Wall clock time and date at job start Mon Mar 30 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47222 * 2 1 4 4 N 1.46899 * 109.47109 * 120.00436 * 2 1 3 5 5 C 1.46892 * 111.00032 * 274.99744 * 4 2 1 6 6 C 1.53003 * 109.47106 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46953 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46883 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47126 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99901 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00080 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00093 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99935 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47200 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46855 * 120.00259 * 13 11 9 16 16 H 1.48500 * 109.47152 * 240.00018 * 13 11 9 17 17 C 1.53006 * 109.46568 * 240.00370 * 2 1 3 18 18 C 1.53001 * 115.56089 * 274.30805 * 17 2 1 19 19 C 1.53000 * 117.49776 * 60.00099 * 17 2 1 20 20 C 1.52997 * 117.49537 * 128.62554 * 17 2 1 21 21 H 1.09010 * 109.46434 * 299.99728 * 1 2 3 22 22 H 1.08991 * 109.47137 * 59.99154 * 1 2 3 23 23 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.00902 * 110.99929 * 151.04465 * 4 2 1 25 25 H 1.09010 * 109.47232 * 300.00238 * 5 4 2 26 26 H 1.09000 * 109.47702 * 59.99978 * 5 4 2 27 27 H 1.08999 * 109.46674 * 299.99732 * 6 5 4 28 28 H 1.09002 * 109.47281 * 60.00071 * 6 5 4 29 29 H 1.08993 * 109.47305 * 299.99948 * 7 6 5 30 30 H 1.09002 * 109.46893 * 60.00049 * 7 6 5 31 31 H 1.09000 * 109.47721 * 300.00058 * 8 7 6 32 32 H 1.09002 * 109.47045 * 60.00474 * 8 7 6 33 33 H 0.97004 * 120.00419 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47035 * 180.10904 * 18 17 2 35 35 H 1.08997 * 109.47400 * 300.11057 * 18 17 2 36 36 H 1.09002 * 109.46665 * 60.10796 * 18 17 2 37 37 H 1.08990 * 117.49990 * 359.97438 * 19 17 2 38 38 H 1.09004 * 117.49237 * 214.97568 * 19 17 2 39 39 H 1.08999 * 117.49685 * 145.02116 * 20 17 2 40 40 H 1.08999 * 117.52022 * 359.97438 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2224 2.3468 6 6 2.5963 -0.5332 3.5741 7 6 2.6624 0.4200 4.7691 8 6 3.1756 -0.3357 5.9964 9 6 3.2400 0.6029 7.1736 10 1 2.9442 1.6352 7.0580 11 6 3.6768 0.1439 8.3982 12 7 4.0375 -1.1129 8.5389 13 14 3.7574 1.3077 9.8573 14 1 3.3009 2.6577 9.4396 15 1 2.8786 0.8024 10.9426 16 1 5.1560 1.3880 10.3498 17 6 2.0399 -0.7212 -1.2494 18 6 2.1622 -2.2417 -1.1302 19 6 1.6356 -0.1493 -2.6097 20 6 3.0741 0.0052 -2.1117 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 2.9174 -1.1206 1.0286 25 1 2.7590 1.0461 2.1182 26 1 1.0872 0.6162 2.5526 27 1 1.9202 -1.3570 3.8028 28 1 3.5918 -0.9266 3.3681 29 1 3.3387 1.2435 4.5400 30 1 1.6671 0.8138 4.9752 31 1 2.4990 -1.1591 6.2254 32 1 4.1708 -0.7298 5.7906 33 1 4.3444 -1.4359 9.4005 34 1 2.5334 -2.6510 -2.0697 35 1 2.8562 -2.4886 -0.3269 36 1 1.1839 -2.6685 -0.9092 37 1 1.0060 0.7403 -2.6145 38 1 1.4566 -0.8564 -3.4197 39 1 3.8414 -0.6001 -2.5943 40 1 3.3911 0.9971 -1.7896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706954530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:57 Heat of formation + Delta-G solvation = -9.186040 kcal Electronic energy + Delta-G solvation = -15272.414202 eV Core-core repulsion = 12893.591232 eV Total energy + Delta-G solvation = -2378.822970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.17090 -36.11371 -34.02258 -32.22087 -30.01680 -28.72486 -27.50164 -24.58626 -22.85978 -22.43282 -21.19522 -20.05479 -18.70254 -16.47859 -16.09572 -15.36441 -15.12287 -14.43175 -14.17049 -14.07284 -13.25650 -12.98762 -12.51667 -12.43375 -12.41850 -12.09378 -12.02246 -11.61043 -11.50543 -11.28570 -11.04038 -10.81514 -10.51722 -10.45532 -10.38520 -10.30436 -9.81305 -9.59196 -9.21565 -8.95496 -8.32346 -8.29434 -5.95352 -3.97377 3.33463 3.40646 3.45104 3.52533 4.13462 4.47945 4.50058 4.67999 4.73663 4.92518 5.23470 5.36860 5.40078 5.40976 5.48111 5.59611 5.64316 5.64573 5.67711 5.78951 5.86869 5.90717 5.95275 6.00994 6.13994 6.20207 6.30697 6.35045 6.56830 6.87409 7.01472 7.12828 7.29509 7.50947 7.74460 7.90518 8.06135 8.49142 9.10426 9.66373 11.16042 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.061975 B = 0.003713 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.690281 B = 7539.938151 C = 7655.631639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.120 3.880 3 H 0.040 0.960 4 N -0.683 5.683 5 C 0.059 3.941 6 C -0.115 4.115 7 C -0.109 4.109 8 C 0.020 3.980 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.127 4.127 18 C -0.106 4.106 19 C -0.171 4.171 20 C -0.181 4.181 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.341 0.659 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 0.865 -21.062 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.010 3.990 3 H 0.058 0.942 4 N -0.315 5.315 5 C -0.070 4.070 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.128 4.128 18 C -0.163 4.163 19 C -0.208 4.208 20 C -0.218 4.218 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.160 0.840 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.909 0.500 -20.759 21.338 hybrid contribution 0.902 1.176 0.636 1.613 sum -4.006 1.676 -20.124 20.587 Atomic orbital electron populations 1.21754 0.94427 1.02365 1.00864 1.21002 0.95755 0.94606 0.87602 0.94165 1.60644 1.33425 1.33503 1.03918 1.22120 1.00435 0.93714 0.90705 1.21628 1.00510 0.99254 0.93871 1.21588 1.00171 0.97724 0.95218 1.19098 0.96190 0.95436 0.90933 1.21337 1.43242 0.96482 0.94673 0.92738 1.25039 0.95552 0.95089 0.98901 1.69979 1.44891 1.14404 1.24298 0.86559 0.77602 0.81210 0.82768 1.19774 1.21027 1.21051 1.21685 1.03404 0.95914 0.91759 1.21192 1.02534 0.91423 1.01189 1.22989 0.97899 1.03039 0.96918 1.23141 0.92594 1.01821 1.04203 0.92680 0.92967 0.91940 0.84039 0.95762 0.91343 0.91661 0.92829 0.93740 0.93485 0.96597 0.96740 0.93123 0.93172 0.91609 0.91751 0.88891 0.88838 0.88843 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.26 37.16 0.34 -1.11 16 2 C 0.12 1.34 2.71 -67.71 -0.18 1.16 16 3 H 0.04 0.47 7.56 -51.93 -0.39 0.08 16 4 N -0.68 -8.77 5.77 -106.72 -0.62 -9.39 16 5 C 0.06 0.87 5.48 -3.83 -0.02 0.84 16 6 C -0.11 -2.01 5.47 -26.73 -0.15 -2.16 16 7 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 9 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 10 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 13 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C -0.13 -1.22 1.81 -154.51 -0.28 -1.50 16 18 C -0.11 -0.99 9.15 37.16 0.34 -0.65 16 19 C -0.17 -1.42 9.45 -26.73 -0.25 -1.67 16 20 C -0.18 -1.58 9.89 -26.73 -0.26 -1.85 16 21 H 0.05 0.62 7.45 -51.92 -0.39 0.24 16 22 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.34 4.21 6.98 -39.29 -0.27 3.94 16 25 H 0.02 0.35 8.06 -51.92 -0.42 -0.06 16 26 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 35 H 0.07 0.64 6.76 -51.93 -0.35 0.29 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.74 7.61 -51.93 -0.39 0.35 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -30.09 320.59 -8.81 -38.90 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.59 Total: -1.68 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.15 Total: -22.90 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.12 Total: -36.19 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.09 -8.81 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706954530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.717 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds