Wall clock time and date at job start Mon Mar 30 2020 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 115.55975 * 2 1 4 4 C 1.53069 * 117.51680 * 214.29142 * 2 1 3 5 5 C 1.53004 * 59.98816 * 252.52410 * 4 2 1 6 6 C 1.52996 * 117.49629 * 252.49673 * 5 4 2 7 7 C 1.52997 * 117.49920 * 107.49761 * 5 4 2 8 8 N 1.46907 * 109.46765 * 111.25455 * 7 5 4 9 9 C 1.46902 * 110.99665 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46901 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 H 1.09006 * 109.46994 * 274.31067 * 1 2 3 22 22 H 1.08995 * 109.47436 * 34.31228 * 1 2 3 23 23 H 1.09007 * 109.46988 * 154.31835 * 1 2 3 24 24 H 1.09002 * 117.49654 * 145.03540 * 4 2 1 25 25 H 1.09002 * 117.53069 * 359.97438 * 4 2 1 26 26 H 1.08998 * 109.47393 * 248.74065 * 6 5 4 27 27 H 1.09001 * 109.47038 * 8.75152 * 6 5 4 28 28 H 1.09006 * 109.46725 * 128.74591 * 6 5 4 29 29 H 1.08995 * 109.47319 * 351.25725 * 7 5 4 30 30 H 1.08993 * 109.46983 * 231.25355 * 7 5 4 31 31 H 1.00898 * 110.99982 * 303.95153 * 8 7 5 32 32 H 1.09001 * 109.46712 * 60.00151 * 9 8 7 33 33 H 1.09002 * 109.47411 * 300.00262 * 9 8 7 34 34 H 1.09001 * 109.46652 * 60.00371 * 10 9 8 35 35 H 1.08992 * 109.47514 * 300.00460 * 10 9 8 36 36 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 37 37 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 40 40 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7648 5 6 2.2364 -1.1209 0.7652 6 6 3.5487 -0.7757 1.4720 7 6 1.3588 -2.1561 1.4717 8 7 2.2125 -3.1447 2.1439 9 6 1.4022 -4.1565 2.8351 10 6 2.3242 -5.1667 3.5211 11 6 1.4803 -6.2208 4.2404 12 6 2.4022 -7.2306 4.9269 13 6 1.5711 -8.2693 5.6350 14 1 0.4930 -8.2149 5.5986 15 6 2.1868 -9.2896 6.3283 16 7 3.4996 -9.3561 6.3722 17 14 1.1566 -10.5767 7.2066 18 1 -0.2843 -10.2787 7.0058 19 1 1.4655 -11.9198 6.6535 20 1 1.4694 -10.5552 8.6580 21 1 -0.3633 0.0772 1.0248 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9262 -0.4454 24 1 3.1724 -0.8757 -1.2678 25 1 1.6127 -1.8599 -1.2678 26 1 3.9372 -1.6636 1.9709 27 1 4.2745 -0.4237 0.7390 28 1 3.3691 0.0062 2.2099 29 1 0.7284 -2.6591 0.7384 30 1 0.7306 -1.6569 2.2094 31 1 2.8498 -3.5756 1.4910 32 1 0.7718 -4.6734 2.1115 33 1 0.7746 -3.6710 3.5824 34 1 2.9549 -4.6499 4.2445 35 1 2.9515 -5.6521 2.7736 36 1 0.8526 -5.7356 4.9879 37 1 0.8499 -6.7374 3.5166 38 1 3.0301 -7.7158 4.1797 39 1 3.0323 -6.7138 5.6507 40 1 3.9328 -10.0741 6.8597 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704271667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:59 Heat of formation + Delta-G solvation = -11.335187 kcal Electronic energy + Delta-G solvation = -15048.775830 eV Core-core repulsion = 12669.859666 eV Total energy + Delta-G solvation = -2378.916164 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12062 -36.20881 -33.91702 -32.05922 -30.16166 -28.50981 -27.11950 -25.67391 -23.64010 -21.43642 -21.20822 -20.03685 -18.66667 -16.21962 -15.94425 -15.38126 -15.03550 -14.42142 -14.26886 -14.11496 -13.27661 -13.10862 -12.95925 -12.47524 -12.36465 -12.18384 -12.06475 -11.62099 -11.54297 -11.43151 -11.08634 -10.96853 -10.53351 -10.45751 -10.39839 -9.99785 -9.63941 -9.59413 -9.22164 -8.96119 -8.33160 -8.29968 -5.95697 -3.97737 3.33282 3.40471 3.44876 3.49152 4.17039 4.47462 4.49739 4.61484 4.80880 4.99152 5.08324 5.36421 5.39338 5.40152 5.52406 5.54859 5.58936 5.61019 5.65656 5.77928 5.80441 5.93650 5.95453 6.02361 6.10913 6.19537 6.28125 6.37104 6.55302 6.86432 7.00171 7.09210 7.27230 7.46798 7.74073 7.90011 8.05814 8.48741 9.10096 9.66047 11.15717 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.066777 B = 0.003458 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.207812 B = 8095.527011 C = 8351.810725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 H 0.102 0.898 4 C -0.177 4.177 5 C -0.118 4.118 6 C -0.111 4.111 7 C 0.097 3.903 8 N -0.687 5.687 9 C 0.059 3.941 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.340 0.660 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 17.623 -12.946 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 H 0.120 0.880 4 C -0.214 4.214 5 C -0.119 4.119 6 C -0.168 4.168 7 C -0.032 4.032 8 N -0.318 5.318 9 C -0.070 4.070 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.078 17.900 -12.305 21.938 hybrid contribution -0.823 -1.277 -0.315 1.551 sum -3.901 16.623 -12.620 21.232 Atomic orbital electron populations 1.21344 0.93033 1.01748 1.01881 1.22440 0.95172 0.94391 1.04874 0.87986 1.23335 1.02410 1.01510 0.94108 1.21638 0.98605 0.99082 0.92552 1.21267 0.93549 1.02572 0.99453 1.21386 0.93572 0.92210 0.96048 1.60512 1.20148 1.17556 1.33533 1.22073 0.95593 0.92205 0.97080 1.21630 0.98233 0.95916 0.99515 1.21590 0.98607 0.96218 0.98307 1.19096 0.94506 0.92864 0.95185 1.21336 0.93103 1.09824 1.31480 0.92733 1.25041 0.94900 0.98018 0.96639 1.69985 1.08057 1.32809 1.42725 0.86554 0.80559 0.81558 0.79445 1.19772 1.21059 1.21021 0.92110 0.92367 0.92609 0.88963 0.89115 0.89946 0.93457 0.92664 0.95402 0.90875 0.84239 0.95712 0.91332 0.91643 0.92782 0.93462 0.93721 0.96743 0.96589 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.21 37.16 0.34 -0.63 16 2 C -0.15 -1.30 6.13 -90.58 -0.56 -1.86 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.18 -1.56 9.47 -26.69 -0.25 -1.82 16 5 C -0.12 -1.17 2.50 -154.51 -0.39 -1.55 16 6 C -0.11 -1.11 9.73 37.16 0.36 -0.75 16 7 C 0.10 1.08 4.85 -3.82 -0.02 1.06 16 8 N -0.69 -8.74 5.02 -113.78 -0.57 -9.31 16 9 C 0.06 0.86 5.69 -3.82 -0.02 0.83 16 10 C -0.11 -2.00 5.47 -26.73 -0.15 -2.15 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.06 0.48 8.02 -51.93 -0.42 0.07 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.44 7.77 -51.93 -0.40 0.04 16 24 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 25 H 0.09 0.80 7.96 -51.93 -0.41 0.38 16 26 H 0.08 0.92 6.70 -51.93 -0.35 0.57 16 27 H 0.05 0.42 7.90 -51.93 -0.41 0.01 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.03 0.31 7.77 -51.93 -0.40 -0.10 16 30 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 31 H 0.34 4.14 8.62 -39.29 -0.34 3.80 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -30.01 323.35 -9.11 -39.11 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.76 Total: -2.12 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.36 Total: -22.79 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.16 Total: -36.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.01 -9.11 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704271667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.779 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds