Wall clock time and date at job start Mon Mar 30 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 115.55975 * 2 1 4 4 C 1.53069 * 117.51680 * 214.29142 * 2 1 3 5 5 C 1.53004 * 59.98816 * 252.52410 * 4 2 1 6 6 C 1.52996 * 117.49629 * 252.49673 * 5 4 2 7 7 C 1.52997 * 117.49920 * 107.49761 * 5 4 2 8 8 N 1.46907 * 109.46765 * 111.25455 * 7 5 4 9 9 C 1.46902 * 110.99665 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46901 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 H 1.09006 * 109.46994 * 274.31067 * 1 2 3 22 22 H 1.08995 * 109.47436 * 34.31228 * 1 2 3 23 23 H 1.09007 * 109.46988 * 154.31835 * 1 2 3 24 24 H 1.09002 * 117.49654 * 145.03540 * 4 2 1 25 25 H 1.09002 * 117.53069 * 359.97438 * 4 2 1 26 26 H 1.08998 * 109.47393 * 248.74065 * 6 5 4 27 27 H 1.09001 * 109.47038 * 8.75152 * 6 5 4 28 28 H 1.09006 * 109.46725 * 128.74591 * 6 5 4 29 29 H 1.08995 * 109.47319 * 351.25725 * 7 5 4 30 30 H 1.08993 * 109.46983 * 231.25355 * 7 5 4 31 31 H 1.00898 * 110.99982 * 303.95153 * 8 7 5 32 32 H 1.09001 * 109.46712 * 60.00151 * 9 8 7 33 33 H 1.09002 * 109.47411 * 300.00262 * 9 8 7 34 34 H 1.09001 * 109.46652 * 60.00371 * 10 9 8 35 35 H 1.08992 * 109.47514 * 300.00460 * 10 9 8 36 36 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 37 37 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 38 38 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 39 39 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 40 40 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2372 -1.1216 -0.7648 5 6 2.2364 -1.1209 0.7652 6 6 3.5487 -0.7757 1.4720 7 6 1.3588 -2.1561 1.4717 8 7 2.2125 -3.1447 2.1439 9 6 1.4022 -4.1565 2.8351 10 6 2.3242 -5.1667 3.5211 11 6 1.4803 -6.2208 4.2404 12 6 2.4022 -7.2306 4.9269 13 6 1.5711 -8.2693 5.6350 14 1 0.4930 -8.2149 5.5986 15 6 2.1868 -9.2896 6.3283 16 7 3.4996 -9.3561 6.3722 17 14 1.1566 -10.5767 7.2066 18 1 -0.2843 -10.2787 7.0058 19 1 1.4655 -11.9198 6.6535 20 1 1.4694 -10.5552 8.6580 21 1 -0.3633 0.0772 1.0248 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9262 -0.4454 24 1 3.1724 -0.8757 -1.2678 25 1 1.6127 -1.8599 -1.2678 26 1 3.9372 -1.6636 1.9709 27 1 4.2745 -0.4237 0.7390 28 1 3.3691 0.0062 2.2099 29 1 0.7284 -2.6591 0.7384 30 1 0.7306 -1.6569 2.2094 31 1 2.8498 -3.5756 1.4910 32 1 0.7718 -4.6734 2.1115 33 1 0.7746 -3.6710 3.5824 34 1 2.9549 -4.6499 4.2445 35 1 2.9515 -5.6521 2.7736 36 1 0.8526 -5.7356 4.9879 37 1 0.8499 -6.7374 3.5166 38 1 3.0301 -7.7158 4.1797 39 1 3.0323 -6.7138 5.6507 40 1 3.9328 -10.0741 6.8597 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704271667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:58 Heat of formation + Delta-G solvation = -27.652581 kcal Electronic energy + Delta-G solvation = -15049.483406 eV Core-core repulsion = 12669.859666 eV Total energy + Delta-G solvation = -2379.623740 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89240 -37.49584 -35.67770 -33.90126 -31.08646 -30.00580 -27.85336 -27.13933 -25.18999 -22.87272 -21.94417 -21.77960 -19.49895 -18.41670 -17.03377 -16.55405 -16.25707 -16.01947 -15.40938 -15.16631 -14.49355 -14.22846 -14.08172 -13.78214 -13.54531 -13.48854 -13.04111 -12.93543 -12.84739 -12.76081 -12.32039 -12.27978 -12.18306 -12.10739 -11.84835 -11.37652 -11.30166 -11.03003 -10.68343 -10.55962 -10.34145 -9.33995 -8.20026 -6.31526 1.39581 1.40129 1.53697 2.40932 2.76660 3.12664 3.20907 3.76962 3.90070 3.99224 4.12969 4.19587 4.24475 4.45114 4.55151 4.57793 4.67675 4.72335 4.83125 4.89732 4.93517 4.94285 4.95166 5.05299 5.12157 5.20451 5.25035 5.27989 5.28433 5.36292 5.44252 5.55284 5.55731 5.78223 5.87076 6.10827 6.26014 6.46755 6.86302 7.37854 8.92117 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.066777 B = 0.003458 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.207812 B = 8095.527011 C = 8351.810725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 H 0.109 0.891 4 C -0.173 4.173 5 C -0.131 4.131 6 C -0.108 4.108 7 C 0.101 3.899 8 N -0.690 5.690 9 C 0.071 3.929 10 C -0.104 4.104 11 C -0.097 4.097 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.343 0.657 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.050 0.950 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 18.116 -13.567 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 H 0.127 0.873 4 C -0.209 4.209 5 C -0.132 4.132 6 C -0.166 4.166 7 C -0.028 4.028 8 N -0.321 5.321 9 C -0.058 4.058 10 C -0.142 4.142 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.360 18.410 -12.939 22.921 hybrid contribution -0.380 -1.404 -0.137 1.461 sum -4.740 17.005 -13.076 21.969 Atomic orbital electron populations 1.21361 0.92469 1.02226 1.01982 1.22531 0.95652 0.94400 1.03687 0.87270 1.23378 1.02806 1.01540 0.93219 1.21588 0.98643 0.99758 0.93186 1.21219 0.93927 1.01812 0.99607 1.21365 0.93532 0.91968 0.95940 1.60459 1.20293 1.17236 1.34133 1.21840 0.94879 0.91881 0.97197 1.21451 0.98062 0.95598 0.99131 1.21403 0.97934 0.95859 0.98354 1.19025 0.94677 0.93585 0.94170 1.21780 0.93657 1.10763 1.32044 0.92212 1.26035 0.96200 1.00483 0.97396 1.70116 1.09997 1.33838 1.43552 0.85369 0.79103 0.78323 0.78073 1.18531 1.20278 1.20294 0.92317 0.91151 0.92790 0.88236 0.89021 0.91407 0.92443 0.92904 0.95078 0.91274 0.83846 0.95099 0.91217 0.92609 0.92851 0.93113 0.93155 0.99202 0.99243 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.21 71.98 0.66 -1.04 16 2 C -0.14 -2.21 6.13 -10.77 -0.07 -2.28 16 3 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.17 -2.72 9.47 30.62 0.29 -2.43 16 5 C -0.13 -2.39 2.50 -52.18 -0.13 -2.52 16 6 C -0.11 -2.05 9.73 71.98 0.70 -1.35 16 7 C 0.10 2.10 4.85 86.30 0.42 2.52 16 8 N -0.69 -16.84 5.02 -513.88 -2.58 -19.42 16 9 C 0.07 1.97 5.69 86.30 0.49 2.46 16 10 C -0.10 -3.61 5.47 30.59 0.17 -3.45 16 11 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 12 C 0.02 1.23 4.97 29.85 0.15 1.38 16 13 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 16 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 17 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H 0.06 0.84 8.02 -2.38 -0.02 0.82 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 0.76 7.77 -2.38 -0.02 0.74 16 24 H 0.10 1.42 8.05 -2.39 -0.02 1.40 16 25 H 0.09 1.43 7.96 -2.39 -0.02 1.41 16 26 H 0.07 1.47 6.70 -2.39 -0.02 1.46 16 27 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 28 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.03 0.63 7.77 -2.39 -0.02 0.61 16 30 H 0.07 1.49 8.02 -2.39 -0.02 1.47 16 31 H 0.34 8.03 8.62 -89.70 -0.77 7.25 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -63.78 323.35 3.46 -60.33 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.19 Total: 12.06 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 3.54 Total: -42.10 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.30 Total: -77.35 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.78 3.46 -60.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704271667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.673 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds