Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 N 1.46501 * 109.47073 * 119.99739 * 2 1 3 5 5 C 1.36931 * 120.00257 * 114.60248 * 4 2 1 6 6 H 1.07998 * 120.00525 * 253.08384 * 5 4 2 7 7 C 1.38814 * 119.99569 * 73.07955 * 5 4 2 8 8 N 1.31620 * 120.00143 * 167.77983 * 7 5 4 9 9 Si 1.86801 * 120.00324 * 347.77562 * 7 5 4 10 10 H 1.48503 * 109.47068 * 84.31606 * 9 7 5 11 11 H 1.48501 * 109.47345 * 204.31674 * 9 7 5 12 12 H 1.48500 * 109.46952 * 324.31692 * 9 7 5 13 13 C 1.46508 * 120.00163 * 294.60796 * 4 2 1 14 14 H 1.09003 * 109.46378 * 351.34092 * 13 4 2 15 15 C 1.53000 * 109.47092 * 231.34182 * 13 4 2 16 16 C 1.53001 * 109.47020 * 299.99781 * 15 13 4 17 17 C 1.52993 * 109.47183 * 300.00185 * 16 15 13 18 18 C 1.53000 * 109.47293 * 59.99983 * 17 16 15 19 19 C 1.52993 * 109.47134 * 111.33983 * 13 4 2 20 20 H 1.09005 * 109.47325 * 180.02562 * 19 13 4 21 21 C 1.53000 * 109.47293 * 300.00076 * 19 13 4 22 22 H 1.09006 * 109.47322 * 300.00659 * 1 2 3 23 23 H 1.09006 * 109.46993 * 59.99878 * 1 2 3 24 24 H 1.08994 * 109.47542 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47124 * 239.99587 * 2 1 3 26 26 H 1.08996 * 109.46990 * 183.88657 * 3 2 1 27 27 H 1.09008 * 109.46897 * 303.88613 * 3 2 1 28 28 H 1.09002 * 109.47223 * 63.88152 * 3 2 1 29 29 H 0.97002 * 120.00451 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46877 * 59.99493 * 15 13 4 31 31 H 1.08994 * 109.47047 * 179.97438 * 15 13 4 32 32 H 1.09005 * 109.46915 * 60.00343 * 16 15 13 33 33 H 1.08992 * 109.46955 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.47274 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.46816 * 300.00006 * 17 16 15 36 36 H 1.09003 * 109.47204 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.47047 * 60.00182 * 18 17 16 38 38 H 1.09003 * 109.47171 * 60.00240 * 21 19 13 39 39 H 1.09003 * 109.47204 * 179.97438 * 21 19 13 40 40 H 1.09000 * 109.47318 * 299.99869 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7120 -1.8648 1.0737 6 1 2.2437 -2.7995 1.3447 7 6 4.0172 -1.8537 0.6012 8 7 4.7645 -2.9320 0.7068 9 14 4.7130 -0.3085 -0.1846 10 1 5.2243 0.5983 0.8744 11 1 5.8230 -0.6756 -1.1003 12 1 3.6449 0.3802 -0.9528 13 6 1.7644 -0.1249 2.5236 14 1 1.3413 0.8741 2.4179 15 6 3.0785 -0.0424 3.3028 16 6 3.6723 -1.4447 3.4511 17 6 2.6869 -2.3386 4.2063 18 6 1.3727 -2.4211 3.4272 19 6 0.7789 -1.0188 3.2789 20 1 0.5896 -0.5977 4.2664 21 6 -0.5353 -1.1012 2.4998 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1278 1.4432 -0.0697 27 1 1.6209 1.9761 -0.8532 28 1 1.7346 1.9359 0.9227 29 1 5.6767 -2.9242 0.3769 30 1 3.7806 0.5944 2.7646 31 1 2.8897 0.3788 4.2901 32 1 3.8613 -1.8655 2.4634 33 1 4.6087 -1.3859 4.0057 34 1 3.1101 -3.3375 4.3124 35 1 2.4980 -1.9177 5.1939 36 1 0.6707 -3.0583 3.9651 37 1 1.5616 -2.8419 2.4397 38 1 -0.3464 -1.5222 1.5122 39 1 -1.2372 -1.7385 3.0377 40 1 -0.9584 -0.1023 2.3941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705003137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = 46.586448 kcal Electronic energy + Delta-G solvation = -18077.039771 eV Core-core repulsion = 15700.635277 eV Total energy + Delta-G solvation = -2376.404494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.10208 -35.00505 -32.95851 -31.22647 -30.29770 -28.73027 -26.86659 -25.17146 -23.39028 -21.30279 -20.49726 -19.79339 -17.82722 -16.84896 -15.38399 -14.61709 -14.34519 -13.74015 -13.43593 -13.16403 -12.77045 -12.74197 -12.58441 -12.33549 -11.49279 -11.28503 -11.07603 -10.95594 -10.86565 -10.83733 -10.69944 -10.46217 -10.31604 -9.86088 -9.79437 -9.56434 -9.25880 -9.02789 -8.93997 -8.81984 -7.72228 -6.30616 -5.77380 -3.80459 3.36752 3.44924 3.46920 4.49509 5.05775 5.18973 5.67606 5.74941 5.82914 5.92149 6.04000 6.17007 6.22712 6.26092 6.31701 6.41855 6.44115 6.47495 6.51879 6.58087 6.61885 6.65981 6.73994 6.82081 6.83683 6.92909 6.95334 7.06199 7.12162 7.16636 7.39264 7.44158 7.47310 7.58125 8.06585 8.40958 8.76210 9.19757 9.55733 10.27999 11.00472 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.018281 C = 0.012803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.427298 B = 1531.256529 C = 2186.513325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.155 3.845 3 C -0.179 4.179 4 N -0.595 5.595 5 C -0.271 4.271 6 H 0.086 0.914 7 C 0.056 3.944 8 N -0.892 5.892 9 Si 0.859 3.141 10 H -0.281 1.281 11 H -0.308 1.308 12 H -0.229 1.229 13 C 0.181 3.819 14 H 0.044 0.956 15 C -0.111 4.111 16 C -0.174 4.174 17 C -0.092 4.092 18 C -0.129 4.129 19 C -0.092 4.092 20 H 0.042 0.958 21 C -0.148 4.148 22 H 0.053 0.947 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.266 0.734 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.176 0.824 33 H 0.015 0.985 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 5.225 1.498 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.237 4.237 4 N -0.318 5.318 5 C -0.400 4.400 6 H 0.103 0.897 7 C -0.148 4.148 8 N -0.530 5.530 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.236 1.236 12 H -0.154 1.154 13 C 0.075 3.925 14 H 0.063 0.937 15 C -0.150 4.150 16 C -0.209 4.209 17 C -0.130 4.130 18 C -0.166 4.166 19 C -0.113 4.113 20 H 0.060 0.940 21 C -0.205 4.205 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.193 0.807 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.889 5.139 1.466 7.952 hybrid contribution 0.604 0.926 -0.038 1.106 sum -5.284 6.064 1.428 8.169 Atomic orbital electron populations 1.22757 0.98992 1.00971 0.99853 1.20745 0.91362 0.91187 0.91741 1.22759 1.01971 0.98941 1.00004 1.44027 1.64436 1.24760 0.98603 1.18573 0.92640 0.86042 1.42760 0.89737 1.26123 0.96442 0.96294 0.95926 1.69879 1.08455 1.29225 1.45477 0.87504 0.78669 0.84501 0.80471 1.20755 1.23624 1.15359 1.20391 0.92514 0.93455 0.86180 0.93749 1.21684 0.97984 0.98211 0.97139 1.22774 0.94577 0.95066 1.08506 1.21186 0.96603 0.98755 0.96463 1.22089 0.94799 0.95776 1.03899 1.21407 0.95303 0.97601 0.96953 0.94001 1.22253 0.96377 0.99617 1.02266 0.92783 0.94862 0.92281 0.91151 0.92210 0.93962 0.93439 0.92436 0.93832 0.95137 0.80715 0.96631 0.93848 0.95778 0.95734 0.86687 0.90166 0.95105 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 7.58 37.16 0.28 -2.52 16 2 C 0.16 3.05 2.16 -67.93 -0.15 2.90 16 3 C -0.18 -3.27 8.21 37.16 0.31 -2.97 16 4 N -0.59 -12.73 1.00 -158.29 -0.16 -12.89 16 5 C -0.27 -6.66 5.47 -15.06 -0.08 -6.74 16 6 H 0.09 2.29 5.10 -52.49 -0.27 2.02 16 7 C 0.06 1.44 3.71 -17.43 -0.06 1.38 16 8 N -0.89 -24.87 13.55 55.49 0.75 -24.12 16 9 Si 0.86 20.41 24.61 -169.99 -4.18 16.22 16 10 H -0.28 -6.90 7.03 56.52 0.40 -6.50 16 11 H -0.31 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.23 -4.96 3.66 56.52 0.21 -4.76 16 13 C 0.18 3.63 2.01 -67.93 -0.14 3.49 16 14 H 0.04 0.85 6.10 -51.93 -0.32 0.54 16 15 C -0.11 -2.37 5.57 -26.73 -0.15 -2.52 16 16 C -0.17 -3.99 5.57 -26.73 -0.15 -4.14 16 17 C -0.09 -1.94 5.92 -26.73 -0.16 -2.10 16 18 C -0.13 -2.62 4.89 -26.73 -0.13 -2.75 16 19 C -0.09 -1.74 2.54 -90.62 -0.23 -1.97 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.15 -2.52 7.50 37.16 0.28 -2.25 16 22 H 0.05 0.88 5.13 -51.93 -0.27 0.61 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 1.02 6.23 -51.93 -0.32 0.69 16 25 H 0.07 1.49 6.65 -51.93 -0.35 1.15 16 26 H 0.06 1.19 3.85 -51.93 -0.20 0.99 16 27 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.05 0.83 6.47 -51.93 -0.34 0.49 16 29 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.04 0.97 7.69 -51.93 -0.40 0.57 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.18 4.46 2.07 -52.18 -0.11 4.35 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.12 2.64 3.86 -51.93 -0.20 2.44 16 38 H 0.08 1.46 4.52 -51.93 -0.23 1.23 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.64 6.54 -51.93 -0.34 0.30 16 LS Contribution 263.84 15.07 3.98 3.98 Total: -1.00 -25.41 263.84 -6.47 -31.88 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.48 Total: 5.10 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -0.38 Total: -20.17 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.59 Total: -37.01 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.18 Total: 16.22 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -25.41 -6.47 -31.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705003137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.468 kcal (2) G-P(sol) polarization free energy of solvation -25.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds