Wall clock time and date at job start Mon Mar 30 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46820 * 2 1 4 4 H 1.09000 * 109.46841 * 298.38061 * 3 2 1 5 5 C 1.50701 * 109.46789 * 178.38399 * 3 2 1 6 6 H 1.08000 * 120.00104 * 239.99656 * 5 3 2 7 7 C 1.37874 * 120.00053 * 60.00140 * 5 3 2 8 8 N 1.31514 * 120.00116 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00203 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47439 * 119.99598 * 9 7 5 12 12 H 1.48498 * 109.47157 * 239.99778 * 9 7 5 13 13 N 1.46899 * 109.46851 * 58.38379 * 3 2 1 14 14 C 1.46898 * 110.99921 * 64.94000 * 13 3 2 15 15 C 1.46903 * 110.99366 * 188.88615 * 13 3 2 16 16 C 1.53004 * 109.47236 * 76.12975 * 15 13 3 17 17 C 1.53001 * 115.54573 * 64.58118 * 16 15 13 18 18 C 1.52995 * 117.49653 * 278.91447 * 16 15 13 19 19 C 1.52993 * 117.50014 * 210.25124 * 16 15 13 20 20 H 1.09004 * 117.49982 * 215.02465 * 19 16 15 21 21 C 1.53005 * 117.49898 * 0.02562 * 19 16 15 22 22 H 1.09004 * 109.46453 * 184.55009 * 1 2 3 23 23 H 1.08997 * 109.46927 * 304.54673 * 1 2 3 24 24 H 1.08997 * 109.47115 * 64.55147 * 1 2 3 25 25 H 1.08996 * 109.46828 * 239.99783 * 2 1 3 26 26 H 1.09001 * 109.46855 * 120.00108 * 2 1 3 27 27 H 0.97005 * 120.00463 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46784 * 187.20487 * 14 13 3 29 29 H 1.08997 * 109.47073 * 307.19690 * 14 13 3 30 30 H 1.08999 * 109.47495 * 67.20457 * 14 13 3 31 31 H 1.08995 * 109.47786 * 316.12915 * 15 13 3 32 32 H 1.08999 * 109.46978 * 196.12571 * 15 13 3 33 33 H 1.08999 * 109.47546 * 62.89899 * 17 16 15 34 34 H 1.09000 * 109.47198 * 302.88826 * 17 16 15 35 35 H 1.09007 * 109.46689 * 182.89537 * 17 16 15 36 36 H 1.08999 * 117.50405 * 359.97287 * 18 16 15 37 37 H 1.09005 * 117.49650 * 144.99851 * 18 16 15 38 38 H 1.09003 * 109.46767 * 60.00044 * 21 19 16 39 39 H 1.09007 * 109.46958 * 179.97438 * 21 19 16 40 40 H 1.08996 * 109.47096 * 299.99998 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7005 1.9479 -0.9042 5 6 3.5465 1.4427 0.0401 6 1 4.0648 1.9181 0.8597 7 6 4.2631 0.8361 -0.9696 8 7 3.6319 0.2569 -1.9675 9 14 6.1304 0.8369 -0.9204 10 1 6.5930 1.5493 0.2976 11 1 6.6255 -0.5628 -0.8938 12 1 6.6570 1.5255 -2.1261 13 7 1.5187 2.1461 1.1794 14 6 2.0510 1.5631 2.4182 15 6 1.8108 3.5840 1.1063 16 6 0.8555 4.2487 0.1130 17 6 -0.6239 4.2230 0.5023 18 6 1.1966 4.1417 -1.3746 19 6 1.3656 5.4763 -0.6442 20 1 0.6473 6.2660 -0.8647 21 6 2.7922 5.9451 -0.3506 22 1 -0.3632 -1.0245 0.0815 23 1 -0.3633 0.5828 0.8464 24 1 -0.3633 0.4416 -0.9279 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 4.1360 -0.1702 -2.6778 28 1 1.5535 2.0159 3.2759 29 1 1.8718 0.4880 2.4201 30 1 3.1227 1.7530 2.4779 31 1 2.8388 3.7296 0.7747 32 1 1.6799 4.0318 2.0914 33 1 -0.7667 4.7853 1.4251 34 1 -0.9423 3.1914 0.6523 35 1 -1.2168 4.6741 -0.2934 36 1 2.1017 3.5983 -1.6457 37 1 0.3669 4.0532 -2.0760 38 1 3.4938 5.1463 -0.5911 39 1 3.0186 6.8220 -0.9573 40 1 2.8805 6.2007 0.7053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704051147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:42 Heat of formation + Delta-G solvation = 0.743168 kcal Electronic energy + Delta-G solvation = -17099.867655 eV Core-core repulsion = 14721.475247 eV Total energy + Delta-G solvation = -2378.392407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16893 -37.82989 -34.52938 -32.94013 -30.86777 -28.78500 -28.07247 -27.61130 -25.65037 -23.67035 -21.84489 -20.81650 -19.40712 -18.15136 -16.94620 -16.25754 -15.77334 -15.59740 -15.47278 -14.73120 -14.26081 -13.97884 -13.72229 -13.54452 -13.29365 -13.14088 -13.01821 -12.84232 -12.68409 -12.62300 -12.51337 -12.27159 -12.14279 -11.90761 -11.65113 -11.51519 -11.21761 -10.92740 -10.55920 -10.21948 -10.19299 -8.80088 -7.97962 -6.18748 1.32660 1.36732 1.44775 2.40471 2.90169 3.19616 3.66876 3.92988 4.02285 4.22586 4.39972 4.52559 4.59369 4.71656 4.80002 4.83841 4.86362 4.94801 4.97728 4.98951 5.07272 5.14487 5.16406 5.16767 5.19803 5.30101 5.36714 5.46639 5.48657 5.56212 5.57550 5.67318 5.71834 5.90822 6.15236 6.30306 6.47478 6.79828 7.05298 7.50766 8.95800 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.011764 C = 0.009417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.200268 B = 2379.548024 C = 2972.746283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.542 4.542 6 H 0.044 0.956 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.935 3.065 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.529 5.529 14 C 0.038 3.962 15 C 0.095 3.905 16 C -0.107 4.107 17 C -0.095 4.095 18 C -0.179 4.179 19 C -0.138 4.138 20 H 0.121 0.879 21 C -0.119 4.119 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.024 0.976 27 H 0.258 0.742 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.006 0.994 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 7.820 4.583 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.581 4.581 6 H 0.062 0.938 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.762 3.238 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.252 5.252 14 C -0.111 4.111 15 C -0.033 4.033 16 C -0.108 4.108 17 C -0.152 4.152 18 C -0.217 4.217 19 C -0.157 4.157 20 H 0.139 0.861 21 C -0.176 4.176 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.124 7.657 4.438 10.762 hybrid contribution 2.353 -0.430 -0.419 2.428 sum -3.771 7.227 4.019 9.089 Atomic orbital electron populations 1.21564 0.96241 0.99585 1.00801 1.21462 0.94445 0.98879 0.99799 1.19213 0.90230 0.90860 0.89015 0.94899 1.22009 0.94387 1.34920 1.06779 0.93815 1.25493 1.01290 0.95374 0.95410 1.70008 1.35934 1.37605 1.11398 0.85863 0.82648 0.77576 0.77676 1.19902 1.20841 1.20931 1.62366 1.57816 1.02130 1.02879 1.22182 0.96681 0.99823 0.92408 1.21426 0.95703 0.88710 0.97458 1.21489 0.96784 1.00085 0.92409 1.21115 0.91318 1.01857 1.00948 1.23048 1.02295 1.00651 0.95661 1.22560 0.98556 0.91004 1.03582 0.86129 1.21327 0.93962 1.00539 1.01781 0.94058 0.91989 0.94886 0.92555 0.95682 0.93217 0.91340 0.92660 0.97505 0.95923 0.91377 0.91646 0.92627 0.92440 0.91658 0.89308 0.94940 0.90940 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.81 71.99 0.71 -4.27 16 2 C -0.11 -5.15 4.96 30.60 0.15 -4.99 16 3 C 0.21 10.41 1.65 44.17 0.07 10.48 16 4 H 0.03 1.77 4.92 -2.39 -0.01 1.76 16 5 C -0.54 -29.09 6.92 25.60 0.18 -28.91 16 6 H 0.04 2.40 6.00 -2.91 -0.02 2.38 16 7 C 0.02 1.31 5.30 84.65 0.45 1.76 16 8 N -0.91 -52.01 11.33 21.45 0.24 -51.77 16 9 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.53 -21.70 3.58 -901.47 -3.23 -24.93 16 14 C 0.04 1.45 8.81 127.69 1.12 2.57 16 15 C 0.10 3.59 4.36 86.30 0.38 3.97 16 16 C -0.11 -3.58 2.15 -52.18 -0.11 -3.69 16 17 C -0.10 -2.70 9.64 71.98 0.69 -2.00 16 18 C -0.18 -6.60 8.04 30.62 0.25 -6.36 16 19 C -0.14 -4.12 6.13 -10.77 -0.07 -4.19 16 20 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 21 C -0.12 -3.47 8.92 71.98 0.64 -2.83 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 2.35 7.41 -2.39 -0.02 2.33 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 3.06 6.11 -2.39 -0.01 3.05 16 26 H 0.02 1.19 6.45 -2.39 -0.02 1.18 16 27 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 28 H 0.07 2.19 8.13 -2.39 -0.02 2.18 16 29 H 0.05 2.18 6.16 -2.39 -0.01 2.16 16 30 H 0.01 0.27 6.47 -2.39 -0.02 0.25 16 31 H 0.02 0.98 5.23 -2.39 -0.01 0.96 16 32 H 0.07 2.29 7.92 -2.39 -0.02 2.27 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 35 H 0.06 1.44 8.11 -2.38 -0.02 1.42 16 36 H 0.06 3.00 6.89 -2.39 -0.02 2.98 16 37 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.03 1.14 7.22 -2.39 -0.02 1.12 16 39 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -57.57 302.86 4.49 -53.08 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.98 Total: 15.98 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 4.46 Total: -38.46 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.99 Total: -76.70 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -57.57 4.49 -53.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704051147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.824 kcal (2) G-P(sol) polarization free energy of solvation -57.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds