Wall clock time and date at job start Mon Mar 30 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 115.56207 * 2 1 4 4 C 1.53073 * 117.51167 * 145.70585 * 2 1 3 5 5 C 1.52998 * 59.98411 * 107.47854 * 4 2 1 6 6 C 1.53004 * 117.50299 * 107.50106 * 5 4 2 7 7 C 1.53006 * 117.49473 * 252.50060 * 5 4 2 8 8 N 1.46902 * 109.46626 * 248.74400 * 7 5 4 9 9 C 1.46905 * 110.99800 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46860 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46860 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47237 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00143 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99994 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47293 * 60.00476 * 17 15 13 19 19 H 1.48503 * 109.47246 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47101 * 300.00211 * 17 15 13 21 21 H 1.08996 * 109.47445 * 205.68709 * 1 2 3 22 22 H 1.09002 * 109.46949 * 325.68875 * 1 2 3 23 23 H 1.08998 * 109.47368 * 85.68678 * 1 2 3 24 24 H 1.08992 * 117.51419 * 359.97438 * 4 2 1 25 25 H 1.09001 * 117.49003 * 214.96323 * 4 2 1 26 26 H 1.08997 * 109.46759 * 231.25216 * 6 5 4 27 27 H 1.08993 * 109.46954 * 351.25366 * 6 5 4 28 28 H 1.08995 * 109.47058 * 111.25207 * 6 5 4 29 29 H 1.08993 * 109.46955 * 8.74747 * 7 5 4 30 30 H 1.09000 * 109.47050 * 128.74575 * 7 5 4 31 31 H 1.00904 * 111.00423 * 303.95194 * 8 7 5 32 32 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 33 33 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 34 34 H 1.08997 * 109.46649 * 299.99858 * 10 9 8 35 35 H 1.09001 * 109.47170 * 60.00230 * 10 9 8 36 36 H 1.08994 * 109.47497 * 300.00218 * 11 10 9 37 37 H 1.09004 * 109.47471 * 60.00183 * 11 10 9 38 38 H 1.09002 * 109.47089 * 300.00090 * 12 11 10 39 39 H 1.08993 * 109.47319 * 60.00035 * 12 11 10 40 40 H 0.97002 * 119.99905 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2371 -1.1216 0.7649 5 6 2.2365 -1.1209 -0.7650 6 6 3.5487 -0.7757 -1.4720 7 6 1.3587 -2.1561 -1.4715 8 7 2.2124 -3.1448 -2.1437 9 6 1.4021 -4.1566 -2.8349 10 6 2.3241 -5.1668 -3.5209 11 6 1.4801 -6.2209 -4.2402 12 6 2.4021 -7.2306 -4.9267 13 6 1.5709 -8.2687 -5.6358 14 1 0.4928 -8.2134 -5.6007 15 6 2.1866 -9.2883 -6.3302 16 7 3.4993 -9.3553 -6.3734 17 14 1.1563 -10.5744 -7.2097 18 1 0.3014 -9.9125 -8.2276 19 1 2.0511 -11.5546 -7.8759 20 1 0.2973 -11.2791 -6.2243 21 1 -0.3634 -0.9260 0.4454 22 1 -0.3633 0.8489 0.5793 23 1 -0.3634 0.0773 -1.0247 24 1 1.6123 -1.8592 1.2685 25 1 3.1723 -0.8757 1.2679 26 1 3.3691 0.0062 -2.2098 27 1 4.2746 -0.4238 -0.7390 28 1 3.9372 -1.6636 -1.9707 29 1 0.7284 -2.6590 -0.7382 30 1 0.7305 -1.6570 -2.2093 31 1 2.8517 -2.6959 -2.7825 32 1 0.7717 -4.6735 -2.1114 33 1 0.7746 -3.6710 -3.5822 34 1 2.9547 -4.6501 -4.2443 35 1 2.9513 -5.6523 -2.7733 36 1 0.8497 -6.7374 -3.5165 37 1 0.8525 -5.7357 -4.9878 38 1 3.0322 -6.7138 -5.6505 39 1 3.0300 -7.7159 -4.1795 40 1 3.9325 -10.0728 -6.8616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704271666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:56 Heat of formation + Delta-G solvation = -25.744770 kcal Electronic energy + Delta-G solvation = -15051.762839 eV Core-core repulsion = 12672.221828 eV Total energy + Delta-G solvation = -2379.541011 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91509 -37.50707 -35.69498 -33.92420 -31.12856 -29.99813 -27.89078 -27.17811 -25.20947 -22.86181 -21.95895 -21.77497 -19.43883 -18.41338 -17.10766 -16.55283 -16.34165 -16.09919 -15.60422 -14.87196 -14.52774 -14.25566 -14.10508 -13.82585 -13.62862 -13.35028 -13.08398 -13.02055 -12.81446 -12.72324 -12.38063 -12.27141 -12.18286 -12.08316 -11.83143 -11.38413 -11.31534 -11.04334 -10.68787 -10.54908 -10.38482 -9.32900 -8.19707 -6.31509 1.39501 1.43152 1.51109 2.41110 2.76683 3.12803 3.25145 3.74968 3.86203 3.99379 4.13391 4.17072 4.24370 4.45190 4.53205 4.59872 4.61973 4.70759 4.83126 4.88388 4.93326 4.94060 4.97629 5.02474 5.04529 5.16264 5.23826 5.24533 5.27902 5.35395 5.41819 5.48702 5.54813 5.77918 5.86808 6.09887 6.25815 6.45418 6.85930 7.37809 8.92070 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.066738 B = 0.003458 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.452010 B = 8095.202595 C = 8352.133747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 H 0.111 0.889 4 C -0.169 4.169 5 C -0.131 4.131 6 C -0.119 4.119 7 C 0.100 3.900 8 N -0.695 5.695 9 C 0.070 3.930 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.023 3.977 13 C -0.547 4.547 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.344 0.656 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.050 0.950 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 19.321 11.922 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.129 0.871 4 C -0.206 4.206 5 C -0.131 4.131 6 C -0.176 4.176 7 C -0.029 4.029 8 N -0.329 5.329 9 C -0.059 4.059 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.165 0.835 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.349 18.842 12.418 22.981 hybrid contribution -0.371 -0.453 -1.273 1.402 sum -4.721 18.389 11.144 22.015 Atomic orbital electron populations 1.21363 0.92479 1.02277 1.01945 1.22563 0.95647 0.94334 1.03681 0.87103 1.23306 1.02662 1.01294 0.93331 1.21547 0.98379 0.99244 0.93964 1.21344 0.94391 1.01491 1.00358 1.21375 0.93559 0.90994 0.96947 1.60565 1.20290 1.16489 1.35509 1.21851 0.94929 0.92948 0.96187 1.21457 0.98081 0.96140 0.98621 1.21401 0.97933 0.95912 0.98285 1.19017 0.94667 0.93606 0.94113 1.21732 0.93676 1.10958 1.32139 0.92165 1.26034 0.96199 1.00441 0.97381 1.70102 1.10028 1.33912 1.43462 0.85476 0.78393 0.78255 0.78780 1.19061 1.20750 1.19118 0.92784 0.91113 0.92340 0.89198 0.88468 0.91977 0.91855 0.91718 0.91373 0.94894 0.83510 0.91272 0.94954 0.92811 0.92681 0.93104 0.93086 0.99188 0.99290 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.21 71.98 0.66 -1.04 16 2 C -0.14 -2.20 6.13 -10.77 -0.07 -2.26 16 3 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 4 C -0.17 -2.88 9.47 30.62 0.29 -2.59 16 5 C -0.13 -2.41 2.57 -52.18 -0.13 -2.54 16 6 C -0.12 -2.05 9.53 71.98 0.69 -1.36 16 7 C 0.10 2.12 4.89 86.31 0.42 2.54 16 8 N -0.70 -17.41 6.12 -513.86 -3.14 -20.56 16 9 C 0.07 1.97 5.68 86.30 0.49 2.46 16 10 C -0.10 -3.67 5.47 30.59 0.17 -3.50 16 11 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 12 C 0.02 1.26 4.97 29.85 0.15 1.41 16 13 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 17 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H 0.05 0.78 7.77 -2.39 -0.02 0.76 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.82 8.02 -2.39 -0.02 0.80 16 24 H 0.09 1.59 7.96 -2.39 -0.02 1.57 16 25 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.99 7.90 -2.39 -0.02 0.97 16 28 H 0.06 1.24 5.84 -2.39 -0.01 1.23 16 29 H 0.07 1.48 7.77 -2.39 -0.02 1.46 16 30 H 0.03 0.68 8.02 -2.39 -0.02 0.66 16 31 H 0.34 8.12 6.54 -89.69 -0.59 7.54 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -64.32 321.41 3.07 -61.25 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.38 Total: 12.77 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.52 Total: -42.45 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -2.86 Total: -78.61 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.32 3.07 -61.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704271666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.505 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds