Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46783 * 2 1 4 4 N 1.46499 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99458 * 271.78987 * 4 3 2 6 6 H 1.08004 * 119.99955 * 198.07655 * 5 4 3 7 7 C 1.38816 * 120.00027 * 18.08778 * 5 4 3 8 8 N 1.31618 * 119.99855 * 350.60824 * 7 5 4 9 9 Si 1.86800 * 119.99930 * 170.61447 * 7 5 4 10 10 H 1.48500 * 109.47110 * 59.99713 * 9 7 5 11 11 H 1.48504 * 109.46901 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47034 * 299.99465 * 9 7 5 13 13 C 1.46496 * 120.00514 * 91.79432 * 4 3 2 14 14 H 1.08996 * 109.46714 * 352.28476 * 13 4 3 15 15 C 1.53002 * 109.47005 * 232.28768 * 13 4 3 16 16 C 1.52999 * 109.47360 * 299.99976 * 15 13 4 17 17 C 1.52997 * 109.46642 * 300.00106 * 16 15 13 18 18 C 1.52994 * 109.47425 * 60.00059 * 17 16 15 19 19 C 1.52997 * 109.47369 * 112.28840 * 13 4 3 20 20 H 1.08994 * 109.47302 * 180.02562 * 19 13 4 21 21 C 1.53002 * 109.46998 * 299.99932 * 19 13 4 22 22 H 1.08998 * 109.46871 * 60.00359 * 1 2 3 23 23 H 1.09002 * 109.46485 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47453 * 300.00357 * 1 2 3 25 25 H 1.08991 * 109.47035 * 239.99973 * 2 1 3 26 26 H 1.08999 * 109.46983 * 119.99097 * 2 1 3 27 27 H 1.09000 * 109.47771 * 59.99719 * 3 2 1 28 28 H 1.09007 * 109.47057 * 299.99803 * 3 2 1 29 29 H 0.96996 * 119.99549 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47036 * 179.97438 * 15 13 4 31 31 H 1.09006 * 109.47030 * 59.99859 * 15 13 4 32 32 H 1.08992 * 109.47041 * 179.97438 * 16 15 13 33 33 H 1.08994 * 109.46863 * 59.99819 * 16 15 13 34 34 H 1.09004 * 109.47406 * 299.99477 * 17 16 15 35 35 H 1.09004 * 109.47015 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47607 * 59.99968 * 18 17 16 37 37 H 1.09006 * 109.47125 * 179.97438 * 18 17 16 38 38 H 1.09006 * 109.47030 * 179.97438 * 21 19 13 39 39 H 1.08998 * 109.47010 * 299.99874 * 21 19 13 40 40 H 1.09006 * 109.46958 * 60.00391 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4054 1.1845 6 1 5.2302 1.6948 1.2164 7 6 3.5479 0.9955 2.3449 8 7 2.2434 0.8206 2.3484 9 14 4.5351 0.6924 3.9015 10 1 5.2297 1.9435 4.2986 11 1 3.6214 0.2665 4.9920 12 1 5.5387 -0.3731 3.6515 13 6 4.2371 1.4826 -1.2689 14 1 3.5365 1.3705 -2.0964 15 6 5.2563 0.3420 -1.3056 16 6 6.2396 0.4991 -0.1440 17 6 6.9682 1.8385 -0.2704 18 6 5.9491 2.9790 -0.2337 19 6 4.9657 2.8219 -1.3953 20 1 5.5100 2.8518 -2.3391 21 6 3.9465 3.9624 -1.3586 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.6767 1.9565 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 1.7946 0.5345 3.1593 30 1 5.8006 0.3715 -2.2495 31 1 4.7371 -0.6122 -1.2156 32 1 6.9653 -0.3136 -0.1700 33 1 5.6949 0.4694 0.7996 34 1 7.5130 1.8682 -1.2141 35 1 7.6691 1.9503 0.5568 36 1 5.4044 2.9494 0.7100 37 1 6.4683 3.9333 -0.3233 38 1 4.4657 4.9167 -1.4481 39 1 3.2460 3.8505 -2.1861 40 1 3.4019 3.9328 -0.4148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705003263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = 39.428455 kcal Electronic energy + Delta-G solvation = -17620.350945 eV Core-core repulsion = 15243.636058 eV Total energy + Delta-G solvation = -2376.714888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.03666 -34.77434 -32.03843 -31.45304 -30.88904 -28.67510 -25.62588 -25.45259 -22.77728 -21.02965 -20.36348 -19.94351 -18.57402 -16.80707 -14.64939 -14.51979 -13.96776 -13.62776 -13.40321 -13.06068 -12.87407 -12.59455 -12.16991 -11.89706 -11.36698 -11.22936 -11.02053 -10.84922 -10.82604 -10.72847 -10.62503 -10.32758 -10.17125 -10.03127 -9.90910 -9.83332 -9.29462 -9.20596 -9.04595 -8.45299 -7.83693 -6.54824 -5.58421 -3.01726 3.40127 3.46074 3.48414 4.52622 5.35569 5.44273 5.58859 5.69305 5.83092 6.02728 6.09446 6.22883 6.32454 6.34493 6.35826 6.42714 6.46381 6.51491 6.59928 6.63812 6.70945 6.73298 6.82558 6.86829 7.00893 7.05378 7.16088 7.18960 7.24418 7.33449 7.39017 7.53255 7.61248 7.83231 8.02784 8.26727 8.57280 9.37790 10.00806 10.47985 11.35207 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.015457 C = 0.010797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.204760 B = 1811.022739 C = 2592.573147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.176 3.824 4 N -0.592 5.592 5 C -0.253 4.253 6 H 0.117 0.883 7 C -0.009 4.009 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.180 3.820 14 H 0.046 0.954 15 C -0.111 4.111 16 C -0.163 4.163 17 C -0.109 4.109 18 C -0.136 4.136 19 C -0.096 4.096 20 H 0.044 0.956 21 C -0.134 4.134 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.007 0.993 26 H 0.097 0.903 27 H 0.099 0.901 28 H -0.008 1.008 29 H 0.248 0.752 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.137 0.863 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.113 0.887 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 1.687 -5.106 6.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.052 3.948 4 N -0.313 5.313 5 C -0.381 4.381 6 H 0.133 0.867 7 C -0.205 4.205 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.211 1.211 13 C 0.072 3.928 14 H 0.064 0.936 15 C -0.151 4.151 16 C -0.199 4.199 17 C -0.147 4.147 18 C -0.173 4.173 19 C -0.117 4.117 20 H 0.063 0.937 21 C -0.192 4.192 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.010 0.990 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.154 0.846 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.765 1.652 -4.958 5.912 hybrid contribution 0.559 -0.363 0.614 0.906 sum 3.324 1.289 -4.344 5.620 Atomic orbital electron populations 1.21612 0.99053 0.98758 0.99879 1.22360 0.92428 1.00954 1.00460 1.20967 0.81899 0.94102 0.97874 1.44057 1.01419 1.85704 1.00114 1.20064 0.96520 1.35879 0.85665 0.86691 1.25006 0.95931 1.01471 0.98079 1.70155 1.06413 1.51647 1.26205 0.86560 0.79423 0.78388 0.83761 1.21200 1.21783 1.21150 1.20287 0.91987 0.91543 0.88973 0.93591 1.21711 0.97417 0.99423 0.96510 1.22590 0.97780 0.94524 1.05055 1.21407 0.97374 0.96533 0.99366 1.22135 0.96785 0.95681 1.02701 1.21501 0.96152 0.97249 0.96785 0.93739 1.21681 0.98668 0.96593 1.02210 0.95422 0.95387 0.92907 0.97407 0.88517 0.88315 0.98965 0.94095 0.94742 0.92985 0.95257 0.84594 0.94208 0.93582 0.86886 0.94832 0.94760 0.94354 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.91 37.16 0.37 -2.31 16 2 C -0.12 -2.79 5.57 -26.73 -0.15 -2.94 16 3 C 0.18 4.11 4.78 -4.04 -0.02 4.09 16 4 N -0.59 -13.53 1.71 -165.69 -0.28 -13.82 16 5 C -0.25 -6.13 5.43 -15.06 -0.08 -6.22 16 6 H 0.12 2.69 2.45 -52.48 -0.13 2.56 16 7 C -0.01 -0.22 5.33 -17.43 -0.09 -0.31 16 8 N -0.90 -23.53 7.38 55.49 0.41 -23.12 16 9 Si 0.89 20.66 29.56 -169.99 -5.03 15.64 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.18 3.65 2.70 -67.93 -0.18 3.47 16 14 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 15 C -0.11 -2.17 5.58 -26.73 -0.15 -2.32 16 16 C -0.16 -3.19 5.54 -26.73 -0.15 -3.34 16 17 C -0.11 -1.95 5.60 -26.74 -0.15 -2.10 16 18 C -0.14 -2.54 4.84 -26.73 -0.13 -2.67 16 19 C -0.10 -1.77 2.54 -90.62 -0.23 -2.00 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.13 -2.39 9.04 37.16 0.34 -2.06 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.10 2.50 5.92 -51.93 -0.31 2.19 16 27 H 0.10 2.57 5.98 -51.93 -0.31 2.26 16 28 H -0.01 -0.18 7.95 -51.93 -0.41 -0.59 16 29 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.14 3.05 3.82 -51.98 -0.20 2.85 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 2.41 4.48 -51.93 -0.23 2.18 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.41 7.50 -51.93 -0.39 1.02 16 LS Contribution 286.93 15.07 4.32 4.32 Total: -1.00 -24.40 286.93 -8.22 -32.63 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.02 Total: 3.05 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -0.63 Total: -18.70 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.13 Total: -36.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -24.40 -8.22 -32.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705003263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.055 kcal (2) G-P(sol) polarization free energy of solvation -24.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds