Wall clock time and date at job start Mon Mar 30 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46820 * 2 1 4 4 H 1.09000 * 109.46841 * 298.38061 * 3 2 1 5 5 C 1.50701 * 109.46789 * 178.38399 * 3 2 1 6 6 H 1.08000 * 120.00104 * 239.99656 * 5 3 2 7 7 C 1.37874 * 120.00053 * 60.00140 * 5 3 2 8 8 N 1.31514 * 120.00116 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47439 * 119.99598 * 9 7 5 12 12 H 1.48498 * 109.47157 * 239.99778 * 9 7 5 13 13 N 1.46899 * 109.46851 * 58.38379 * 3 2 1 14 14 C 1.46898 * 110.99921 * 64.94000 * 13 3 2 15 15 C 1.46903 * 110.99366 * 188.88615 * 13 3 2 16 16 C 1.53004 * 109.47236 * 76.12975 * 15 13 3 17 17 C 1.53001 * 115.54573 * 64.58118 * 16 15 13 18 18 C 1.52995 * 117.49653 * 278.91447 * 16 15 13 19 19 C 1.52993 * 117.50014 * 210.25124 * 16 15 13 20 20 H 1.09004 * 117.49982 * 215.02465 * 19 16 15 21 21 C 1.53005 * 117.49898 * 0.02562 * 19 16 15 22 22 H 1.09004 * 109.46453 * 184.55009 * 1 2 3 23 23 H 1.08997 * 109.46927 * 304.54673 * 1 2 3 24 24 H 1.08997 * 109.47115 * 64.55147 * 1 2 3 25 25 H 1.08996 * 109.46828 * 239.99783 * 2 1 3 26 26 H 1.09001 * 109.46855 * 120.00108 * 2 1 3 27 27 H 0.97005 * 120.00463 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46784 * 187.20487 * 14 13 3 29 29 H 1.08997 * 109.47073 * 307.19690 * 14 13 3 30 30 H 1.08999 * 109.47495 * 67.20457 * 14 13 3 31 31 H 1.08995 * 109.47786 * 316.12915 * 15 13 3 32 32 H 1.08999 * 109.46978 * 196.12571 * 15 13 3 33 33 H 1.08999 * 109.47546 * 62.89899 * 17 16 15 34 34 H 1.09000 * 109.47198 * 302.88826 * 17 16 15 35 35 H 1.09007 * 109.46689 * 182.89537 * 17 16 15 36 36 H 1.08999 * 117.50405 * 359.97287 * 18 16 15 37 37 H 1.09005 * 117.49650 * 144.99851 * 18 16 15 38 38 H 1.09003 * 109.46767 * 60.00044 * 21 19 16 39 39 H 1.09007 * 109.46958 * 179.97438 * 21 19 16 40 40 H 1.08996 * 109.47096 * 299.99998 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7005 1.9479 -0.9042 5 6 3.5465 1.4427 0.0401 6 1 4.0648 1.9181 0.8597 7 6 4.2631 0.8361 -0.9696 8 7 3.6319 0.2569 -1.9675 9 14 6.1304 0.8369 -0.9204 10 1 6.5930 1.5493 0.2976 11 1 6.6255 -0.5628 -0.8938 12 1 6.6570 1.5255 -2.1261 13 7 1.5187 2.1461 1.1794 14 6 2.0510 1.5631 2.4182 15 6 1.8108 3.5840 1.1063 16 6 0.8555 4.2487 0.1130 17 6 -0.6239 4.2230 0.5023 18 6 1.1966 4.1417 -1.3746 19 6 1.3656 5.4763 -0.6442 20 1 0.6473 6.2660 -0.8647 21 6 2.7922 5.9451 -0.3506 22 1 -0.3632 -1.0245 0.0815 23 1 -0.3633 0.5828 0.8464 24 1 -0.3633 0.4416 -0.9279 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 4.1360 -0.1702 -2.6778 28 1 1.5535 2.0159 3.2759 29 1 1.8718 0.4880 2.4201 30 1 3.1227 1.7530 2.4779 31 1 2.8388 3.7296 0.7747 32 1 1.6799 4.0318 2.0914 33 1 -0.7667 4.7853 1.4251 34 1 -0.9423 3.1914 0.6523 35 1 -1.2168 4.6741 -0.2934 36 1 2.1017 3.5983 -1.6457 37 1 0.3669 4.0532 -2.0760 38 1 3.4938 5.1463 -0.5911 39 1 3.0186 6.8220 -0.9573 40 1 2.8805 6.2007 0.7053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704051147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:42 Heat of formation + Delta-G solvation = 14.096765 kcal Electronic energy + Delta-G solvation = -17099.288599 eV Core-core repulsion = 14721.475247 eV Total energy + Delta-G solvation = -2377.813352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.66178 -36.16842 -32.58655 -31.10331 -29.58104 -26.97539 -26.52044 -26.18579 -23.79207 -21.93652 -20.45622 -18.98484 -17.88281 -16.20819 -15.18687 -14.58641 -14.19715 -14.02904 -13.76420 -12.89055 -12.79395 -12.49714 -12.30104 -11.94824 -11.74243 -11.63555 -11.46253 -11.24499 -11.00465 -10.87085 -10.83849 -10.61442 -10.42484 -10.34045 -9.86822 -9.66140 -9.44978 -9.18826 -8.87468 -8.77303 -8.27557 -6.99746 -5.94616 -4.06859 3.25933 3.35095 3.37879 4.29494 4.41752 5.20445 5.25169 5.31369 5.41794 5.66036 5.76335 5.79436 6.10499 6.20841 6.23056 6.27131 6.37433 6.39670 6.43208 6.50991 6.51597 6.56630 6.62894 6.71712 6.76324 6.80307 6.85012 6.93894 7.04205 7.20080 7.29262 7.46054 7.70214 7.82545 8.08323 8.25279 8.41765 8.57179 9.04915 9.59849 11.04137 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.011764 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.200268 B = 2379.548024 C = 2972.746283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.206 3.794 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.535 5.535 14 C 0.035 3.965 15 C 0.095 3.905 16 C -0.102 4.102 17 C -0.102 4.102 18 C -0.162 4.162 19 C -0.163 4.163 20 H 0.092 0.908 21 C -0.120 4.120 22 H 0.022 0.978 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.087 0.913 26 H 0.031 0.969 27 H 0.259 0.741 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 6.423 3.505 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.099 3.901 4 H 0.072 0.928 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.114 4.114 15 C -0.034 4.034 16 C -0.103 4.103 17 C -0.159 4.159 18 C -0.198 4.198 19 C -0.182 4.182 20 H 0.110 0.890 21 C -0.177 4.177 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.136 6.255 3.348 8.759 hybrid contribution 2.029 -0.019 -0.107 2.032 sum -3.108 6.236 3.242 7.685 Atomic orbital electron populations 1.21720 0.98979 0.98217 1.00665 1.21595 0.92048 0.99523 1.01713 1.19457 0.91562 0.90616 0.88428 0.92799 1.21790 0.92855 1.35747 1.07401 0.92774 1.24875 0.97756 0.95261 0.95443 1.69891 1.34792 1.36788 1.10899 0.86712 0.86786 0.77701 0.77837 1.20052 1.21090 1.21096 1.62381 1.58421 1.01369 1.03616 1.22158 0.97477 0.99871 0.91849 1.21401 0.96527 0.89496 0.95960 1.21411 0.95757 0.99242 0.93857 1.21159 0.93009 1.02260 0.99487 1.23251 1.03738 0.98412 0.94440 1.22435 0.97797 0.91520 1.06414 0.89032 1.21323 0.94983 1.00787 1.00569 0.95929 0.92932 0.94474 0.89439 0.95074 0.93080 0.94524 0.92055 0.95709 0.93239 0.93304 0.93510 0.91176 0.94032 0.87270 0.90051 0.91784 0.93237 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.81 37.16 0.36 -2.46 16 2 C -0.11 -2.61 4.96 -26.73 -0.13 -2.75 16 3 C 0.21 4.91 1.65 -68.86 -0.11 4.79 16 4 H 0.05 1.39 4.92 -51.93 -0.26 1.14 16 5 C -0.54 -14.09 6.92 -34.44 -0.24 -14.33 16 6 H 0.05 1.45 6.00 -52.49 -0.31 1.13 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.56 11.33 55.43 0.63 -23.93 16 9 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.53 -11.11 3.58 -236.28 -0.85 -11.96 16 14 C 0.04 0.70 8.81 60.06 0.53 1.22 16 15 C 0.09 1.82 4.36 -3.82 -0.02 1.81 16 16 C -0.10 -1.78 2.15 -154.51 -0.33 -2.11 16 17 C -0.10 -1.59 9.64 37.16 0.36 -1.23 16 18 C -0.16 -2.97 8.04 -26.70 -0.21 -3.18 16 19 C -0.16 -2.59 6.13 -90.58 -0.56 -3.15 16 20 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 21 C -0.12 -1.83 8.92 37.16 0.33 -1.50 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 1.04 7.41 -51.93 -0.39 0.65 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.32 6.11 -51.93 -0.32 2.00 16 26 H 0.03 0.74 6.45 -51.93 -0.34 0.40 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.06 1.23 6.16 -51.93 -0.32 0.91 16 30 H 0.02 0.52 6.47 -51.93 -0.34 0.18 16 31 H 0.05 1.06 5.23 -51.93 -0.27 0.79 16 32 H 0.05 0.88 7.92 -51.93 -0.41 0.46 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.04 0.59 8.11 -51.92 -0.42 0.17 16 36 H 0.11 2.38 6.89 -51.93 -0.36 2.02 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.11 7.22 -51.93 -0.37 0.74 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -26.45 302.86 -7.83 -34.27 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.04 Total: 2.17 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.11 Total: -21.14 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.22 Total: -35.88 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.45 -7.83 -34.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704051147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.367 kcal (2) G-P(sol) polarization free energy of solvation -26.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds