Wall clock time and date at job start Mon Mar 30 2020 03:20:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 108.78992 * 2 1
4 4 C 1.54066 * 108.72621 * 118.35529 * 2 1 3
5 5 C 1.50476 * 112.50250 * 162.51484 * 4 2 1
6 6 C 1.54244 * 108.51569 * 265.84926 * 5 4 2
7 7 C 1.45538 * 112.40677 * 79.98880 * 6 5 4
8 8 C 1.54241 * 112.40715 * 298.05811 * 7 6 5
9 9 C 1.50477 * 108.52086 * 79.98843 * 8 7 6
10 10 H 1.08990 * 108.80168 * 26.57507 * 9 8 7
11 11 N 1.46903 * 108.87459 * 145.07911 * 9 8 7
12 12 C 1.46899 * 110.99641 * 175.18344 * 11 9 8
13 13 C 1.46900 * 110.99763 * 299.12996 * 11 9 8
14 14 C 1.50699 * 109.47141 * 164.46756 * 13 11 9
15 15 H 1.07998 * 119.99503 * 359.97438 * 14 13 11
16 16 C 1.37870 * 119.99910 * 179.73015 * 14 13 11
17 17 N 1.31510 * 120.00585 * 0.27070 * 16 14 13
18 18 Si 1.86807 * 119.99779 * 180.27608 * 16 14 13
19 19 H 1.48497 * 109.47300 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.47230 * 119.99737 * 18 16 14
21 21 H 1.48505 * 109.46739 * 239.99747 * 18 16 14
22 22 H 1.09003 * 109.47261 * 178.41117 * 1 2 3
23 23 H 1.08999 * 109.47069 * 298.41170 * 1 2 3
24 24 H 1.09001 * 109.47177 * 58.40807 * 1 2 3
25 25 H 1.09001 * 108.87483 * 283.29420 * 4 2 1
26 26 H 1.09005 * 108.87873 * 41.83580 * 4 2 1
27 27 H 1.08998 * 109.62320 * 25.55061 * 5 4 2
28 28 H 1.08992 * 109.62975 * 145.94024 * 5 4 2
29 29 H 1.08999 * 108.88759 * 200.74341 * 6 5 4
30 30 H 1.09000 * 108.89175 * 319.23449 * 6 5 4
31 31 H 1.08995 * 108.89956 * 58.81864 * 7 6 5
32 32 H 1.09007 * 108.89524 * 177.40270 * 7 6 5
33 33 H 1.09001 * 109.62819 * 320.27569 * 8 7 6
34 34 H 1.08999 * 109.62785 * 199.69635 * 8 7 6
35 35 H 1.09000 * 109.47177 * 183.94896 * 12 11 9
36 36 H 1.09003 * 109.46871 * 303.94967 * 12 11 9
37 37 H 1.09002 * 109.47448 * 63.94869 * 12 11 9
38 38 H 1.08997 * 109.47008 * 44.46821 * 13 11 9
39 39 H 1.09001 * 109.47365 * 284.46942 * 13 11 9
40 40 H 0.96993 * 120.00483 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8811 1.0319 0.0000
4 6 2.0246 -0.6930 1.2840
5 6 3.4653 -1.1174 1.1910
6 6 3.5139 -2.5860 0.7220
7 6 3.3353 -2.7151 -0.7166
8 6 1.9621 -2.1943 -1.1877
9 6 2.0269 -0.6939 -1.2827
10 1 3.0596 -0.3978 -1.4664
11 7 1.1984 -0.2531 -2.4129
12 6 1.1361 1.2130 -2.4796
13 6 1.6896 -0.8172 -3.6772
14 6 0.6293 -0.6710 -4.7381
15 1 -0.3152 -0.2060 -4.4970
16 6 0.8669 -1.1263 -6.0175
17 7 2.0167 -1.6931 -6.3110
18 14 -0.4446 -0.9381 -7.3345
19 1 -1.6384 -0.2735 -6.7529
20 1 0.0877 -0.1137 -8.4489
21 1 -0.8259 -2.2782 -7.8483
22 1 -0.3634 -1.0273 -0.0285
23 1 -0.3633 0.4890 0.9039
24 1 -0.3633 0.5384 -0.8754
25 1 1.9132 -0.0044 2.1217
26 1 1.4100 -1.5742 1.4684
27 1 3.9872 -0.4860 0.4721
28 1 3.9376 -1.0265 2.1690
29 1 4.4783 -3.0127 0.9977
30 1 2.7256 -3.1441 1.2271
31 1 4.1191 -2.1508 -1.2217
32 1 3.4255 -3.7663 -0.9906
33 1 1.1949 -2.4829 -0.4692
34 1 1.7276 -2.6133 -2.1662
35 1 0.4609 1.5120 -3.2814
36 1 0.7694 1.6046 -1.5307
37 1 2.1319 1.6105 -2.6761
38 1 1.9213 -1.8731 -3.5382
39 1 2.5893 -0.2855 -3.9871
40 1 2.1840 -2.0131 -7.2112
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709198372.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:45
Heat of formation + Delta-G solvation = -8.856427 kcal
Electronic energy + Delta-G solvation = -16850.742308 eV
Core-core repulsion = 14471.933631 eV
Total energy + Delta-G solvation = -2378.808677 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.43680 -35.78722 -33.36392 -32.33590 -30.53497 -27.92084 -26.96158 -24.52991
-23.46621 -22.73282 -20.66417 -20.15804 -17.86856 -16.49757 -15.66337 -15.14186
-14.53774 -14.29497 -13.90861 -13.54180 -13.32735 -13.10428 -12.68710 -12.14432
-11.76346 -11.61761 -11.54471 -11.24022 -11.10211 -10.97044 -10.76603 -10.55428
-10.44114 -10.28520 -10.13186 -9.98293 -9.85720 -9.84245 -9.31763 -9.08657
-8.34980 -7.09822 -5.97632 -3.97993 3.33316 3.40684 3.45822 4.46041
4.84491 4.86956 5.04227 5.24553 5.36373 5.39023 5.48847 5.61198
5.64081 5.76811 5.90837 5.96738 6.08580 6.10801 6.17680 6.23629
6.31917 6.37608 6.40775 6.43730 6.45233 6.51431 6.57529 6.74615
6.74975 6.85485 6.93970 7.01210 7.38067 7.44564 7.89126 8.21852
8.31109 8.64943 9.10630 9.65764 11.13025
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.037748 B = 0.007435 C = 0.006645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 741.592727 B = 3764.967241 C = 4212.523358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.083 4.083
3 H 0.057 0.943
4 C -0.109 4.109
5 C -0.118 4.118
6 C -0.112 4.112
7 C -0.120 4.120
8 C -0.115 4.115
9 C 0.094 3.906
10 H 0.023 0.977
11 N -0.534 5.534
12 C 0.029 3.971
13 C 0.187 3.813
14 C -0.501 4.501
15 H 0.062 0.938
16 C 0.053 3.947
17 N -0.900 5.900
18 Si 0.895 3.105
19 H -0.273 1.273
20 H -0.286 1.286
21 H -0.285 1.285
22 H 0.053 0.947
23 H 0.033 0.967
24 H 0.076 0.924
25 H 0.052 0.948
26 H 0.061 0.939
27 H 0.063 0.937
28 H 0.055 0.945
29 H 0.051 0.949
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.056 0.944
33 H 0.061 0.939
34 H 0.087 0.913
35 H 0.068 0.932
36 H 0.055 0.945
37 H 0.007 0.993
38 H 0.038 0.962
39 H -0.012 1.012
40 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.336 1.103 13.701 13.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.102 4.102
3 H 0.075 0.925
4 C -0.147 4.147
5 C -0.156 4.156
6 C -0.149 4.149
7 C -0.158 4.158
8 C -0.153 4.153
9 C -0.014 4.014
10 H 0.041 0.959
11 N -0.259 5.259
12 C -0.119 4.119
13 C 0.062 3.938
14 C -0.540 4.540
15 H 0.081 0.919
16 C -0.148 4.148
17 N -0.540 5.540
18 Si 0.724 3.276
19 H -0.197 1.197
20 H -0.212 1.212
21 H -0.211 1.211
22 H 0.072 0.928
23 H 0.053 0.947
24 H 0.095 0.905
25 H 0.070 0.930
26 H 0.080 0.920
27 H 0.082 0.918
28 H 0.074 0.926
29 H 0.069 0.931
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.074 0.926
33 H 0.080 0.920
34 H 0.105 0.895
35 H 0.087 0.913
36 H 0.074 0.926
37 H 0.025 0.975
38 H 0.056 0.944
39 H 0.005 0.995
40 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 0.949 0.849 13.618 13.677
hybrid contribution 0.309 0.380 -1.014 1.127
sum 1.258 1.229 12.604 12.726
Atomic orbital electron populations
1.21879 0.94712 1.02218 1.00938 1.21560 0.96660 0.98412 0.93563
0.92493 1.21379 0.96078 1.00273 0.97006 1.21345 0.97106 0.96626
1.00516 1.20476 1.00995 0.96396 0.97077 1.20471 0.98435 1.01013
0.95844 1.21548 0.95754 0.95135 1.02847 1.21322 0.94272 0.94848
0.90994 0.95892 1.62247 1.51413 1.07562 1.04657 1.22378 0.99225
0.89408 1.00901 1.19846 0.94306 0.95329 0.84341 1.21221 1.01110
1.38079 0.93569 0.91934 1.24986 0.95592 0.95577 0.98600 1.69967
1.22990 1.40805 1.20259 0.86481 0.81876 0.77697 0.81595 1.19710
1.21221 1.21089 0.92821 0.94743 0.90495 0.92971 0.92044 0.91796
0.92594 0.93063 0.92478 0.92467 0.92571 0.92037 0.89481 0.91314
0.92621 0.97497 0.94385 0.99462 0.93106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.11 8.17 37.16 0.30 -1.81 16
2 C -0.08 -1.25 1.83 -89.51 -0.16 -1.41 16
3 H 0.06 0.85 7.23 -51.93 -0.38 0.48 16
4 C -0.11 -1.39 4.68 -27.44 -0.13 -1.52 16
5 C -0.12 -1.45 5.61 -27.34 -0.15 -1.60 16
6 C -0.11 -1.40 5.26 -29.60 -0.16 -1.56 16
7 C -0.12 -1.80 5.26 -29.60 -0.16 -1.95 16
8 C -0.12 -2.02 4.99 -27.34 -0.14 -2.16 16
9 C 0.09 1.71 1.19 -68.41 -0.08 1.63 16
10 H 0.02 0.45 6.62 -51.93 -0.34 0.11 16
11 N -0.53 -11.50 3.64 -237.18 -0.86 -12.36 16
12 C 0.03 0.58 8.16 60.06 0.49 1.07 16
13 C 0.19 4.88 4.51 -4.98 -0.02 4.86 16
14 C -0.50 -14.19 8.59 -34.44 -0.30 -14.49 16
15 H 0.06 1.77 7.48 -52.49 -0.39 1.37 16
16 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16
17 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16
18 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16
19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
22 H 0.05 0.84 7.37 -51.93 -0.38 0.45 16
23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
24 H 0.08 1.28 5.22 -51.93 -0.27 1.01 16
25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
26 H 0.06 0.78 6.46 -51.93 -0.34 0.45 16
27 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16
28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.06 0.68 7.47 -51.93 -0.39 0.30 16
31 H 0.06 0.91 7.47 -51.93 -0.39 0.53 16
32 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16
33 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16
34 H 0.09 1.81 5.43 -51.93 -0.28 1.53 16
35 H 0.07 1.44 7.25 -51.93 -0.38 1.07 16
36 H 0.06 0.94 4.77 -51.93 -0.25 0.69 16
37 H 0.01 0.13 8.11 -51.93 -0.42 -0.29 16
38 H 0.04 1.05 5.53 -51.93 -0.29 0.76 16
39 H -0.01 -0.35 8.04 -51.93 -0.42 -0.77 16
40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 288.14 15.07 4.34 4.34
Total: -1.00 -29.07 288.14 -8.24 -37.31
By element:
Atomic # 1 Polarization: 4.44 SS G_CDS: -6.84 Total: -2.40 kcal
Atomic # 6 Polarization: -16.92 SS G_CDS: -0.60 Total: -17.51 kcal
Atomic # 7 Polarization: -38.47 SS G_CDS: -0.13 Total: -38.60 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -29.07 -8.24 -37.31 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709198372.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.454 kcal
(2) G-P(sol) polarization free energy of solvation -29.067 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.613 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds