Wall clock time and date at job start Mon Mar 30 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 N 1.46501 * 109.47073 * 119.99739 * 2 1 3 5 5 C 1.36931 * 120.00257 * 114.60248 * 4 2 1 6 6 H 1.07998 * 120.00525 * 253.08384 * 5 4 2 7 7 C 1.38814 * 119.99569 * 73.07955 * 5 4 2 8 8 N 1.31620 * 120.00143 * 167.77983 * 7 5 4 9 9 Si 1.86801 * 120.00324 * 347.77562 * 7 5 4 10 10 H 1.48503 * 109.47068 * 84.31606 * 9 7 5 11 11 H 1.48501 * 109.47345 * 204.31674 * 9 7 5 12 12 H 1.48500 * 109.46952 * 324.31692 * 9 7 5 13 13 C 1.46508 * 120.00163 * 294.60796 * 4 2 1 14 14 H 1.09003 * 109.46378 * 351.34092 * 13 4 2 15 15 C 1.53000 * 109.47092 * 231.34182 * 13 4 2 16 16 C 1.53001 * 109.47020 * 299.99781 * 15 13 4 17 17 C 1.52993 * 109.47183 * 300.00185 * 16 15 13 18 18 C 1.53000 * 109.47293 * 59.99983 * 17 16 15 19 19 C 1.52993 * 109.47134 * 111.33983 * 13 4 2 20 20 H 1.09005 * 109.47325 * 180.02562 * 19 13 4 21 21 C 1.53000 * 109.47293 * 300.00076 * 19 13 4 22 22 H 1.09006 * 109.47322 * 300.00659 * 1 2 3 23 23 H 1.09006 * 109.46993 * 59.99878 * 1 2 3 24 24 H 1.08994 * 109.47542 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47124 * 239.99587 * 2 1 3 26 26 H 1.08996 * 109.46990 * 183.88657 * 3 2 1 27 27 H 1.09008 * 109.46897 * 303.88613 * 3 2 1 28 28 H 1.09002 * 109.47223 * 63.88152 * 3 2 1 29 29 H 0.97002 * 120.00451 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46877 * 59.99493 * 15 13 4 31 31 H 1.08994 * 109.47047 * 179.97438 * 15 13 4 32 32 H 1.09005 * 109.46915 * 60.00343 * 16 15 13 33 33 H 1.08992 * 109.46955 * 179.97438 * 16 15 13 34 34 H 1.09006 * 109.47274 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.46816 * 300.00006 * 17 16 15 36 36 H 1.09003 * 109.47204 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.47047 * 60.00182 * 18 17 16 38 38 H 1.09003 * 109.47171 * 60.00240 * 21 19 13 39 39 H 1.09003 * 109.47204 * 179.97438 * 21 19 13 40 40 H 1.09000 * 109.47318 * 299.99869 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7120 -1.8648 1.0737 6 1 2.2437 -2.7995 1.3447 7 6 4.0172 -1.8537 0.6012 8 7 4.7645 -2.9320 0.7068 9 14 4.7130 -0.3085 -0.1846 10 1 5.2243 0.5983 0.8744 11 1 5.8230 -0.6756 -1.1003 12 1 3.6449 0.3802 -0.9528 13 6 1.7644 -0.1249 2.5236 14 1 1.3413 0.8741 2.4179 15 6 3.0785 -0.0424 3.3028 16 6 3.6723 -1.4447 3.4511 17 6 2.6869 -2.3386 4.2063 18 6 1.3727 -2.4211 3.4272 19 6 0.7789 -1.0188 3.2789 20 1 0.5896 -0.5977 4.2664 21 6 -0.5353 -1.1012 2.4998 22 1 -0.3634 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1278 1.4432 -0.0697 27 1 1.6209 1.9761 -0.8532 28 1 1.7346 1.9359 0.9227 29 1 5.6767 -2.9242 0.3769 30 1 3.7806 0.5944 2.7646 31 1 2.8897 0.3788 4.2901 32 1 3.8613 -1.8655 2.4634 33 1 4.6087 -1.3859 4.0057 34 1 3.1101 -3.3375 4.3124 35 1 2.4980 -1.9177 5.1939 36 1 0.6707 -3.0583 3.9651 37 1 1.5616 -2.8419 2.4397 38 1 -0.3464 -1.5222 1.5122 39 1 -1.2372 -1.7385 3.0377 40 1 -0.9584 -0.1023 2.3941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705003137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:02 Heat of formation + Delta-G solvation = 33.622679 kcal Electronic energy + Delta-G solvation = -18077.601922 eV Core-core repulsion = 15700.635277 eV Total energy + Delta-G solvation = -2376.966645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75940 -36.59550 -34.79366 -32.88414 -31.93381 -30.47705 -28.30627 -26.77557 -25.12433 -22.93994 -22.06485 -21.53190 -19.55463 -18.62984 -17.10083 -16.25381 -16.01278 -15.39684 -15.14740 -14.84504 -14.45349 -14.34495 -14.13216 -13.92279 -13.09329 -12.86998 -12.75592 -12.64683 -12.53974 -12.40535 -12.27843 -12.12220 -11.93448 -11.59987 -11.32192 -11.13751 -10.97654 -10.68826 -10.66667 -10.43898 -9.66998 -8.24864 -7.58777 -5.79170 1.43354 1.49611 1.53989 2.53507 3.17762 3.47465 4.12320 4.22718 4.25499 4.41986 4.55573 4.67209 4.69412 4.75658 4.79458 4.90544 4.94414 4.99611 5.02318 5.02518 5.10411 5.14392 5.20447 5.28102 5.30045 5.34501 5.37577 5.57896 5.60233 5.68411 5.73142 5.78872 5.83556 5.95023 6.09102 6.52615 6.75838 7.40498 7.71186 8.37985 9.02859 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.018281 C = 0.012803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.427298 B = 1531.256529 C = 2186.513325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 C -0.175 4.175 4 N -0.601 5.601 5 C -0.237 4.237 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.937 5.937 9 Si 0.892 3.108 10 H -0.294 1.294 11 H -0.328 1.328 12 H -0.191 1.191 13 C 0.179 3.821 14 H 0.066 0.934 15 C -0.110 4.110 16 C -0.184 4.184 17 C -0.089 4.089 18 C -0.126 4.126 19 C -0.090 4.090 20 H 0.059 0.941 21 C -0.142 4.142 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.258 0.742 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.153 0.847 33 H 0.003 0.997 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 7.341 1.887 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 C -0.233 4.233 4 N -0.325 5.325 5 C -0.368 4.368 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.578 5.578 9 Si 0.722 3.278 10 H -0.221 1.221 11 H -0.258 1.258 12 H -0.114 1.114 13 C 0.074 3.926 14 H 0.084 0.916 15 C -0.148 4.148 16 C -0.220 4.220 17 C -0.127 4.127 18 C -0.162 4.162 19 C -0.110 4.110 20 H 0.077 0.923 21 C -0.198 4.198 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.170 0.830 33 H 0.022 0.978 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.475 7.283 1.844 11.326 hybrid contribution 1.360 0.237 -0.094 1.384 sum -7.116 7.520 1.750 10.500 Atomic orbital electron populations 1.22590 0.96236 1.01065 1.01500 1.20839 0.93531 0.91547 0.89899 1.22683 1.00589 0.98145 1.01920 1.44114 1.64431 1.23951 1.00037 1.18401 0.92043 0.86511 1.39810 0.92388 1.26565 0.97008 0.97708 0.97195 1.69988 1.08546 1.31170 1.48097 0.87055 0.78513 0.82518 0.79677 1.22116 1.25829 1.11424 1.20501 0.92210 0.94725 0.85168 0.91620 1.21680 0.98227 0.96538 0.98395 1.22759 0.95019 0.96814 1.07414 1.21145 0.96496 0.97737 0.97306 1.21979 0.94772 0.97263 1.02210 1.21388 0.95720 0.95966 0.97946 0.92306 1.22169 0.95495 1.00940 1.01228 0.91665 0.92608 0.93051 0.93185 0.94219 0.91230 0.92258 0.93238 0.95550 0.92946 0.83004 0.97820 0.95156 0.93763 0.94197 0.89635 0.91619 0.93907 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 7.58 71.98 0.55 -4.05 16 2 C 0.15 5.35 2.16 44.99 0.10 5.45 16 3 C -0.18 -5.74 8.21 71.98 0.59 -5.15 16 4 N -0.60 -24.74 1.00 -654.71 -0.65 -25.40 16 5 C -0.24 -11.75 5.47 84.03 0.46 -11.29 16 6 H 0.06 3.25 5.10 -2.91 -0.01 3.24 16 7 C 0.01 0.73 3.71 84.86 0.32 1.05 16 8 N -0.94 -54.59 13.55 21.65 0.29 -54.30 16 9 Si 0.89 42.42 24.61 68.60 1.69 44.11 16 10 H -0.29 -14.47 7.03 99.48 0.70 -13.77 16 11 H -0.33 -16.61 7.11 99.48 0.71 -15.90 16 12 H -0.19 -7.91 3.66 99.48 0.36 -7.55 16 13 C 0.18 6.69 2.01 44.99 0.09 6.78 16 14 H 0.07 2.21 6.10 -2.39 -0.01 2.20 16 15 C -0.11 -4.48 5.57 30.59 0.17 -4.31 16 16 C -0.18 -8.48 5.57 30.59 0.17 -8.31 16 17 C -0.09 -3.67 5.92 30.59 0.18 -3.49 16 18 C -0.13 -4.90 4.89 30.59 0.15 -4.75 16 19 C -0.09 -3.09 2.54 -10.80 -0.03 -3.12 16 20 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 21 C -0.14 -4.26 7.50 71.98 0.54 -3.72 16 22 H 0.06 1.79 5.13 -2.38 -0.01 1.77 16 23 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.05 1.61 6.23 -2.39 -0.01 1.60 16 25 H 0.05 2.02 6.65 -2.39 -0.02 2.00 16 26 H 0.04 1.45 3.85 -2.39 -0.01 1.45 16 27 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.06 1.81 6.47 -2.39 -0.02 1.79 16 29 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.03 1.14 7.69 -2.38 -0.02 1.12 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.15 7.92 2.07 -2.63 -0.01 7.92 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 3.93 3.86 -2.39 -0.01 3.92 16 38 H 0.07 2.19 4.52 -2.39 -0.01 2.18 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.58 6.54 -2.39 -0.02 1.56 16 Total: -1.00 -55.70 263.84 5.28 -50.42 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.67 Total: 20.08 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.28 Total: -34.91 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -0.36 Total: -79.70 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.69 Total: 44.11 kcal Total: -55.70 5.28 -50.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705003137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.044 kcal (2) G-P(sol) polarization free energy of solvation -55.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds