Wall clock time and date at job start Mon Mar 30 2020 03:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47222 * 2 1 4 4 N 1.46899 * 109.47109 * 120.00436 * 2 1 3 5 5 C 1.46892 * 111.00032 * 274.99744 * 4 2 1 6 6 C 1.53003 * 109.47106 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46953 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46883 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47126 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99901 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00080 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00093 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99935 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47200 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46855 * 120.00259 * 13 11 9 16 16 H 1.48500 * 109.47152 * 240.00018 * 13 11 9 17 17 C 1.53006 * 109.46568 * 240.00370 * 2 1 3 18 18 C 1.53001 * 115.56089 * 274.30805 * 17 2 1 19 19 C 1.53000 * 117.49776 * 60.00099 * 17 2 1 20 20 C 1.52997 * 117.49537 * 128.62554 * 17 2 1 21 21 H 1.09010 * 109.46434 * 299.99728 * 1 2 3 22 22 H 1.08991 * 109.47137 * 59.99154 * 1 2 3 23 23 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.00902 * 110.99929 * 151.04465 * 4 2 1 25 25 H 1.09010 * 109.47232 * 300.00238 * 5 4 2 26 26 H 1.09000 * 109.47702 * 59.99978 * 5 4 2 27 27 H 1.08999 * 109.46674 * 299.99732 * 6 5 4 28 28 H 1.09002 * 109.47281 * 60.00071 * 6 5 4 29 29 H 1.08993 * 109.47305 * 299.99948 * 7 6 5 30 30 H 1.09002 * 109.46893 * 60.00049 * 7 6 5 31 31 H 1.09000 * 109.47721 * 300.00058 * 8 7 6 32 32 H 1.09002 * 109.47045 * 60.00474 * 8 7 6 33 33 H 0.97004 * 120.00419 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.47035 * 180.10904 * 18 17 2 35 35 H 1.08997 * 109.47400 * 300.11057 * 18 17 2 36 36 H 1.09002 * 109.46665 * 60.10796 * 18 17 2 37 37 H 1.08990 * 117.49990 * 359.97438 * 19 17 2 38 38 H 1.09004 * 117.49237 * 214.97568 * 19 17 2 39 39 H 1.08999 * 117.49685 * 145.02116 * 20 17 2 40 40 H 1.08999 * 117.52022 * 359.97438 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2224 2.3468 6 6 2.5963 -0.5332 3.5741 7 6 2.6624 0.4200 4.7691 8 6 3.1756 -0.3357 5.9964 9 6 3.2400 0.6029 7.1736 10 1 2.9442 1.6352 7.0580 11 6 3.6768 0.1439 8.3982 12 7 4.0375 -1.1129 8.5389 13 14 3.7574 1.3077 9.8573 14 1 3.3009 2.6577 9.4396 15 1 2.8786 0.8024 10.9426 16 1 5.1560 1.3880 10.3498 17 6 2.0399 -0.7212 -1.2494 18 6 2.1622 -2.2417 -1.1302 19 6 1.6356 -0.1493 -2.6097 20 6 3.0741 0.0052 -2.1117 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 2.9174 -1.1206 1.0286 25 1 2.7590 1.0461 2.1182 26 1 1.0872 0.6162 2.5526 27 1 1.9202 -1.3570 3.8028 28 1 3.5918 -0.9266 3.3681 29 1 3.3387 1.2435 4.5400 30 1 1.6671 0.8138 4.9752 31 1 2.4990 -1.1591 6.2254 32 1 4.1708 -0.7298 5.7906 33 1 4.3444 -1.4359 9.4005 34 1 2.5334 -2.6510 -2.0697 35 1 2.8562 -2.4886 -0.3269 36 1 1.1839 -2.6685 -0.9092 37 1 1.0060 0.7403 -2.6145 38 1 1.4566 -0.8564 -3.4197 39 1 3.8414 -0.6001 -2.5943 40 1 3.3911 0.9971 -1.7896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706954530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:57 Heat of formation + Delta-G solvation = -25.954239 kcal Electronic energy + Delta-G solvation = -15273.141326 eV Core-core repulsion = 12893.591232 eV Total energy + Delta-G solvation = -2379.550094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97618 -37.38221 -35.70931 -34.04309 -31.36233 -29.53935 -28.98158 -26.26650 -24.05543 -23.14591 -22.54677 -21.80862 -19.54691 -18.42984 -17.32811 -16.57347 -16.35555 -16.17157 -15.35822 -15.00717 -14.53503 -14.21812 -14.10990 -13.67085 -13.41974 -13.23810 -13.07127 -12.99093 -12.84514 -12.64214 -12.28664 -12.26628 -12.14901 -12.11359 -11.57907 -11.35824 -11.31755 -11.17813 -10.89916 -10.56189 -10.51421 -9.34569 -8.20116 -6.31668 1.39408 1.39989 1.53566 2.40776 2.82388 3.12514 3.17077 3.71497 3.94740 4.02543 4.13441 4.14153 4.23957 4.41256 4.53873 4.60639 4.65484 4.74768 4.79870 4.89998 4.92769 4.93934 5.01298 5.03417 5.08200 5.20370 5.24527 5.27390 5.28073 5.36019 5.39801 5.49487 5.55142 5.77753 5.86716 6.16478 6.25846 6.49666 6.85985 7.37676 8.92000 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.061975 B = 0.003713 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.690281 B = 7539.938151 C = 7655.631639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.120 3.880 3 H 0.037 0.963 4 N -0.686 5.686 5 C 0.071 3.929 6 C -0.104 4.104 7 C -0.097 4.097 8 C 0.023 3.977 9 C -0.545 4.545 10 H 0.059 0.941 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.138 4.138 18 C -0.104 4.104 19 C -0.161 4.161 20 C -0.180 4.180 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.343 0.657 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.050 0.950 31 H -0.011 1.011 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 2.025 -21.973 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.055 0.945 4 N -0.319 5.319 5 C -0.058 4.058 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.015 4.015 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.139 4.139 18 C -0.161 4.161 19 C -0.198 4.198 20 C -0.217 4.217 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.163 0.837 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.190 1.664 -21.691 22.365 hybrid contribution 0.993 0.773 0.893 1.543 sum -4.198 2.437 -20.797 21.356 Atomic orbital electron populations 1.21739 0.94097 1.02094 1.01226 1.21035 0.95976 0.94426 0.87503 0.94498 1.60605 1.33706 1.33311 1.04237 1.21879 1.00270 0.93522 0.90105 1.21449 1.00495 0.98367 0.93871 1.21399 0.99968 0.97851 0.94294 1.19026 0.94395 0.94938 0.93096 1.21775 1.43541 0.97080 0.95864 0.92239 1.26032 0.94857 0.96908 1.02287 1.70111 1.45511 1.16466 1.25386 0.85371 0.77927 0.79084 0.78488 1.18557 1.20284 1.20251 1.21620 1.04692 0.95884 0.91692 1.21162 1.01999 0.91381 1.01568 1.23066 0.97499 1.03169 0.96085 1.23190 0.93059 1.01659 1.03823 0.93635 0.91303 0.92487 0.83731 0.95324 0.91307 0.92609 0.92904 0.93213 0.93158 0.99232 0.99183 0.92757 0.91910 0.92409 0.92407 0.88411 0.87721 0.88085 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.26 71.98 0.67 -2.00 16 2 C 0.12 2.51 2.71 44.92 0.12 2.63 16 3 H 0.04 0.81 7.56 -2.39 -0.02 0.79 16 4 N -0.69 -17.00 5.77 -491.56 -2.84 -19.83 16 5 C 0.07 2.02 5.48 86.31 0.47 2.50 16 6 C -0.10 -3.64 5.47 30.60 0.17 -3.47 16 7 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 8 C 0.02 1.24 4.97 29.85 0.15 1.39 16 9 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 11 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 12 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 13 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 17 C -0.14 -2.42 1.81 -52.18 -0.09 -2.51 16 18 C -0.10 -1.79 9.15 71.98 0.66 -1.13 16 19 C -0.16 -2.29 9.45 30.60 0.29 -2.00 16 20 C -0.18 -2.80 9.89 30.60 0.30 -2.50 16 21 H 0.04 0.98 7.45 -2.38 -0.02 0.96 16 22 H 0.07 1.12 7.29 -2.39 -0.02 1.11 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.34 8.20 6.98 -89.69 -0.63 7.57 16 25 H 0.03 0.79 8.06 -2.38 -0.02 0.77 16 26 H 0.07 1.96 7.44 -2.39 -0.02 1.94 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 34 H 0.06 0.91 8.11 -2.39 -0.02 0.89 16 35 H 0.06 1.07 6.76 -2.39 -0.02 1.06 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.30 7.61 -2.39 -0.02 1.29 16 38 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 Total: -1.00 -64.06 320.59 3.41 -60.65 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.34 Total: 12.61 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.59 Total: -42.60 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.55 Total: -77.81 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.06 3.41 -60.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706954530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.695 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds