Wall clock time and date at job start Mon Mar 30 2020 03:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 108.69458 * 2 1 4 4 C 1.54072 * 108.81124 * 241.64615 * 2 1 3 5 5 C 1.50474 * 112.49622 * 197.42197 * 4 2 1 6 6 C 1.54246 * 108.51600 * 94.15743 * 5 4 2 7 7 C 1.45550 * 112.40554 * 280.00767 * 6 5 4 8 8 C 1.54242 * 112.40564 * 61.93429 * 7 6 5 9 9 C 1.50475 * 108.52555 * 280.01939 * 8 7 6 10 10 H 1.08998 * 108.79794 * 333.42173 * 9 8 7 11 11 N 1.46896 * 108.87398 * 214.92849 * 9 8 7 12 12 C 1.46896 * 111.00493 * 56.75761 * 11 9 8 13 13 C 1.46902 * 111.00107 * 180.71528 * 11 9 8 14 14 C 1.50706 * 109.47322 * 169.99518 * 13 11 9 15 15 H 1.07999 * 119.99350 * 0.02562 * 14 13 11 16 16 C 1.37867 * 119.99800 * 179.97438 * 14 13 11 17 17 N 1.31520 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46483 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46976 * 240.00173 * 18 16 14 21 21 H 1.48492 * 109.47084 * 119.99835 * 18 16 14 22 22 H 1.08997 * 109.47413 * 307.43615 * 1 2 3 23 23 H 1.09002 * 109.47315 * 67.44026 * 1 2 3 24 24 H 1.09008 * 109.47343 * 187.43799 * 1 2 3 25 25 H 1.08997 * 108.87902 * 318.20007 * 4 2 1 26 26 H 1.08994 * 108.87451 * 76.64782 * 4 2 1 27 27 H 1.08998 * 109.62926 * 213.86463 * 5 4 2 28 28 H 1.08997 * 109.63140 * 334.45129 * 5 4 2 29 29 H 1.09000 * 108.89301 * 40.75774 * 6 5 4 30 30 H 1.08994 * 108.89347 * 159.35345 * 6 5 4 31 31 H 1.08995 * 108.88914 * 182.68980 * 7 6 5 32 32 H 1.09001 * 108.89301 * 301.27671 * 7 6 5 33 33 H 1.09003 * 109.62544 * 160.30439 * 8 7 6 34 34 H 1.09000 * 109.62465 * 39.72748 * 8 7 6 35 35 H 1.08996 * 109.47423 * 175.89027 * 12 11 9 36 36 H 1.09005 * 109.47478 * 295.88886 * 12 11 9 37 37 H 1.08998 * 109.47356 * 55.88702 * 12 11 9 38 38 H 1.09003 * 109.46597 * 49.99631 * 13 11 9 39 39 H 1.08994 * 109.46922 * 289.99879 * 13 11 9 40 40 H 0.97005 * 119.99466 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8793 1.0324 0.0000 4 6 2.0268 -0.6926 -1.2835 5 6 3.4680 -1.1146 -1.1890 6 6 3.5187 -2.5830 -0.7195 7 6 3.3391 -2.7121 0.7191 8 6 1.9646 -2.1932 1.1888 9 6 2.0268 -0.6927 1.2833 10 1 3.0590 -0.3949 1.4679 11 7 1.1968 -0.2529 2.4127 12 6 1.6277 -0.8921 3.6631 13 6 1.2107 1.2107 2.5377 14 6 0.1676 1.6395 3.5374 15 1 -0.4440 0.8987 4.0309 16 6 -0.0049 2.9772 3.8227 17 7 0.7409 3.8792 3.2229 18 14 -1.2973 3.5087 5.0625 19 1 -1.9969 2.3108 5.5924 20 1 -2.2805 4.4030 4.4001 21 1 -0.6422 4.2347 6.1800 22 1 -0.3634 0.6247 0.8160 23 1 -0.3634 0.3943 -0.9490 24 1 -0.3634 -1.0191 0.1330 25 1 1.4127 -1.5739 -1.4690 26 1 1.9150 -0.0045 -2.1213 27 1 3.9403 -1.0265 -2.1674 28 1 3.9884 -0.4822 -0.4698 29 1 2.7317 -3.1426 -1.2251 30 1 4.4846 -3.0078 -0.9927 31 1 3.4324 -3.7628 0.9935 32 1 4.1206 -2.1448 1.2246 33 1 1.7299 -2.6124 2.1672 34 1 1.1985 -2.4833 0.4697 35 1 1.0450 -0.4945 4.4940 36 1 1.4727 -1.9688 3.5931 37 1 2.6852 -0.6874 3.8302 38 1 0.9919 1.6601 1.5690 39 1 2.1940 1.5372 2.8758 40 1 1.4123 3.6032 2.5793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709198371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:43 Heat of formation + Delta-G solvation = -14.868609 kcal Electronic energy + Delta-G solvation = -16934.996746 eV Core-core repulsion = 14555.927361 eV Total energy + Delta-G solvation = -2379.069385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.50509 -35.93963 -33.18946 -32.82744 -30.55061 -27.80824 -26.21396 -25.31000 -23.12682 -22.53250 -21.07898 -20.27110 -17.93933 -16.70256 -16.04929 -15.12235 -14.51131 -14.08595 -13.76888 -13.62368 -13.57893 -13.06627 -12.82597 -12.05578 -11.84057 -11.64598 -11.50112 -11.48524 -11.17591 -10.90246 -10.73332 -10.59632 -10.53637 -10.28944 -10.12338 -10.04467 -9.96115 -9.80157 -9.49059 -8.59306 -8.30490 -7.19747 -6.32375 -4.00528 3.46316 3.50208 3.64029 4.54177 4.73983 4.77831 4.97142 5.16075 5.35154 5.42381 5.44744 5.53767 5.54977 5.63211 5.87949 5.91804 6.02956 6.12598 6.19172 6.20502 6.24796 6.28515 6.31497 6.33890 6.38358 6.43895 6.52871 6.65182 6.69372 6.80461 6.94511 7.04032 7.19371 7.29029 7.90246 8.09339 8.41265 8.65802 8.92862 9.70071 11.06627 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042447 B = 0.007303 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.481414 B = 3833.123093 C = 4113.766651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.116 4.116 9 C 0.093 3.907 10 H 0.022 0.978 11 N -0.529 5.529 12 C 0.034 3.966 13 C 0.177 3.823 14 C -0.585 4.585 15 H 0.057 0.943 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 1.076 2.924 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.289 1.289 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.006 0.994 38 H 0.032 0.968 39 H -0.027 1.027 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -11.535 -6.866 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.154 4.154 9 C -0.016 4.016 10 H 0.040 0.960 11 N -0.253 5.253 12 C -0.114 4.114 13 C 0.051 3.949 14 C -0.624 4.624 15 H 0.075 0.925 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.904 3.096 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.215 1.215 22 H 0.103 0.897 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.049 0.951 39 H -0.009 1.009 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.769 -10.354 -6.210 12.387 hybrid contribution 1.640 -1.013 -0.593 2.017 sum 4.409 -11.367 -6.803 13.962 Atomic orbital electron populations 1.21799 0.94312 1.02144 1.01197 1.21492 0.97096 0.98690 0.92597 0.92032 1.21396 0.95720 1.00267 0.97434 1.21356 0.97369 0.96230 1.00672 1.20474 1.01066 0.96792 0.96763 1.20487 0.98123 1.00548 0.96426 1.21570 0.96260 0.95563 1.01972 1.21356 0.94186 0.94042 0.91989 0.96029 1.62131 1.51053 1.10101 1.01995 1.22296 0.97331 0.97879 0.93936 1.19945 0.95169 0.82280 0.97493 1.22050 1.20505 0.94437 1.25381 0.92503 1.25812 1.00403 0.92941 0.99905 1.70737 1.21511 1.36257 1.26895 0.83450 0.75346 0.75219 0.75544 1.21487 1.21403 1.21548 0.89722 0.94818 0.93370 0.92210 0.92737 0.92443 0.91760 0.92357 0.92971 0.92732 0.92598 0.90834 0.91562 0.90625 0.93044 0.97542 0.95064 1.00896 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.24 37.16 0.31 -2.20 16 2 C -0.08 -1.39 1.83 -89.50 -0.16 -1.56 16 3 H 0.06 1.20 7.07 -51.93 -0.37 0.83 16 4 C -0.11 -1.53 4.66 -27.43 -0.13 -1.66 16 5 C -0.12 -1.50 5.61 -27.34 -0.15 -1.65 16 6 C -0.11 -1.32 5.26 -29.59 -0.16 -1.47 16 7 C -0.12 -1.50 5.26 -29.59 -0.16 -1.66 16 8 C -0.12 -1.76 5.01 -27.34 -0.14 -1.90 16 9 C 0.09 1.69 1.18 -68.42 -0.08 1.61 16 10 H 0.02 0.42 6.62 -51.93 -0.34 0.08 16 11 N -0.53 -11.44 3.66 -237.19 -0.87 -12.31 16 12 C 0.03 0.68 9.00 60.06 0.54 1.22 16 13 C 0.18 4.57 2.95 -4.97 -0.01 4.55 16 14 C -0.59 -16.60 8.40 -34.44 -0.29 -16.89 16 15 H 0.06 1.63 7.16 -52.49 -0.38 1.25 16 16 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 17 N -0.92 -28.14 13.65 55.43 0.76 -27.38 16 18 Si 1.08 25.66 29.90 -169.99 -5.08 20.58 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H 0.08 1.88 5.75 -51.93 -0.30 1.58 16 23 H 0.03 0.55 8.11 -51.93 -0.42 0.13 16 24 H 0.05 0.83 7.30 -51.92 -0.38 0.46 16 25 H 0.06 0.80 6.47 -51.93 -0.34 0.46 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.90 6.97 -51.93 -0.36 0.53 16 29 H 0.06 0.65 7.47 -51.93 -0.39 0.26 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.75 7.46 -51.93 -0.39 0.37 16 33 H 0.07 1.14 5.24 -51.93 -0.27 0.87 16 34 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 35 H 0.08 1.65 6.68 -51.93 -0.35 1.30 16 36 H 0.05 0.88 5.89 -51.93 -0.31 0.58 16 37 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.03 0.84 4.86 -51.93 -0.25 0.59 16 39 H -0.03 -0.75 7.99 -51.93 -0.41 -1.16 16 40 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 LS Contribution 286.55 15.07 4.32 4.32 Total: -1.00 -29.64 286.55 -8.18 -37.82 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.78 Total: -1.68 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -0.53 Total: -21.34 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.11 Total: -39.69 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.64 -8.18 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709198371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.948 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds