Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47730 * 239.99265 * 2 1 3 5 5 C 1.50700 * 109.46637 * 65.24233 * 4 2 1 6 6 H 1.07997 * 120.00483 * 356.13043 * 5 4 2 7 7 C 1.37879 * 119.99783 * 176.13450 * 5 4 2 8 8 N 1.31517 * 120.00209 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99881 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47208 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47211 * 299.99298 * 9 7 5 12 12 H 1.48501 * 109.47267 * 59.99750 * 9 7 5 13 13 N 1.46908 * 109.46898 * 119.99248 * 2 1 3 14 14 C 1.46906 * 110.99898 * 171.92156 * 13 2 1 15 15 C 1.46904 * 111.00086 * 295.87653 * 13 2 1 16 16 C 1.52995 * 109.47064 * 170.00341 * 15 13 2 17 17 C 1.53004 * 115.54823 * 325.66834 * 16 15 13 18 18 C 1.52993 * 117.50273 * 111.37731 * 16 15 13 19 19 C 1.53002 * 60.00245 * 107.48900 * 18 16 15 20 20 H 1.08995 * 117.51712 * 107.48255 * 19 18 16 21 21 C 1.53002 * 117.49718 * 252.51452 * 19 18 16 22 22 H 1.09003 * 109.46485 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47422 * 300.00511 * 1 2 3 24 24 H 1.08999 * 109.46721 * 60.00573 * 1 2 3 25 25 H 1.09000 * 109.46972 * 305.25079 * 4 2 1 26 26 H 1.08992 * 109.47461 * 185.24177 * 4 2 1 27 27 H 0.96995 * 120.00143 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47057 * 53.30402 * 14 13 2 29 29 H 1.08999 * 109.46903 * 173.30132 * 14 13 2 30 30 H 1.09000 * 109.47106 * 293.30829 * 14 13 2 31 31 H 1.09001 * 109.46885 * 289.99804 * 15 13 2 32 32 H 1.08995 * 109.47002 * 49.99799 * 15 13 2 33 33 H 1.08994 * 109.47325 * 34.41564 * 17 16 15 34 34 H 1.08994 * 109.47211 * 154.42534 * 17 16 15 35 35 H 1.09010 * 109.46826 * 274.41791 * 17 16 15 36 36 H 1.09000 * 117.50363 * 214.98021 * 18 16 15 37 37 H 1.09002 * 117.49975 * 359.97438 * 18 16 15 38 38 H 1.08997 * 109.47039 * 128.62049 * 21 19 18 39 39 H 1.08995 * 109.46607 * 248.61881 * 21 19 18 40 40 H 1.08997 * 109.47177 * 8.61597 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2491 5 6 1.6466 0.0599 -2.4762 6 1 1.0355 0.9451 -2.3798 7 6 2.0668 -0.3554 -3.7220 8 7 2.8115 -1.4331 -3.8393 9 14 1.5797 0.6135 -5.2429 10 1 2.1546 -0.0356 -6.4485 11 1 0.0993 0.6458 -5.3561 12 1 2.0982 2.0007 -5.1334 13 7 2.0197 -0.6924 1.1996 14 6 3.4754 -0.8812 1.1412 15 6 1.6308 0.0285 2.4191 16 6 1.9349 -0.8382 3.6427 17 6 1.7538 -2.3447 3.4457 18 6 3.0580 -0.3770 4.5737 19 6 1.5989 -0.2603 5.0190 20 1 1.2489 -0.9532 5.7840 21 6 0.9846 1.1402 5.0662 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.6021 -1.7183 -1.2972 26 1 3.1260 -0.8034 -1.2033 27 1 3.1074 -1.7250 -4.7157 28 1 3.9589 0.0777 0.9546 29 1 3.8274 -1.2872 2.0895 30 1 3.7198 -1.5741 0.3360 31 1 2.1927 0.9602 2.4852 32 1 0.5639 0.2491 2.3862 33 1 2.0299 -2.6136 2.4262 34 1 2.3905 -2.8821 4.1484 35 1 0.7118 -2.6115 3.6223 36 1 3.6683 -1.1468 5.0460 37 1 3.5806 0.5437 4.3142 38 1 0.0442 1.1432 4.5151 39 1 0.7991 1.4207 6.1029 40 1 1.6729 1.8543 4.6142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704054578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = -3.003516 kcal Electronic energy + Delta-G solvation = -16267.224224 eV Core-core repulsion = 13888.669348 eV Total energy + Delta-G solvation = -2378.554876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32354 -38.15055 -35.05749 -32.72040 -30.61137 -29.72087 -27.97056 -27.66441 -25.59329 -24.42759 -21.95114 -20.67567 -19.32382 -18.63381 -16.62129 -16.55447 -16.27723 -15.91640 -15.16325 -14.95570 -14.36402 -14.23615 -13.97493 -13.80118 -13.40635 -13.10105 -13.07896 -12.94127 -12.81763 -12.66664 -12.56735 -12.39476 -12.14068 -12.10853 -11.93543 -11.66082 -11.22723 -11.03199 -10.59696 -10.50631 -10.24485 -9.10904 -8.16987 -6.26540 1.40448 1.43164 1.50834 2.41563 2.81109 3.14535 3.16909 3.81179 3.94014 4.00116 4.21156 4.30880 4.36456 4.48767 4.49963 4.60671 4.69155 4.76211 4.86392 4.92407 4.96680 4.98398 5.05624 5.09575 5.13303 5.16393 5.21465 5.24522 5.33138 5.42316 5.48902 5.51703 5.62629 5.74467 5.81641 6.14049 6.38601 6.41798 6.89428 7.41469 8.94961 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048805 B = 0.005741 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.579087 B = 4876.368617 C = 5119.426447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.094 3.906 3 H 0.016 0.984 4 C 0.039 3.961 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.961 3.039 10 H -0.284 1.284 11 H -0.266 1.266 12 H -0.269 1.269 13 N -0.536 5.536 14 C 0.036 3.964 15 C 0.093 3.907 16 C -0.125 4.125 17 C -0.106 4.106 18 C -0.174 4.174 19 C -0.138 4.138 20 H 0.113 0.887 21 C -0.123 4.123 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.052 0.948 25 H -0.010 1.010 26 H -0.002 1.002 27 H 0.262 0.738 28 H 0.010 0.990 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 3.020 16.891 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.014 4.014 3 H 0.034 0.966 4 C 0.002 3.998 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.210 1.210 11 H -0.191 1.191 12 H -0.194 1.194 13 N -0.260 5.260 14 C -0.112 4.112 15 C -0.034 4.034 16 C -0.126 4.126 17 C -0.164 4.164 18 C -0.211 4.211 19 C -0.156 4.156 20 H 0.131 0.869 21 C -0.180 4.180 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.493 2.457 16.774 17.136 hybrid contribution 0.513 0.981 -1.234 1.658 sum -1.980 3.439 15.540 16.038 Atomic orbital electron populations 1.21648 0.93936 1.01392 1.00843 1.21571 0.96081 0.94058 0.89706 0.96590 1.19020 0.94855 0.94484 0.91435 1.21582 1.31989 1.11232 0.92453 0.92158 1.25911 0.95081 0.96108 1.02496 1.70100 1.37165 1.25378 1.24653 0.85560 0.78899 0.78756 0.78184 1.20980 1.19133 1.19375 1.62027 1.12550 1.49624 1.01831 1.22263 0.87804 0.99195 1.01947 1.21605 1.00539 0.93244 0.88022 1.21484 1.04557 0.96131 0.90387 1.21218 1.01149 0.91703 1.02285 1.23354 0.91395 1.02966 1.03363 1.22525 0.97546 0.98946 0.96618 0.86856 1.21358 1.00380 0.93761 1.02484 0.93343 0.91892 0.92878 0.99209 0.98360 0.92914 0.97139 0.89840 0.93323 0.95735 0.90347 0.92107 0.92303 0.92753 0.88095 0.89495 0.92318 0.90842 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 8.91 71.98 0.64 -3.99 16 2 C 0.09 4.02 2.08 44.91 0.09 4.11 16 3 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 4 C 0.04 2.12 4.13 29.85 0.12 2.24 16 5 C -0.53 -30.47 8.48 25.60 0.22 -30.25 16 6 H 0.06 3.29 6.93 -2.91 -0.02 3.27 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 N -0.54 -19.69 3.39 -897.02 -3.04 -22.73 16 14 C 0.04 1.31 8.02 127.69 1.02 2.34 16 15 C 0.09 2.77 3.98 86.30 0.34 3.11 16 16 C -0.13 -3.06 1.52 -52.18 -0.08 -3.14 16 17 C -0.11 -2.68 9.32 71.98 0.67 -2.01 16 18 C -0.17 -3.64 9.13 30.59 0.28 -3.36 16 19 C -0.14 -2.70 6.13 -10.79 -0.07 -2.76 16 20 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.12 -2.19 9.21 71.98 0.66 -1.52 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 2.00 6.30 -2.39 -0.02 1.98 16 24 H 0.05 2.13 6.89 -2.39 -0.02 2.12 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.00 -0.11 6.15 -2.39 -0.01 -0.12 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 29 H 0.08 2.56 6.28 -2.39 -0.01 2.55 16 30 H 0.05 2.02 6.51 -2.39 -0.02 2.00 16 31 H 0.02 0.74 7.75 -2.39 -0.02 0.72 16 32 H 0.08 2.28 5.87 -2.39 -0.01 2.26 16 33 H 0.06 1.86 6.14 -2.39 -0.01 1.84 16 34 H 0.06 1.27 7.90 -2.39 -0.02 1.25 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.10 1.89 8.05 -2.39 -0.02 1.87 16 37 H 0.09 1.87 7.96 -2.39 -0.02 1.85 16 38 H 0.06 1.07 8.02 -2.39 -0.02 1.05 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 0.94 7.77 -2.39 -0.02 0.92 16 Total: -1.00 -62.58 307.70 4.62 -57.95 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.98 Total: 9.89 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.37 Total: -34.68 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.75 Total: -79.79 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.58 4.62 -57.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704054578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.951 kcal (2) G-P(sol) polarization free energy of solvation -62.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds