Wall clock time and date at job start Mon Mar 30 2020 03:48:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08994 * 109.47222 * 2 1
4 4 N 1.46899 * 109.47109 * 120.00436 * 2 1 3
5 5 C 1.46892 * 111.00032 * 274.99744 * 4 2 1
6 6 C 1.53003 * 109.47106 * 180.02562 * 5 4 2
7 7 C 1.53004 * 109.46953 * 179.97438 * 6 5 4
8 8 C 1.52998 * 109.46883 * 179.97438 * 7 6 5
9 9 C 1.50699 * 109.47126 * 180.02562 * 8 7 6
10 10 H 1.08003 * 119.99901 * 0.02562 * 9 8 7
11 11 C 1.37880 * 120.00080 * 180.02562 * 9 8 7
12 12 N 1.31509 * 120.00093 * 0.02562 * 11 9 8
13 13 Si 1.86809 * 119.99935 * 179.97438 * 11 9 8
14 14 H 1.48497 * 109.47200 * 0.02562 * 13 11 9
15 15 H 1.48504 * 109.46855 * 120.00259 * 13 11 9
16 16 H 1.48500 * 109.47152 * 240.00018 * 13 11 9
17 17 C 1.53006 * 109.46568 * 240.00370 * 2 1 3
18 18 C 1.53001 * 115.56089 * 274.30805 * 17 2 1
19 19 C 1.53000 * 117.49776 * 60.00099 * 17 2 1
20 20 C 1.52997 * 117.49537 * 128.62554 * 17 2 1
21 21 H 1.09010 * 109.46434 * 299.99728 * 1 2 3
22 22 H 1.08991 * 109.47137 * 59.99154 * 1 2 3
23 23 H 1.08994 * 109.47222 * 179.97438 * 1 2 3
24 24 H 1.00902 * 110.99929 * 151.04465 * 4 2 1
25 25 H 1.09010 * 109.47232 * 300.00238 * 5 4 2
26 26 H 1.09000 * 109.47702 * 59.99978 * 5 4 2
27 27 H 1.08999 * 109.46674 * 299.99732 * 6 5 4
28 28 H 1.09002 * 109.47281 * 60.00071 * 6 5 4
29 29 H 1.08993 * 109.47305 * 299.99948 * 7 6 5
30 30 H 1.09002 * 109.46893 * 60.00049 * 7 6 5
31 31 H 1.09000 * 109.47721 * 300.00058 * 8 7 6
32 32 H 1.09002 * 109.47045 * 60.00474 * 8 7 6
33 33 H 0.97004 * 120.00419 * 180.02562 * 12 11 9
34 34 H 1.08997 * 109.47035 * 180.10904 * 18 17 2
35 35 H 1.08997 * 109.47400 * 300.11057 * 18 17 2
36 36 H 1.09002 * 109.46665 * 60.10796 * 18 17 2
37 37 H 1.08990 * 117.49990 * 359.97438 * 19 17 2
38 38 H 1.09004 * 117.49237 * 214.97568 * 19 17 2
39 39 H 1.08999 * 117.49685 * 145.02116 * 20 17 2
40 40 H 1.08999 * 117.52022 * 359.97438 * 20 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6926 1.1994
5 6 2.0826 0.2224 2.3468
6 6 2.5963 -0.5332 3.5741
7 6 2.6624 0.4200 4.7691
8 6 3.1756 -0.3357 5.9964
9 6 3.2400 0.6029 7.1736
10 1 2.9442 1.6352 7.0580
11 6 3.6768 0.1439 8.3982
12 7 4.0375 -1.1129 8.5389
13 14 3.7574 1.3077 9.8573
14 1 3.3009 2.6577 9.4396
15 1 2.8786 0.8024 10.9426
16 1 5.1560 1.3880 10.3498
17 6 2.0399 -0.7212 -1.2494
18 6 2.1622 -2.2417 -1.1302
19 6 1.6356 -0.1493 -2.6097
20 6 3.0741 0.0052 -2.1117
21 1 -0.3632 0.5139 0.8901
22 1 -0.3633 0.5139 -0.8898
23 1 -0.3633 -1.0276 -0.0005
24 1 2.9174 -1.1206 1.0286
25 1 2.7590 1.0461 2.1182
26 1 1.0872 0.6162 2.5526
27 1 1.9202 -1.3570 3.8028
28 1 3.5918 -0.9266 3.3681
29 1 3.3387 1.2435 4.5400
30 1 1.6671 0.8138 4.9752
31 1 2.4990 -1.1591 6.2254
32 1 4.1708 -0.7298 5.7906
33 1 4.3444 -1.4359 9.4005
34 1 2.5334 -2.6510 -2.0697
35 1 2.8562 -2.4886 -0.3269
36 1 1.1839 -2.6685 -0.9092
37 1 1.0060 0.7403 -2.6145
38 1 1.4566 -0.8564 -3.4197
39 1 3.8414 -0.6001 -2.5943
40 1 3.3911 0.9971 -1.7896
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000706954530.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:48:57
Heat of formation + Delta-G solvation = -9.186040 kcal
Electronic energy + Delta-G solvation = -15272.414202 eV
Core-core repulsion = 12893.591232 eV
Total energy + Delta-G solvation = -2378.822970 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.17090 -36.11371 -34.02258 -32.22087 -30.01680 -28.72486 -27.50164 -24.58626
-22.85978 -22.43282 -21.19522 -20.05479 -18.70254 -16.47859 -16.09572 -15.36441
-15.12287 -14.43175 -14.17049 -14.07284 -13.25650 -12.98762 -12.51667 -12.43375
-12.41850 -12.09378 -12.02246 -11.61043 -11.50543 -11.28570 -11.04038 -10.81514
-10.51722 -10.45532 -10.38520 -10.30436 -9.81305 -9.59196 -9.21565 -8.95496
-8.32346 -8.29434 -5.95352 -3.97377 3.33463 3.40646 3.45104 3.52533
4.13462 4.47945 4.50058 4.67999 4.73663 4.92518 5.23470 5.36860
5.40078 5.40976 5.48111 5.59611 5.64316 5.64573 5.67711 5.78951
5.86869 5.90717 5.95275 6.00994 6.13994 6.20207 6.30697 6.35045
6.56830 6.87409 7.01472 7.12828 7.29509 7.50947 7.74460 7.90518
8.06135 8.49142 9.10426 9.66373 11.16042
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.061975 B = 0.003713 C = 0.003657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 451.690281 B = 7539.938151 C = 7655.631639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.120 3.880
3 H 0.040 0.960
4 N -0.683 5.683
5 C 0.059 3.941
6 C -0.115 4.115
7 C -0.109 4.109
8 C 0.020 3.980
9 C -0.519 4.519
10 H 0.054 0.946
11 C 0.055 3.945
12 N -0.896 5.896
13 Si 0.891 3.109
14 H -0.273 1.273
15 H -0.284 1.284
16 H -0.284 1.284
17 C -0.127 4.127
18 C -0.106 4.106
19 C -0.171 4.171
20 C -0.181 4.181
21 H 0.054 0.946
22 H 0.051 0.949
23 H 0.062 0.938
24 H 0.341 0.659
25 H 0.024 0.976
26 H 0.068 0.932
27 H 0.065 0.935
28 H 0.053 0.947
29 H 0.044 0.956
30 H 0.046 0.954
31 H 0.016 0.984
32 H 0.014 0.986
33 H 0.259 0.741
34 H 0.049 0.951
35 H 0.065 0.935
36 H 0.064 0.936
37 H 0.093 0.907
38 H 0.093 0.907
39 H 0.093 0.907
40 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.354 0.865 -21.062 21.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.010 3.990
3 H 0.058 0.942
4 N -0.315 5.315
5 C -0.070 4.070
6 C -0.153 4.153
7 C -0.147 4.147
8 C -0.017 4.017
9 C -0.557 4.557
10 H 0.073 0.927
11 C -0.146 4.146
12 N -0.536 5.536
13 Si 0.719 3.281
14 H -0.198 1.198
15 H -0.210 1.210
16 H -0.211 1.211
17 C -0.128 4.128
18 C -0.163 4.163
19 C -0.208 4.208
20 C -0.218 4.218
21 H 0.073 0.927
22 H 0.070 0.930
23 H 0.081 0.919
24 H 0.160 0.840
25 H 0.042 0.958
26 H 0.087 0.913
27 H 0.083 0.917
28 H 0.072 0.928
29 H 0.063 0.937
30 H 0.065 0.935
31 H 0.034 0.966
32 H 0.033 0.967
33 H 0.069 0.931
34 H 0.068 0.932
35 H 0.084 0.916
36 H 0.082 0.918
37 H 0.111 0.889
38 H 0.112 0.888
39 H 0.112 0.888
40 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -4.909 0.500 -20.759 21.338
hybrid contribution 0.902 1.176 0.636 1.613
sum -4.006 1.676 -20.124 20.587
Atomic orbital electron populations
1.21754 0.94427 1.02365 1.00864 1.21002 0.95755 0.94606 0.87602
0.94165 1.60644 1.33425 1.33503 1.03918 1.22120 1.00435 0.93714
0.90705 1.21628 1.00510 0.99254 0.93871 1.21588 1.00171 0.97724
0.95218 1.19098 0.96190 0.95436 0.90933 1.21337 1.43242 0.96482
0.94673 0.92738 1.25039 0.95552 0.95089 0.98901 1.69979 1.44891
1.14404 1.24298 0.86559 0.77602 0.81210 0.82768 1.19774 1.21027
1.21051 1.21685 1.03404 0.95914 0.91759 1.21192 1.02534 0.91423
1.01189 1.22989 0.97899 1.03039 0.96918 1.23141 0.92594 1.01821
1.04203 0.92680 0.92967 0.91940 0.84039 0.95762 0.91343 0.91661
0.92829 0.93740 0.93485 0.96597 0.96740 0.93123 0.93172 0.91609
0.91751 0.88891 0.88838 0.88843 0.89045
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.46 9.26 37.16 0.34 -1.11 16
2 C 0.12 1.34 2.71 -67.71 -0.18 1.16 16
3 H 0.04 0.47 7.56 -51.93 -0.39 0.08 16
4 N -0.68 -8.77 5.77 -106.72 -0.62 -9.39 16
5 C 0.06 0.87 5.48 -3.83 -0.02 0.84 16
6 C -0.11 -2.01 5.47 -26.73 -0.15 -2.16 16
7 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16
8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16
9 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16
10 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16
11 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16
12 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16
13 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16
14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16
15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
17 C -0.13 -1.22 1.81 -154.51 -0.28 -1.50 16
18 C -0.11 -0.99 9.15 37.16 0.34 -0.65 16
19 C -0.17 -1.42 9.45 -26.73 -0.25 -1.67 16
20 C -0.18 -1.58 9.89 -26.73 -0.26 -1.85 16
21 H 0.05 0.62 7.45 -51.92 -0.39 0.24 16
22 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16
23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
24 H 0.34 4.21 6.98 -39.29 -0.27 3.94 16
25 H 0.02 0.35 8.06 -51.92 -0.42 -0.06 16
26 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16
27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
34 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16
35 H 0.07 0.64 6.76 -51.93 -0.35 0.29 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.09 0.74 7.61 -51.93 -0.39 0.35 16
38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
40 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16
LS Contribution 320.59 15.07 4.83 4.83
Total: -1.00 -30.09 320.59 -8.81 -38.90
By element:
Atomic # 1 Polarization: 5.91 SS G_CDS: -7.59 Total: -1.68 kcal
Atomic # 6 Polarization: -21.75 SS G_CDS: -1.15 Total: -22.90 kcal
Atomic # 7 Polarization: -36.31 SS G_CDS: 0.12 Total: -36.19 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -30.09 -8.81 -38.90 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706954530.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.717 kcal
(2) G-P(sol) polarization free energy of solvation -30.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds