Wall clock time and date at job start Mon Mar 30 2020 02:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 H 1.09003 * 109.46784 * 302.43746 * 3 2 1 5 5 C 1.50703 * 109.46906 * 182.44546 * 3 2 1 6 6 H 1.07997 * 119.99847 * 239.99971 * 5 3 2 7 7 C 1.37879 * 120.00216 * 59.99674 * 5 3 2 8 8 N 1.31513 * 119.99670 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99806 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46932 * 60.00389 * 9 7 5 11 11 H 1.48500 * 109.46704 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47331 * 300.00177 * 9 7 5 13 13 N 1.46896 * 109.47156 * 62.44459 * 3 2 1 14 14 C 1.46898 * 111.00238 * 64.39718 * 13 3 2 15 15 C 1.46903 * 110.99803 * 188.35060 * 13 3 2 16 16 C 1.53005 * 109.46975 * 164.04689 * 15 13 3 17 17 C 1.52998 * 115.54881 * 325.67090 * 16 15 13 18 18 C 1.53072 * 117.52867 * 111.38737 * 16 15 13 19 19 C 1.53000 * 59.98603 * 107.46569 * 18 16 15 20 20 H 1.09000 * 117.49593 * 107.49584 * 19 18 16 21 21 C 1.52996 * 117.49997 * 252.49851 * 19 18 16 22 22 H 1.08997 * 109.46854 * 174.96063 * 1 2 3 23 23 H 1.08995 * 109.46675 * 294.96184 * 1 2 3 24 24 H 1.09000 * 109.46845 * 54.95720 * 1 2 3 25 25 H 1.08994 * 109.46750 * 239.99573 * 2 1 3 26 26 H 1.08998 * 109.47101 * 119.99975 * 2 1 3 27 27 H 0.97001 * 119.99399 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47122 * 183.95287 * 14 13 3 29 29 H 1.09003 * 109.47100 * 303.95156 * 14 13 3 30 30 H 1.08996 * 109.46889 * 63.95455 * 14 13 3 31 31 H 1.09008 * 109.47250 * 44.05029 * 15 13 3 32 32 H 1.08996 * 109.47315 * 284.04820 * 15 13 3 33 33 H 1.09001 * 109.47057 * 274.32531 * 17 16 15 34 34 H 1.08992 * 109.47052 * 34.32893 * 17 16 15 35 35 H 1.09005 * 109.46808 * 154.33134 * 17 16 15 36 36 H 1.08997 * 117.51417 * 359.97438 * 18 16 15 37 37 H 1.09002 * 117.48982 * 214.95277 * 18 16 15 38 38 H 1.08995 * 109.47485 * 128.74644 * 21 19 18 39 39 H 1.09003 * 109.47169 * 8.73854 * 21 19 18 40 40 H 1.09003 * 109.46757 * 248.74598 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6414 1.9687 -0.8674 5 6 3.5459 1.4429 -0.0606 6 1 4.1181 1.8991 0.7336 7 6 4.1930 0.8607 -1.1299 8 7 3.4961 0.3056 -2.0972 9 14 6.0595 0.8607 -1.2046 10 1 6.6021 0.1431 -0.0231 11 1 6.5051 0.1776 -2.4456 12 1 6.5550 2.2605 -1.2042 13 7 1.5992 2.1177 1.2278 14 6 2.2026 1.4979 2.4152 15 6 1.8985 3.5549 1.1747 16 6 1.0937 4.2836 2.2528 17 6 -0.2950 3.7097 2.5405 18 6 1.8679 4.8840 3.4290 19 6 1.2678 5.7999 2.3604 20 1 0.3928 6.3886 2.6359 21 6 2.2336 6.4713 1.3820 22 1 -0.3633 -1.0237 -0.0903 23 1 -0.3632 0.4337 0.9316 24 1 -0.3633 0.5901 -0.8414 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.9514 -0.1043 -2.8493 28 1 1.8056 1.9710 3.3134 29 1 1.9655 0.4341 2.4298 30 1 3.2842 1.6288 2.3833 31 1 1.6291 3.9462 0.1936 32 1 2.9632 3.7111 1.3482 33 1 -1.0152 4.1328 1.8402 34 1 -0.2710 2.6260 2.4268 35 1 -0.5883 3.9617 3.5597 36 1 2.9507 4.7595 3.4351 37 1 1.3875 4.8699 4.4073 38 1 1.8983 6.2929 0.3604 39 1 3.2325 6.0555 1.5145 40 1 2.2582 7.5440 1.5743 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704051141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:36 Heat of formation + Delta-G solvation = 1.307788 kcal Electronic energy + Delta-G solvation = -16750.954170 eV Core-core repulsion = 14372.586246 eV Total energy + Delta-G solvation = -2378.367924 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12218 -38.07482 -34.56194 -32.98350 -30.74380 -28.65524 -28.31345 -27.65065 -25.71369 -23.70395 -21.91607 -20.82308 -19.24735 -18.35869 -17.12421 -16.34217 -15.93140 -15.63679 -15.07764 -14.66337 -14.44035 -14.25433 -13.78687 -13.54666 -13.34195 -13.14151 -13.00923 -12.81374 -12.71780 -12.56358 -12.46040 -12.27446 -12.14520 -11.90405 -11.85146 -11.57006 -11.30241 -10.99970 -10.52303 -10.43051 -10.21041 -8.87844 -8.01729 -6.24870 1.36034 1.36886 1.44046 2.39189 2.88672 3.15350 3.47478 3.88162 4.00520 4.15861 4.36427 4.49266 4.54280 4.69883 4.75975 4.77869 4.87581 4.93096 4.94994 4.97083 4.99299 5.05400 5.15445 5.16321 5.19686 5.28890 5.33019 5.38395 5.45559 5.50914 5.52934 5.65699 5.71581 5.83026 6.08975 6.23421 6.42053 6.71947 6.97606 7.45856 8.92137 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.009404 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.347829 B = 2976.752873 C = 3681.388989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.524 5.524 14 C 0.044 3.956 15 C 0.113 3.887 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.169 4.169 19 C -0.144 4.144 20 H 0.118 0.882 21 C -0.122 4.122 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.031 0.969 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.005 0.995 31 H 0.043 0.957 32 H 0.011 0.989 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 7.287 8.982 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.246 5.246 14 C -0.105 4.105 15 C -0.016 4.016 16 C -0.124 4.124 17 C -0.158 4.158 18 C -0.206 4.206 19 C -0.163 4.163 20 H 0.136 0.864 21 C -0.179 4.179 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.406 7.125 8.832 12.570 hybrid contribution 2.250 -0.112 -0.646 2.344 sum -3.155 7.013 8.187 11.232 Atomic orbital electron populations 1.21549 0.96135 0.99531 1.00866 1.21434 0.94559 0.98091 1.00290 1.19064 0.91301 0.91470 0.86932 0.98218 1.21960 0.94148 1.36893 1.05993 0.93493 1.25591 1.01756 0.95033 0.95424 1.69995 1.36377 1.38298 1.10274 0.85855 0.81731 0.78092 0.77416 1.19957 1.20783 1.20220 1.62355 1.57189 1.01850 1.03239 1.22140 0.96076 0.99234 0.93030 1.21197 0.95083 0.88677 0.96637 1.21593 0.97887 0.94424 0.98469 1.21177 0.92285 1.02052 1.00255 1.23295 0.99002 1.04042 0.94235 1.22514 1.01604 0.91703 1.00440 0.86392 1.21327 0.97648 1.00746 0.98195 0.93741 0.92253 0.94937 0.92176 0.94933 0.92958 0.91250 0.92618 0.97623 0.93811 0.97026 0.93126 0.91367 0.92032 0.90334 0.87464 0.93176 0.93925 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.71 71.99 0.70 -4.22 16 2 C -0.11 -5.03 5.06 30.60 0.15 -4.88 16 3 C 0.22 11.01 1.73 44.17 0.08 11.09 16 4 H 0.00 -0.01 7.90 -2.39 -0.02 -0.03 16 5 C -0.55 -30.04 7.30 25.60 0.19 -29.85 16 6 H 0.05 2.59 5.89 -2.91 -0.02 2.57 16 7 C 0.02 1.21 5.30 84.66 0.45 1.66 16 8 N -0.91 -52.34 11.30 21.45 0.24 -52.09 16 9 Si 0.94 43.99 29.54 68.60 2.03 46.01 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.52 -21.84 2.72 -901.45 -2.45 -24.29 16 14 C 0.04 1.70 8.36 127.69 1.07 2.77 16 15 C 0.11 4.41 3.68 86.30 0.32 4.73 16 16 C -0.12 -3.71 1.71 -52.16 -0.09 -3.80 16 17 C -0.10 -2.77 9.51 71.98 0.68 -2.09 16 18 C -0.17 -4.38 9.47 30.62 0.29 -4.09 16 19 C -0.14 -3.65 6.12 -10.79 -0.07 -3.72 16 20 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 21 C -0.12 -3.13 9.21 71.98 0.66 -2.47 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 2.20 7.83 -2.39 -0.02 2.18 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 3.26 6.01 -2.39 -0.01 3.24 16 26 H 0.03 1.52 6.31 -2.39 -0.02 1.51 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.60 16 28 H 0.07 2.31 7.22 -2.39 -0.02 2.29 16 29 H 0.06 2.17 6.19 -2.39 -0.01 2.16 16 30 H 0.01 0.23 6.33 -2.39 -0.02 0.21 16 31 H 0.04 1.86 7.71 -2.38 -0.02 1.85 16 32 H 0.01 0.49 7.05 -2.39 -0.02 0.48 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.07 2.13 6.39 -2.39 -0.02 2.11 16 35 H 0.06 1.40 7.90 -2.38 -0.02 1.39 16 36 H 0.08 2.20 7.96 -2.39 -0.02 2.18 16 37 H 0.11 2.34 8.05 -2.39 -0.02 2.32 16 38 H 0.05 1.38 8.02 -2.39 -0.02 1.36 16 39 H 0.04 1.19 7.77 -2.39 -0.02 1.17 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -57.68 305.61 5.23 -52.45 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.98 Total: 12.80 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 4.43 Total: -34.88 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -2.21 Total: -76.38 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -57.68 5.23 -52.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704051141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.756 kcal (2) G-P(sol) polarization free energy of solvation -57.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds