Wall clock time and date at job start Mon Mar 30 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 108.69458 * 2 1 4 4 C 1.54072 * 108.81124 * 241.64615 * 2 1 3 5 5 C 1.50474 * 112.49622 * 197.42197 * 4 2 1 6 6 C 1.54246 * 108.51600 * 94.15743 * 5 4 2 7 7 C 1.45550 * 112.40554 * 280.00767 * 6 5 4 8 8 C 1.54242 * 112.40564 * 61.93429 * 7 6 5 9 9 C 1.50475 * 108.52555 * 280.01939 * 8 7 6 10 10 H 1.08998 * 108.79794 * 333.42173 * 9 8 7 11 11 N 1.46896 * 108.87398 * 214.92849 * 9 8 7 12 12 C 1.46896 * 111.00493 * 56.75761 * 11 9 8 13 13 C 1.46902 * 111.00107 * 180.71528 * 11 9 8 14 14 C 1.50706 * 109.47322 * 169.99518 * 13 11 9 15 15 H 1.07999 * 119.99350 * 0.02562 * 14 13 11 16 16 C 1.37867 * 119.99800 * 179.97438 * 14 13 11 17 17 N 1.31520 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46483 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46976 * 240.00173 * 18 16 14 21 21 H 1.48492 * 109.47084 * 119.99835 * 18 16 14 22 22 H 1.08997 * 109.47413 * 307.43615 * 1 2 3 23 23 H 1.09002 * 109.47315 * 67.44026 * 1 2 3 24 24 H 1.09008 * 109.47343 * 187.43799 * 1 2 3 25 25 H 1.08997 * 108.87902 * 318.20007 * 4 2 1 26 26 H 1.08994 * 108.87451 * 76.64782 * 4 2 1 27 27 H 1.08998 * 109.62926 * 213.86463 * 5 4 2 28 28 H 1.08997 * 109.63140 * 334.45129 * 5 4 2 29 29 H 1.09000 * 108.89301 * 40.75774 * 6 5 4 30 30 H 1.08994 * 108.89347 * 159.35345 * 6 5 4 31 31 H 1.08995 * 108.88914 * 182.68980 * 7 6 5 32 32 H 1.09001 * 108.89301 * 301.27671 * 7 6 5 33 33 H 1.09003 * 109.62544 * 160.30439 * 8 7 6 34 34 H 1.09000 * 109.62465 * 39.72748 * 8 7 6 35 35 H 1.08996 * 109.47423 * 175.89027 * 12 11 9 36 36 H 1.09005 * 109.47478 * 295.88886 * 12 11 9 37 37 H 1.08998 * 109.47356 * 55.88702 * 12 11 9 38 38 H 1.09003 * 109.46597 * 49.99631 * 13 11 9 39 39 H 1.08994 * 109.46922 * 289.99879 * 13 11 9 40 40 H 0.97005 * 119.99466 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8793 1.0324 0.0000 4 6 2.0268 -0.6926 -1.2835 5 6 3.4680 -1.1146 -1.1890 6 6 3.5187 -2.5830 -0.7195 7 6 3.3391 -2.7121 0.7191 8 6 1.9646 -2.1932 1.1888 9 6 2.0268 -0.6927 1.2833 10 1 3.0590 -0.3949 1.4679 11 7 1.1968 -0.2529 2.4127 12 6 1.6277 -0.8921 3.6631 13 6 1.2107 1.2107 2.5377 14 6 0.1676 1.6395 3.5374 15 1 -0.4440 0.8987 4.0309 16 6 -0.0049 2.9772 3.8227 17 7 0.7409 3.8792 3.2229 18 14 -1.2973 3.5087 5.0625 19 1 -1.9969 2.3108 5.5924 20 1 -2.2805 4.4030 4.4001 21 1 -0.6422 4.2347 6.1800 22 1 -0.3634 0.6247 0.8160 23 1 -0.3634 0.3943 -0.9490 24 1 -0.3634 -1.0191 0.1330 25 1 1.4127 -1.5739 -1.4690 26 1 1.9150 -0.0045 -2.1213 27 1 3.9403 -1.0265 -2.1674 28 1 3.9884 -0.4822 -0.4698 29 1 2.7317 -3.1426 -1.2251 30 1 4.4846 -3.0078 -0.9927 31 1 3.4324 -3.7628 0.9935 32 1 4.1206 -2.1448 1.2246 33 1 1.7299 -2.6124 2.1672 34 1 1.1985 -2.4833 0.4697 35 1 1.0450 -0.4945 4.4940 36 1 1.4727 -1.9688 3.5931 37 1 2.6852 -0.6874 3.8302 38 1 0.9919 1.6601 1.5690 39 1 2.1940 1.5372 2.8758 40 1 1.4123 3.6032 2.5793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709198371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:42 Heat of formation + Delta-G solvation = -32.240643 kcal Electronic energy + Delta-G solvation = -16935.750054 eV Core-core repulsion = 14555.927361 eV Total energy + Delta-G solvation = -2379.822693 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88353 -37.46857 -34.93311 -34.46706 -31.95083 -29.44412 -27.86096 -27.04041 -24.71963 -23.98395 -22.80222 -21.32790 -19.39724 -18.85844 -17.49004 -16.57541 -15.95828 -15.62586 -15.51412 -15.26693 -14.72447 -14.58885 -14.11214 -13.81773 -13.39206 -13.34677 -12.95551 -12.87054 -12.85151 -12.56196 -12.45724 -12.23883 -11.92891 -11.80467 -11.54759 -11.29570 -11.20849 -11.10553 -10.92723 -10.70569 -10.53195 -9.03867 -8.66602 -6.36595 1.51622 1.61359 1.78280 2.55104 3.14242 3.20643 3.65363 3.74580 4.05053 4.11523 4.24796 4.29085 4.37856 4.42395 4.48707 4.51300 4.59333 4.78904 4.84407 4.85690 4.90958 4.97731 5.01537 5.06278 5.12603 5.19327 5.25529 5.29097 5.31021 5.37275 5.44828 5.53657 5.58767 5.65330 5.84237 6.03786 6.44365 6.45561 6.70118 7.43815 8.71243 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042447 B = 0.007303 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.481414 B = 3833.123093 C = 4113.766651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 H 0.027 0.973 4 C -0.102 4.102 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.110 4.110 9 C 0.095 3.905 10 H 0.005 0.995 11 N -0.534 5.534 12 C 0.036 3.964 13 C 0.194 3.806 14 C -0.593 4.593 15 H 0.053 0.947 16 C -0.040 4.040 17 N -0.940 5.940 18 Si 1.125 2.875 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.280 1.280 22 H 0.038 0.962 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.003 0.997 38 H 0.017 0.983 39 H -0.062 1.062 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -13.759 -7.561 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 H 0.045 0.955 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.148 4.148 9 C -0.013 4.013 10 H 0.023 0.977 11 N -0.257 5.257 12 C -0.112 4.112 13 C 0.067 3.933 14 C -0.631 4.631 15 H 0.072 0.928 16 C -0.237 4.237 17 N -0.578 5.578 18 Si 0.946 3.054 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.206 1.206 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.022 0.978 38 H 0.035 0.965 39 H -0.045 1.045 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.422 -12.608 -6.919 14.584 hybrid contribution 1.786 -0.347 -0.404 1.864 sum 4.208 -12.955 -7.323 15.466 Atomic orbital electron populations 1.21670 0.94792 1.01888 1.00226 1.21499 0.96607 0.97381 0.94394 0.95459 1.21337 0.96887 1.00624 0.95114 1.21375 0.96133 0.96845 1.01358 1.20474 1.02734 0.95928 0.95828 1.20457 0.95815 1.01511 0.97249 1.21535 0.98366 0.92523 1.02338 1.21505 0.92515 0.96474 0.90845 0.97695 1.62117 1.52476 1.07312 1.03826 1.22311 0.96619 0.99755 0.92528 1.19601 0.92539 0.85233 0.95928 1.22346 1.20625 0.94617 1.25526 0.92839 1.27392 1.01717 0.93422 1.01121 1.70876 1.22374 1.36757 1.27817 0.82836 0.73191 0.75799 0.73560 1.19474 1.20429 1.20576 0.94242 0.93183 0.92095 0.90588 0.91978 0.90319 0.93915 0.90961 0.90999 0.90405 0.93854 0.90991 0.90642 0.92741 0.89378 0.97849 0.96512 1.04478 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.24 71.98 0.59 -4.11 16 2 C -0.08 -2.81 1.83 -10.07 -0.02 -2.83 16 3 H 0.03 1.12 7.07 -2.39 -0.02 1.10 16 4 C -0.10 -2.64 4.66 30.14 0.14 -2.49 16 5 C -0.12 -2.75 5.61 30.20 0.17 -2.58 16 6 C -0.11 -2.20 5.26 28.74 0.15 -2.04 16 7 C -0.11 -2.54 5.26 28.74 0.15 -2.39 16 8 C -0.11 -3.10 5.01 30.20 0.15 -2.94 16 9 C 0.09 3.46 1.18 44.46 0.05 3.51 16 10 H 0.01 0.20 6.62 -2.39 -0.02 0.19 16 11 N -0.53 -23.62 3.66 -904.34 -3.31 -26.93 16 12 C 0.04 1.45 9.00 127.69 1.15 2.59 16 13 C 0.19 10.55 2.95 85.56 0.25 10.80 16 14 C -0.59 -34.69 8.40 25.60 0.22 -34.48 16 15 H 0.05 3.11 7.16 -2.91 -0.02 3.09 16 16 C -0.04 -2.35 5.46 84.65 0.46 -1.89 16 17 N -0.94 -59.62 13.65 21.44 0.29 -59.33 16 18 Si 1.12 51.76 29.90 68.60 2.05 53.82 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H 0.04 1.79 5.75 -2.39 -0.01 1.78 16 23 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 24 H 0.06 2.03 7.30 -2.38 -0.02 2.02 16 25 H 0.08 1.75 6.47 -2.39 -0.02 1.74 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.17 6.97 -2.39 -0.02 1.15 16 29 H 0.07 1.26 7.47 -2.39 -0.02 1.25 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.09 7.46 -2.39 -0.02 1.07 16 33 H 0.07 2.04 5.24 -2.39 -0.01 2.03 16 34 H 0.07 2.00 6.19 -2.39 -0.01 1.99 16 35 H 0.05 2.40 6.68 -2.39 -0.02 2.38 16 36 H 0.09 2.89 5.89 -2.38 -0.01 2.87 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.02 0.97 4.86 -2.39 -0.01 0.96 16 39 H -0.06 -3.76 7.99 -2.39 -0.02 -3.78 16 40 H 0.25 16.29 7.22 -92.70 -0.67 15.62 16 Total: -1.00 -66.35 286.55 3.60 -62.75 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.09 Total: 8.53 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 3.47 Total: -38.84 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -3.01 Total: -86.26 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.82 kcal Total: -66.35 3.60 -62.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709198371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds