Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47730 * 239.99265 * 2 1 3 5 5 C 1.50700 * 109.46637 * 65.24233 * 4 2 1 6 6 H 1.07997 * 120.00483 * 356.13043 * 5 4 2 7 7 C 1.37879 * 119.99783 * 176.13450 * 5 4 2 8 8 N 1.31517 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47208 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47211 * 299.99298 * 9 7 5 12 12 H 1.48501 * 109.47267 * 59.99750 * 9 7 5 13 13 N 1.46908 * 109.46898 * 119.99248 * 2 1 3 14 14 C 1.46906 * 110.99898 * 171.92156 * 13 2 1 15 15 C 1.46904 * 111.00086 * 295.87653 * 13 2 1 16 16 C 1.52995 * 109.47064 * 170.00341 * 15 13 2 17 17 C 1.53004 * 115.54823 * 325.66834 * 16 15 13 18 18 C 1.52993 * 117.50273 * 111.37731 * 16 15 13 19 19 C 1.53002 * 60.00245 * 107.48900 * 18 16 15 20 20 H 1.08995 * 117.51712 * 107.48255 * 19 18 16 21 21 C 1.53002 * 117.49718 * 252.51452 * 19 18 16 22 22 H 1.09003 * 109.46485 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47422 * 300.00511 * 1 2 3 24 24 H 1.08999 * 109.46721 * 60.00573 * 1 2 3 25 25 H 1.09000 * 109.46972 * 305.25079 * 4 2 1 26 26 H 1.08992 * 109.47461 * 185.24177 * 4 2 1 27 27 H 0.96995 * 120.00143 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47057 * 53.30402 * 14 13 2 29 29 H 1.08999 * 109.46903 * 173.30132 * 14 13 2 30 30 H 1.09000 * 109.47106 * 293.30829 * 14 13 2 31 31 H 1.09001 * 109.46885 * 289.99804 * 15 13 2 32 32 H 1.08995 * 109.47002 * 49.99799 * 15 13 2 33 33 H 1.08994 * 109.47325 * 34.41564 * 17 16 15 34 34 H 1.08994 * 109.47211 * 154.42534 * 17 16 15 35 35 H 1.09010 * 109.46826 * 274.41791 * 17 16 15 36 36 H 1.09000 * 117.50363 * 214.98021 * 18 16 15 37 37 H 1.09002 * 117.49975 * 359.97438 * 18 16 15 38 38 H 1.08997 * 109.47039 * 128.62049 * 21 19 18 39 39 H 1.08995 * 109.46607 * 248.61881 * 21 19 18 40 40 H 1.08997 * 109.47177 * 8.61597 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2491 5 6 1.6466 0.0599 -2.4762 6 1 1.0355 0.9451 -2.3798 7 6 2.0668 -0.3554 -3.7220 8 7 2.8115 -1.4331 -3.8393 9 14 1.5797 0.6135 -5.2429 10 1 2.1546 -0.0356 -6.4485 11 1 0.0993 0.6458 -5.3561 12 1 2.0982 2.0007 -5.1334 13 7 2.0197 -0.6924 1.1996 14 6 3.4754 -0.8812 1.1412 15 6 1.6308 0.0285 2.4191 16 6 1.9349 -0.8382 3.6427 17 6 1.7538 -2.3447 3.4457 18 6 3.0580 -0.3770 4.5737 19 6 1.5989 -0.2603 5.0190 20 1 1.2489 -0.9532 5.7840 21 6 0.9846 1.1402 5.0662 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.6021 -1.7183 -1.2972 26 1 3.1260 -0.8034 -1.2033 27 1 3.1074 -1.7250 -4.7157 28 1 3.9589 0.0777 0.9546 29 1 3.8274 -1.2872 2.0895 30 1 3.7198 -1.5741 0.3360 31 1 2.1927 0.9602 2.4852 32 1 0.5639 0.2491 2.3862 33 1 2.0299 -2.6136 2.4262 34 1 2.3905 -2.8821 4.1484 35 1 0.7118 -2.6115 3.6223 36 1 3.6683 -1.1468 5.0460 37 1 3.5806 0.5437 4.3142 38 1 0.0442 1.1432 4.5151 39 1 0.7991 1.4207 6.1029 40 1 1.6729 1.8543 4.6142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704054578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = 12.531269 kcal Electronic energy + Delta-G solvation = -16266.550586 eV Core-core repulsion = 13888.669348 eV Total energy + Delta-G solvation = -2377.881237 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.14386 -36.71454 -33.02732 -31.01457 -29.56067 -28.07166 -26.86753 -26.12105 -23.90777 -22.63571 -21.04382 -18.94533 -18.22042 -16.55293 -15.28543 -15.00921 -14.67091 -14.41377 -13.83447 -13.39815 -13.11582 -12.96474 -12.77403 -12.16272 -12.01165 -11.78708 -11.73026 -11.49941 -11.31462 -11.26923 -10.94034 -10.81312 -10.74737 -10.58553 -10.32517 -9.86955 -9.68384 -9.36788 -9.07082 -8.99923 -8.30521 -7.59494 -5.97034 -3.98390 3.34536 3.39101 3.41243 3.79259 4.41703 4.57152 4.75692 4.90842 5.08479 5.31056 5.35524 5.38791 5.69215 5.74975 5.80755 5.85768 5.87005 5.92480 6.00868 6.02163 6.13804 6.14246 6.29002 6.32139 6.33720 6.39100 6.43054 6.61347 6.73734 6.76169 6.97826 7.14583 7.61652 7.69643 7.87262 7.91674 8.11696 8.47936 9.07737 9.64555 11.14400 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048805 B = 0.005741 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.579087 B = 4876.368617 C = 5119.426447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.085 3.915 3 H 0.025 0.975 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.027 3.973 15 C 0.089 3.911 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.178 4.178 19 C -0.154 4.154 20 H 0.099 0.901 21 C -0.121 4.121 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 1.929 15.494 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.043 0.957 4 C -0.008 4.008 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.204 1.204 13 N -0.257 5.257 14 C -0.121 4.121 15 C -0.039 4.039 16 C -0.106 4.106 17 C -0.168 4.168 18 C -0.215 4.215 19 C -0.173 4.173 20 H 0.118 0.882 21 C -0.178 4.178 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.698 1.357 15.356 15.509 hybrid contribution 0.242 1.349 -0.861 1.619 sum -1.456 2.707 14.495 14.817 Atomic orbital electron populations 1.21754 0.95539 1.01525 0.99862 1.21844 0.94873 0.95267 0.90265 0.95684 1.19206 0.96599 0.95738 0.89210 1.21182 1.32028 1.10932 0.91430 0.92770 1.24981 0.95226 0.95124 0.98969 1.69956 1.35982 1.23659 1.23789 0.86694 0.78819 0.80140 0.82542 1.21329 1.20254 1.20383 1.62073 1.12467 1.49479 1.01716 1.22375 0.87851 1.00181 1.01687 1.21593 1.00591 0.93100 0.88629 1.21586 1.02092 0.96627 0.90331 1.21296 1.00669 0.91314 1.03523 1.23294 0.91056 1.02841 1.04309 1.22424 0.98100 0.98451 0.98312 0.88242 1.21320 1.00704 0.94481 1.01314 0.92693 0.95052 0.91745 0.96064 0.95883 0.93013 0.96469 0.92390 0.90535 0.95649 0.90516 0.89455 0.93896 0.92980 0.89254 0.89312 0.92190 0.92645 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.91 37.16 0.33 -2.18 16 2 C 0.08 1.79 2.08 -67.71 -0.14 1.65 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.03 0.77 4.13 -27.88 -0.12 0.65 16 5 C -0.52 -14.48 8.48 -34.44 -0.29 -14.78 16 6 H 0.05 1.48 6.93 -52.49 -0.36 1.11 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.53 -9.75 3.39 -234.88 -0.80 -10.55 16 14 C 0.03 0.49 8.02 60.07 0.48 0.97 16 15 C 0.09 1.38 3.98 -3.82 -0.02 1.36 16 16 C -0.11 -1.40 1.52 -154.51 -0.23 -1.64 16 17 C -0.11 -1.48 9.32 37.16 0.35 -1.14 16 18 C -0.18 -2.10 9.13 -26.73 -0.24 -2.35 16 19 C -0.15 -1.75 6.13 -90.62 -0.56 -2.30 16 20 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 21 C -0.12 -1.26 9.21 37.16 0.34 -0.91 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.03 0.52 6.30 -51.93 -0.33 0.19 16 24 H 0.06 1.31 6.89 -51.93 -0.36 0.95 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.63 6.15 -51.93 -0.32 0.31 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.06 0.90 6.28 -51.93 -0.33 0.57 16 30 H 0.08 1.51 6.51 -51.93 -0.34 1.17 16 31 H 0.03 0.40 7.75 -51.93 -0.40 0.00 16 32 H 0.08 1.19 5.87 -51.93 -0.30 0.88 16 33 H 0.09 1.35 6.14 -51.93 -0.32 1.03 16 34 H 0.04 0.51 7.90 -51.93 -0.41 0.10 16 35 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.09 1.06 7.96 -51.93 -0.41 0.65 16 38 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.59 7.77 -51.93 -0.40 0.18 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -28.87 307.70 -7.85 -36.72 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.21 Total: -2.26 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -0.19 Total: -19.10 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.06 Total: -36.65 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.87 -7.85 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704054578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.248 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds