Wall clock time and date at job start Mon Mar 30 2020 03:48:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08994 * 109.47222 * 2 1
4 4 N 1.46899 * 109.47109 * 120.00436 * 2 1 3
5 5 C 1.46892 * 111.00032 * 274.99744 * 4 2 1
6 6 C 1.53003 * 109.47106 * 180.02562 * 5 4 2
7 7 C 1.53004 * 109.46953 * 179.97438 * 6 5 4
8 8 C 1.52998 * 109.46883 * 179.97438 * 7 6 5
9 9 C 1.50699 * 109.47126 * 180.02562 * 8 7 6
10 10 H 1.08003 * 119.99901 * 0.02562 * 9 8 7
11 11 C 1.37880 * 120.00080 * 180.02562 * 9 8 7
12 12 N 1.31509 * 120.00093 * 0.02562 * 11 9 8
13 13 Si 1.86809 * 119.99935 * 179.97438 * 11 9 8
14 14 H 1.48497 * 109.47200 * 0.02562 * 13 11 9
15 15 H 1.48504 * 109.46855 * 120.00259 * 13 11 9
16 16 H 1.48500 * 109.47152 * 240.00018 * 13 11 9
17 17 C 1.53006 * 109.46568 * 240.00370 * 2 1 3
18 18 C 1.53001 * 115.56089 * 274.30805 * 17 2 1
19 19 C 1.53000 * 117.49776 * 60.00099 * 17 2 1
20 20 C 1.52997 * 117.49537 * 128.62554 * 17 2 1
21 21 H 1.09010 * 109.46434 * 299.99728 * 1 2 3
22 22 H 1.08991 * 109.47137 * 59.99154 * 1 2 3
23 23 H 1.08994 * 109.47222 * 179.97438 * 1 2 3
24 24 H 1.00902 * 110.99929 * 151.04465 * 4 2 1
25 25 H 1.09010 * 109.47232 * 300.00238 * 5 4 2
26 26 H 1.09000 * 109.47702 * 59.99978 * 5 4 2
27 27 H 1.08999 * 109.46674 * 299.99732 * 6 5 4
28 28 H 1.09002 * 109.47281 * 60.00071 * 6 5 4
29 29 H 1.08993 * 109.47305 * 299.99948 * 7 6 5
30 30 H 1.09002 * 109.46893 * 60.00049 * 7 6 5
31 31 H 1.09000 * 109.47721 * 300.00058 * 8 7 6
32 32 H 1.09002 * 109.47045 * 60.00474 * 8 7 6
33 33 H 0.97004 * 120.00419 * 180.02562 * 12 11 9
34 34 H 1.08997 * 109.47035 * 180.10904 * 18 17 2
35 35 H 1.08997 * 109.47400 * 300.11057 * 18 17 2
36 36 H 1.09002 * 109.46665 * 60.10796 * 18 17 2
37 37 H 1.08990 * 117.49990 * 359.97438 * 19 17 2
38 38 H 1.09004 * 117.49237 * 214.97568 * 19 17 2
39 39 H 1.08999 * 117.49685 * 145.02116 * 20 17 2
40 40 H 1.08999 * 117.52022 * 359.97438 * 20 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6926 1.1994
5 6 2.0826 0.2224 2.3468
6 6 2.5963 -0.5332 3.5741
7 6 2.6624 0.4200 4.7691
8 6 3.1756 -0.3357 5.9964
9 6 3.2400 0.6029 7.1736
10 1 2.9442 1.6352 7.0580
11 6 3.6768 0.1439 8.3982
12 7 4.0375 -1.1129 8.5389
13 14 3.7574 1.3077 9.8573
14 1 3.3009 2.6577 9.4396
15 1 2.8786 0.8024 10.9426
16 1 5.1560 1.3880 10.3498
17 6 2.0399 -0.7212 -1.2494
18 6 2.1622 -2.2417 -1.1302
19 6 1.6356 -0.1493 -2.6097
20 6 3.0741 0.0052 -2.1117
21 1 -0.3632 0.5139 0.8901
22 1 -0.3633 0.5139 -0.8898
23 1 -0.3633 -1.0276 -0.0005
24 1 2.9174 -1.1206 1.0286
25 1 2.7590 1.0461 2.1182
26 1 1.0872 0.6162 2.5526
27 1 1.9202 -1.3570 3.8028
28 1 3.5918 -0.9266 3.3681
29 1 3.3387 1.2435 4.5400
30 1 1.6671 0.8138 4.9752
31 1 2.4990 -1.1591 6.2254
32 1 4.1708 -0.7298 5.7906
33 1 4.3444 -1.4359 9.4005
34 1 2.5334 -2.6510 -2.0697
35 1 2.8562 -2.4886 -0.3269
36 1 1.1839 -2.6685 -0.9092
37 1 1.0060 0.7403 -2.6145
38 1 1.4566 -0.8564 -3.4197
39 1 3.8414 -0.6001 -2.5943
40 1 3.3911 0.9971 -1.7896
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000706954530.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:48:57
Heat of formation + Delta-G solvation = -25.954239 kcal
Electronic energy + Delta-G solvation = -15273.141326 eV
Core-core repulsion = 12893.591232 eV
Total energy + Delta-G solvation = -2379.550094 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.97618 -37.38221 -35.70931 -34.04309 -31.36233 -29.53935 -28.98158 -26.26650
-24.05543 -23.14591 -22.54677 -21.80862 -19.54691 -18.42984 -17.32811 -16.57347
-16.35555 -16.17157 -15.35822 -15.00717 -14.53503 -14.21812 -14.10990 -13.67085
-13.41974 -13.23810 -13.07127 -12.99093 -12.84514 -12.64214 -12.28664 -12.26628
-12.14901 -12.11359 -11.57907 -11.35824 -11.31755 -11.17813 -10.89916 -10.56189
-10.51421 -9.34569 -8.20116 -6.31668 1.39408 1.39989 1.53566 2.40776
2.82388 3.12514 3.17077 3.71497 3.94740 4.02543 4.13441 4.14153
4.23957 4.41256 4.53873 4.60639 4.65484 4.74768 4.79870 4.89998
4.92769 4.93934 5.01298 5.03417 5.08200 5.20370 5.24527 5.27390
5.28073 5.36019 5.39801 5.49487 5.55142 5.77753 5.86716 6.16478
6.25846 6.49666 6.85985 7.37676 8.92000
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.061975 B = 0.003713 C = 0.003657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 451.690281 B = 7539.938151 C = 7655.631639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.120 3.880
3 H 0.037 0.963
4 N -0.686 5.686
5 C 0.071 3.929
6 C -0.104 4.104
7 C -0.097 4.097
8 C 0.023 3.977
9 C -0.545 4.545
10 H 0.059 0.941
11 C -0.003 4.003
12 N -0.934 5.934
13 Si 0.967 3.033
14 H -0.262 1.262
15 H -0.277 1.277
16 H -0.277 1.277
17 C -0.138 4.138
18 C -0.104 4.104
19 C -0.161 4.161
20 C -0.180 4.180
21 H 0.045 0.955
22 H 0.068 0.932
23 H 0.056 0.944
24 H 0.343 0.657
25 H 0.029 0.971
26 H 0.068 0.932
27 H 0.055 0.945
28 H 0.052 0.948
29 H 0.049 0.951
30 H 0.050 0.950
31 H -0.011 1.011
32 H -0.010 1.010
33 H 0.264 0.736
34 H 0.062 0.938
35 H 0.057 0.943
36 H 0.057 0.943
37 H 0.097 0.903
38 H 0.104 0.896
39 H 0.101 0.899
40 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.630 2.025 -21.973 22.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.011 3.989
3 H 0.055 0.945
4 N -0.319 5.319
5 C -0.058 4.058
6 C -0.142 4.142
7 C -0.135 4.135
8 C -0.015 4.015
9 C -0.583 4.583
10 H 0.078 0.922
11 C -0.201 4.201
12 N -0.575 5.575
13 Si 0.791 3.209
14 H -0.186 1.186
15 H -0.203 1.203
16 H -0.203 1.203
17 C -0.139 4.139
18 C -0.161 4.161
19 C -0.198 4.198
20 C -0.217 4.217
21 H 0.064 0.936
22 H 0.087 0.913
23 H 0.075 0.925
24 H 0.163 0.837
25 H 0.047 0.953
26 H 0.087 0.913
27 H 0.074 0.926
28 H 0.071 0.929
29 H 0.068 0.932
30 H 0.068 0.932
31 H 0.008 0.992
32 H 0.008 0.992
33 H 0.072 0.928
34 H 0.081 0.919
35 H 0.076 0.924
36 H 0.076 0.924
37 H 0.116 0.884
38 H 0.123 0.877
39 H 0.119 0.881
40 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.190 1.664 -21.691 22.365
hybrid contribution 0.993 0.773 0.893 1.543
sum -4.198 2.437 -20.797 21.356
Atomic orbital electron populations
1.21739 0.94097 1.02094 1.01226 1.21035 0.95976 0.94426 0.87503
0.94498 1.60605 1.33706 1.33311 1.04237 1.21879 1.00270 0.93522
0.90105 1.21449 1.00495 0.98367 0.93871 1.21399 0.99968 0.97851
0.94294 1.19026 0.94395 0.94938 0.93096 1.21775 1.43541 0.97080
0.95864 0.92239 1.26032 0.94857 0.96908 1.02287 1.70111 1.45511
1.16466 1.25386 0.85371 0.77927 0.79084 0.78488 1.18557 1.20284
1.20251 1.21620 1.04692 0.95884 0.91692 1.21162 1.01999 0.91381
1.01568 1.23066 0.97499 1.03169 0.96085 1.23190 0.93059 1.01659
1.03823 0.93635 0.91303 0.92487 0.83731 0.95324 0.91307 0.92609
0.92904 0.93213 0.93158 0.99232 0.99183 0.92757 0.91910 0.92409
0.92407 0.88411 0.87721 0.88085 0.89268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.67 9.26 71.98 0.67 -2.00 16
2 C 0.12 2.51 2.71 44.92 0.12 2.63 16
3 H 0.04 0.81 7.56 -2.39 -0.02 0.79 16
4 N -0.69 -17.00 5.77 -491.56 -2.84 -19.83 16
5 C 0.07 2.02 5.48 86.31 0.47 2.50 16
6 C -0.10 -3.64 5.47 30.60 0.17 -3.47 16
7 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16
8 C 0.02 1.24 4.97 29.85 0.15 1.39 16
9 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16
10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16
11 C 0.00 -0.20 5.46 84.66 0.46 0.26 16
12 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16
13 Si 0.97 45.12 29.54 68.60 2.03 47.15 16
14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16
15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
17 C -0.14 -2.42 1.81 -52.18 -0.09 -2.51 16
18 C -0.10 -1.79 9.15 71.98 0.66 -1.13 16
19 C -0.16 -2.29 9.45 30.60 0.29 -2.00 16
20 C -0.18 -2.80 9.89 30.60 0.30 -2.50 16
21 H 0.04 0.98 7.45 -2.38 -0.02 0.96 16
22 H 0.07 1.12 7.29 -2.39 -0.02 1.11 16
23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
24 H 0.34 8.20 6.98 -89.69 -0.63 7.57 16
25 H 0.03 0.79 8.06 -2.38 -0.02 0.77 16
26 H 0.07 1.96 7.44 -2.39 -0.02 1.94 16
27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
29 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16
30 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16
31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16
32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16
33 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16
34 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16
35 H 0.06 1.07 6.76 -2.39 -0.02 1.06 16
36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
37 H 0.10 1.30 7.61 -2.39 -0.02 1.29 16
38 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16
39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16
Total: -1.00 -64.06 320.59 3.41 -60.65
By element:
Atomic # 1 Polarization: 12.27 SS G_CDS: 0.34 Total: 12.61 kcal
Atomic # 6 Polarization: -46.19 SS G_CDS: 3.59 Total: -42.60 kcal
Atomic # 7 Polarization: -75.26 SS G_CDS: -2.55 Total: -77.81 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -64.06 3.41 -60.65 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706954530.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.695 kcal
(2) G-P(sol) polarization free energy of solvation -64.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.650 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds