 2.6359 21 6 2.2336 6.4713 1.3820 22 1 -0.3633 -1.0237 -0.0903 23 1 -0.3632 0.4337 0.9316 24 1 -0.3633 0.5901 -0.8414 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.9514 -0.1043 -2.8493 28 1 1.8056 1.9710 3.3134 29 1 1.9655 0.4341 2.4298 30 1 3.2842 1.6288 2.3833 31 1 1.6291 3.9462 0.1936 32 1 2.9632 3.7111 1.3482 33 1 -1.0152 4.1328 1.8402 34 1 -0.2710 2.6260 2.4268 35 1 -0.5883 3.9617 3.5597 36 1 2.9507 4.7595 3.4351 37 1 1.3875 4.8699 4.4073 38 1 1.8983 6.2929 0.3604 39 1 3.2325 6.0555 1.5145 40 1 2.2582 7.5440 1.5743 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704051141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = 14.127125 kcal Electronic energy + Delta-G solvation = -16750.398281 eV Core-core repulsion = 14372.586246 eV Total energy + Delta-G solvation = -2377.812036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.73359 -36.42388 -32.61852 -31.15253 -29.53187 -26.89678 -26.71133 -26.35145 -23.83678 -21.97873 -20.78071 -18.91559 -17.90219 -16.33928 -15.36393 -14.88313 -14.24325 -14.09119 -13.46904 -13.05189 -12.92359 -12.63982 -12.54079 -12.01726 -11.89032 -11.58945 -11.54485 -11.18387 -11.12301 -10.87814 -10.80662 -10.71546 -10.50429 -10.44886 -9.99561 -9.73750 -9.53546 -9.21041 -9.03696 -8.96602 -8.34182 -7.05530 -5.95956 -4.09244 3.28294 3.33652 3.36153 4.07783 4.40970 4.96241 5.04997 5.19217 5.28601 5.51628 5.59727 5.68881 5.99955 6.05687 6.07804 6.16743 6.23941 6.27132 6.29772 6.39169 6.47992 6.52384 6.56167 6.59399 6.69682 6.74681 6.80749 6.86885 6.95056 7.16399 7.23779 7.40314 7.65469 7.79920 8.03361 8.21208 8.38224 8.52722 9.01412 9.58056 11.02921 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.009404 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.347829 B = 2976.752873 C = 3681.388989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.532 5.532 14 C 0.035 3.965 15 C 0.105 3.895 16 C -0.104 4.104 17 C -0.107 4.107 18 C -0.179 4.179 19 C -0.157 4.157 20 H 0.096 0.904 21 C -0.120 4.120 22 H 0.024 0.976 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 6.438 7.287 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.255 5.255 14 C -0.113 4.113 15 C -0.024 4.024 16 C -0.105 4.105 17 C -0.164 4.164 18 C -0.216 4.216 19 C -0.176 4.176 20 H 0.114 0.886 21 C -0.177 4.177 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.880 6.269 7.124 10.671 hybrid contribution 2.084 0.113 -0.117 2.090 sum -2.796 6.382 7.007 9.882 Atomic orbital electron populations 1.21693 0.98873 0.98240 1.00537 1.21596 0.92156 0.99228 1.01925 1.19292 0.92522 0.90987 0.86479 0.94582 1.21723 0.92824 1.37297 1.06245 0.92719 1.24904 0.97799 0.95125 0.95578 1.69867 1.34983 1.37694 1.09887 0.86769 0.86427 0.78138 0.77321 1.20400 1.21256 1.20436 1.62375 1.57658 1.01204 1.04311 1.22180 0.97388 0.99148 0.92628 1.21302 0.95664 0.89310 0.96096 1.21733 0.97471 0.92965 0.98315 1.21247 0.93018 1.03380 0.98785 1.23256 0.99520 1.05103 0.93719 1.22394 1.01090 0.92993 1.01080 0.88621 1.21305 0.98503 0.99186 0.98741 0.95735 0.93518 0.94228 0.89141 0.94843 0.92897 0.94001 0.92400 0.95580 0.91621 0.94874 0.93291 0.89583 0.94380 0.89378 0.89695 0.92110 0.92522 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.71 37.16 0.36 -2.40 16 2 C -0.11 -2.61 5.06 -26.73 -0.14 -2.75 16 3 C 0.21 5.21 1.73 -68.87 -0.12 5.09 16 4 H 0.04 0.98 7.90 -51.93 -0.41 0.57 16 5 C -0.54 -14.41 7.30 -34.44 -0.25 -14.66 16 6 H 0.05 1.47 5.89 -52.49 -0.31 1.16 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.87 11.30 55.43 0.63 -24.25 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.53 -11.03 2.72 -236.28 -0.64 -11.67 16 14 C 0.04 0.70 8.36 60.06 0.50 1.20 16 15 C 0.11 2.03 3.68 -3.82 -0.01 2.01 16 16 C -0.10 -1.66 1.71 -154.47 -0.26 -1.92 16 17 C -0.11 -1.61 9.51 37.16 0.35 -1.26 16 18 C -0.18 -2.56 9.47 -26.69 -0.25 -2.81 16 19 C -0.16 -2.19 6.12 -90.62 -0.56 -2.74 16 20 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 21 C -0.12 -1.62 9.21 37.16 0.34 -1.28 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 2.39 6.01 -51.93 -0.31 2.08 16 26 H 0.03 0.78 6.31 -51.93 -0.33 0.45 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 28 H 0.04 0.73 7.22 -51.93 -0.38 0.36 16 29 H 0.06 1.15 6.19 -51.93 -0.32 0.83 16 30 H 0.03 0.55 6.33 -51.93 -0.33 0.23 16 31 H 0.07 1.35 7.71 -51.92 -0.40 0.94 16 32 H 0.03 0.69 7.05 -51.93 -0.37 0.32 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.43 6.39 -51.93 -0.33 1.10 16 35 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 36 H 0.09 1.31 7.96 -51.93 -0.41 0.89 16 37 H 0.08 1.10 8.05 -51.93 -0.42 0.69 16 38 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 39 H 0.06 0.81 7.77 -51.93 -0.40 0.40 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -26.63 305.61 -7.76 -34.39 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.20 Total: 0.52 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -0.13 Total: -19.76 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.02 Total: -35.92 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.63 -7.76 -34.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704051141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.517 kcal (2) G-P(sol) polarization free energy of solvation -26.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds