Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46783 * 2 1 4 4 N 1.46499 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99458 * 271.78987 * 4 3 2 6 6 H 1.08004 * 119.99955 * 198.07655 * 5 4 3 7 7 C 1.38816 * 120.00027 * 18.08778 * 5 4 3 8 8 N 1.31618 * 119.99855 * 350.60824 * 7 5 4 9 9 Si 1.86800 * 119.99930 * 170.61447 * 7 5 4 10 10 H 1.48500 * 109.47110 * 59.99713 * 9 7 5 11 11 H 1.48504 * 109.46901 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47034 * 299.99465 * 9 7 5 13 13 C 1.46496 * 120.00514 * 91.79432 * 4 3 2 14 14 H 1.08996 * 109.46714 * 352.28476 * 13 4 3 15 15 C 1.53002 * 109.47005 * 232.28768 * 13 4 3 16 16 C 1.52999 * 109.47360 * 299.99976 * 15 13 4 17 17 C 1.52997 * 109.46642 * 300.00106 * 16 15 13 18 18 C 1.52994 * 109.47425 * 60.00059 * 17 16 15 19 19 C 1.52997 * 109.47369 * 112.28840 * 13 4 3 20 20 H 1.08994 * 109.47302 * 180.02562 * 19 13 4 21 21 C 1.53002 * 109.46998 * 299.99932 * 19 13 4 22 22 H 1.08998 * 109.46871 * 60.00359 * 1 2 3 23 23 H 1.09002 * 109.46485 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47453 * 300.00357 * 1 2 3 25 25 H 1.08991 * 109.47035 * 239.99973 * 2 1 3 26 26 H 1.08999 * 109.46983 * 119.99097 * 2 1 3 27 27 H 1.09000 * 109.47771 * 59.99719 * 3 2 1 28 28 H 1.09007 * 109.47057 * 299.99803 * 3 2 1 29 29 H 0.96996 * 119.99549 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47036 * 179.97438 * 15 13 4 31 31 H 1.09006 * 109.47030 * 59.99859 * 15 13 4 32 32 H 1.08992 * 109.47041 * 179.97438 * 16 15 13 33 33 H 1.08994 * 109.46863 * 59.99819 * 16 15 13 34 34 H 1.09004 * 109.47406 * 299.99477 * 17 16 15 35 35 H 1.09004 * 109.47015 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47607 * 59.99968 * 18 17 16 37 37 H 1.09006 * 109.47125 * 179.97438 * 18 17 16 38 38 H 1.09006 * 109.47030 * 179.97438 * 21 19 13 39 39 H 1.08998 * 109.47010 * 299.99874 * 21 19 13 40 40 H 1.09006 * 109.46958 * 60.00391 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4054 1.1845 6 1 5.2302 1.6948 1.2164 7 6 3.5479 0.9955 2.3449 8 7 2.2434 0.8206 2.3484 9 14 4.5351 0.6924 3.9015 10 1 5.2297 1.9435 4.2986 11 1 3.6214 0.2665 4.9920 12 1 5.5387 -0.3731 3.6515 13 6 4.2371 1.4826 -1.2689 14 1 3.5365 1.3705 -2.0964 15 6 5.2563 0.3420 -1.3056 16 6 6.2396 0.4991 -0.1440 17 6 6.9682 1.8385 -0.2704 18 6 5.9491 2.9790 -0.2337 19 6 4.9657 2.8219 -1.3953 20 1 5.5100 2.8518 -2.3391 21 6 3.9465 3.9624 -1.3586 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.6767 1.9565 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 1.7946 0.5345 3.1593 30 1 5.8006 0.3715 -2.2495 31 1 4.7371 -0.6122 -1.2156 32 1 6.9653 -0.3136 -0.1700 33 1 5.6949 0.4694 0.7996 34 1 7.5130 1.8682 -1.2141 35 1 7.6691 1.9503 0.5568 36 1 5.4044 2.9494 0.7100 37 1 6.4683 3.9333 -0.3233 38 1 4.4657 4.9167 -1.4481 39 1 3.2460 3.8505 -2.1861 40 1 3.4019 3.9328 -0.4148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705003263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = 29.721417 kcal Electronic energy + Delta-G solvation = -17620.771874 eV Core-core repulsion = 15243.636058 eV Total energy + Delta-G solvation = -2377.135816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64806 -36.53280 -33.68265 -33.14386 -32.54657 -30.35898 -27.39802 -27.00775 -24.46702 -22.64991 -21.90449 -21.73513 -20.21585 -18.62823 -16.39249 -16.19104 -15.54626 -15.43562 -15.03409 -14.65165 -14.58823 -14.08214 -13.81803 -13.52527 -13.03934 -12.80539 -12.77527 -12.59421 -12.43784 -12.34000 -12.26756 -12.00601 -11.89215 -11.76351 -11.62301 -11.42402 -11.15295 -10.74504 -10.58508 -10.24694 -9.64284 -8.38768 -7.50529 -4.91860 1.52032 1.55747 1.57665 2.63839 3.47695 3.77525 4.08355 4.18374 4.28503 4.56574 4.60623 4.62923 4.71097 4.75951 4.87784 4.92995 4.95683 4.96500 5.02005 5.09859 5.15958 5.19724 5.25640 5.31473 5.31764 5.48152 5.58451 5.62399 5.67432 5.67961 5.69031 5.87702 5.91236 6.05412 6.13900 6.37915 6.65737 7.45378 8.17212 8.59314 9.42083 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.015457 C = 0.010797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.204760 B = 1811.022739 C = 2592.573147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.183 3.817 4 N -0.600 5.600 5 C -0.235 4.235 6 H 0.128 0.872 7 C -0.063 4.063 8 N -0.917 5.917 9 Si 0.933 3.067 10 H -0.283 1.283 11 H -0.306 1.306 12 H -0.285 1.285 13 C 0.173 3.827 14 H 0.046 0.954 15 C -0.108 4.108 16 C -0.163 4.163 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.093 4.093 20 H 0.068 0.932 21 C -0.128 4.128 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.006 0.994 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.001 0.999 29 H 0.235 0.765 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 2.275 -6.906 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C 0.058 3.942 4 N -0.321 5.321 5 C -0.364 4.364 6 H 0.144 0.856 7 C -0.256 4.256 8 N -0.567 5.567 9 Si 0.765 3.235 10 H -0.209 1.209 11 H -0.233 1.233 12 H -0.212 1.212 13 C 0.066 3.934 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.199 4.199 17 C -0.142 4.142 18 C -0.171 4.171 19 C -0.113 4.113 20 H 0.087 0.913 21 C -0.185 4.185 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.024 0.976 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.252 2.248 -6.775 8.309 hybrid contribution 0.151 -0.518 1.083 1.210 sum 4.403 1.730 -5.693 7.402 Atomic orbital electron populations 1.21496 0.96841 0.99835 1.00180 1.22175 0.94432 1.00065 0.98665 1.20771 0.82547 0.94173 0.96746 1.44210 1.01390 1.85571 1.00930 1.20454 0.96869 1.33150 0.85889 0.85552 1.25506 0.96638 1.03311 1.00164 1.70337 1.07093 1.53654 1.25634 0.85820 0.78098 0.78079 0.81510 1.20932 1.23330 1.21213 1.20496 0.92249 0.93129 0.87503 0.93535 1.21659 0.97225 0.97995 0.97809 1.22447 0.97924 0.96327 1.03232 1.21380 0.97134 0.94765 1.00952 1.22025 0.96886 0.97137 1.01036 1.21460 0.96150 0.95921 0.97798 0.91338 1.21604 0.98627 0.97533 1.00782 0.93525 0.93934 0.94092 0.97552 0.91683 0.91241 0.98043 0.95452 0.92035 0.94923 0.94047 0.87834 0.91957 0.92735 0.90088 0.92889 0.92750 0.93564 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.91 71.99 0.71 -4.19 16 2 C -0.11 -5.22 5.57 30.60 0.17 -5.05 16 3 C 0.18 8.61 4.78 86.38 0.41 9.02 16 4 N -0.60 -27.34 1.71 -678.11 -1.16 -28.50 16 5 C -0.23 -11.43 5.43 84.03 0.46 -10.98 16 6 H 0.13 5.85 2.45 -2.91 -0.01 5.84 16 7 C -0.06 -3.30 5.33 84.86 0.45 -2.84 16 8 N -0.92 -49.95 7.38 21.65 0.16 -49.79 16 9 Si 0.93 43.54 29.56 68.60 2.03 45.57 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.17 6.69 2.70 44.99 0.12 6.81 16 14 H 0.05 1.78 7.84 -2.39 -0.02 1.76 16 15 C -0.11 -3.95 5.58 30.59 0.17 -3.78 16 16 C -0.16 -5.99 5.54 30.59 0.17 -5.83 16 17 C -0.10 -3.37 5.60 30.59 0.17 -3.20 16 18 C -0.13 -4.60 4.84 30.59 0.15 -4.46 16 19 C -0.09 -3.14 2.54 -10.79 -0.03 -3.17 16 20 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 21 C -0.13 -4.27 9.04 71.98 0.65 -3.62 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.06 3.46 5.92 -2.39 -0.01 3.44 16 27 H 0.07 3.73 5.98 -2.39 -0.01 3.71 16 28 H 0.00 0.06 7.95 -2.38 -0.02 0.04 16 29 H 0.23 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 4.55 3.82 -2.43 -0.01 4.54 16 34 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 3.34 4.48 -2.39 -0.01 3.33 16 37 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.51 7.50 -2.38 -0.02 1.49 16 Total: -1.00 -52.47 286.93 5.62 -46.85 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.99 Total: 17.15 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.61 Total: -31.27 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -1.00 Total: -78.30 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -52.47 5.62 -46.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705003263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.574 kcal (2) G-P(sol) polarization free energy of solvation -52.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds