Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 108.78992 * 2 1 4 4 C 1.54066 * 108.72621 * 118.35529 * 2 1 3 5 5 C 1.50476 * 112.50250 * 162.51484 * 4 2 1 6 6 C 1.54244 * 108.51569 * 265.84926 * 5 4 2 7 7 C 1.45538 * 112.40677 * 79.98880 * 6 5 4 8 8 C 1.54241 * 112.40715 * 298.05811 * 7 6 5 9 9 C 1.50477 * 108.52086 * 79.98843 * 8 7 6 10 10 H 1.08990 * 108.80168 * 26.57507 * 9 8 7 11 11 N 1.46903 * 108.87459 * 145.07911 * 9 8 7 12 12 C 1.46899 * 110.99641 * 175.18344 * 11 9 8 13 13 C 1.46900 * 110.99763 * 299.12996 * 11 9 8 14 14 C 1.50699 * 109.47141 * 164.46756 * 13 11 9 15 15 H 1.07998 * 119.99503 * 359.97438 * 14 13 11 16 16 C 1.37870 * 119.99910 * 179.73015 * 14 13 11 17 17 N 1.31510 * 120.00585 * 0.27070 * 16 14 13 18 18 Si 1.86807 * 119.99779 * 180.27608 * 16 14 13 19 19 H 1.48497 * 109.47300 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47230 * 119.99737 * 18 16 14 21 21 H 1.48505 * 109.46739 * 239.99747 * 18 16 14 22 22 H 1.09003 * 109.47261 * 178.41117 * 1 2 3 23 23 H 1.08999 * 109.47069 * 298.41170 * 1 2 3 24 24 H 1.09001 * 109.47177 * 58.40807 * 1 2 3 25 25 H 1.09001 * 108.87483 * 283.29420 * 4 2 1 26 26 H 1.09005 * 108.87873 * 41.83580 * 4 2 1 27 27 H 1.08998 * 109.62320 * 25.55061 * 5 4 2 28 28 H 1.08992 * 109.62975 * 145.94024 * 5 4 2 29 29 H 1.08999 * 108.88759 * 200.74341 * 6 5 4 30 30 H 1.09000 * 108.89175 * 319.23449 * 6 5 4 31 31 H 1.08995 * 108.89956 * 58.81864 * 7 6 5 32 32 H 1.09007 * 108.89524 * 177.40270 * 7 6 5 33 33 H 1.09001 * 109.62819 * 320.27569 * 8 7 6 34 34 H 1.08999 * 109.62785 * 199.69635 * 8 7 6 35 35 H 1.09000 * 109.47177 * 183.94896 * 12 11 9 36 36 H 1.09003 * 109.46871 * 303.94967 * 12 11 9 37 37 H 1.09002 * 109.47448 * 63.94869 * 12 11 9 38 38 H 1.08997 * 109.47008 * 44.46821 * 13 11 9 39 39 H 1.09001 * 109.47365 * 284.46942 * 13 11 9 40 40 H 0.96993 * 120.00483 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0246 -0.6930 1.2840 5 6 3.4653 -1.1174 1.1910 6 6 3.5139 -2.5860 0.7220 7 6 3.3353 -2.7151 -0.7166 8 6 1.9621 -2.1943 -1.1877 9 6 2.0269 -0.6939 -1.2827 10 1 3.0596 -0.3978 -1.4664 11 7 1.1984 -0.2531 -2.4129 12 6 1.1361 1.2130 -2.4796 13 6 1.6896 -0.8172 -3.6772 14 6 0.6293 -0.6710 -4.7381 15 1 -0.3152 -0.2060 -4.4970 16 6 0.8669 -1.1263 -6.0175 17 7 2.0167 -1.6931 -6.3110 18 14 -0.4446 -0.9381 -7.3345 19 1 -1.6384 -0.2735 -6.7529 20 1 0.0877 -0.1137 -8.4489 21 1 -0.8259 -2.2782 -7.8483 22 1 -0.3634 -1.0273 -0.0285 23 1 -0.3633 0.4890 0.9039 24 1 -0.3633 0.5384 -0.8754 25 1 1.9132 -0.0044 2.1217 26 1 1.4100 -1.5742 1.4684 27 1 3.9872 -0.4860 0.4721 28 1 3.9376 -1.0265 2.1690 29 1 4.4783 -3.0127 0.9977 30 1 2.7256 -3.1441 1.2271 31 1 4.1191 -2.1508 -1.2217 32 1 3.4255 -3.7663 -0.9906 33 1 1.1949 -2.4829 -0.4692 34 1 1.7276 -2.6133 -2.1662 35 1 0.4609 1.5120 -3.2814 36 1 0.7694 1.6046 -1.5307 37 1 2.1319 1.6105 -2.6761 38 1 1.9213 -1.8731 -3.5382 39 1 2.5893 -0.2855 -3.9871 40 1 2.1840 -2.0131 -7.2112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709198372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -8.856427 kcal Electronic energy + Delta-G solvation = -16850.742308 eV Core-core repulsion = 14471.933631 eV Total energy + Delta-G solvation = -2378.808677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43680 -35.78722 -33.36392 -32.33590 -30.53497 -27.92084 -26.96158 -24.52991 -23.46621 -22.73282 -20.66417 -20.15804 -17.86856 -16.49757 -15.66337 -15.14186 -14.53774 -14.29497 -13.90861 -13.54180 -13.32735 -13.10428 -12.68710 -12.14432 -11.76346 -11.61761 -11.54471 -11.24022 -11.10211 -10.97044 -10.76603 -10.55428 -10.44114 -10.28520 -10.13186 -9.98293 -9.85720 -9.84245 -9.31763 -9.08657 -8.34980 -7.09822 -5.97632 -3.97993 3.33316 3.40684 3.45822 4.46041 4.84491 4.86956 5.04227 5.24553 5.36373 5.39023 5.48847 5.61198 5.64081 5.76811 5.90837 5.96738 6.08580 6.10801 6.17680 6.23629 6.31917 6.37608 6.40775 6.43730 6.45233 6.51431 6.57529 6.74615 6.74975 6.85485 6.93970 7.01210 7.38067 7.44564 7.89126 8.21852 8.31109 8.64943 9.10630 9.65764 11.13025 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037748 B = 0.007435 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.592727 B = 3764.967241 C = 4212.523358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.115 4.115 9 C 0.094 3.906 10 H 0.023 0.977 11 N -0.534 5.534 12 C 0.029 3.971 13 C 0.187 3.813 14 C -0.501 4.501 15 H 0.062 0.938 16 C 0.053 3.947 17 N -0.900 5.900 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.007 0.993 38 H 0.038 0.962 39 H -0.012 1.012 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 1.103 13.701 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.153 4.153 9 C -0.014 4.014 10 H 0.041 0.959 11 N -0.259 5.259 12 C -0.119 4.119 13 C 0.062 3.938 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.148 4.148 17 N -0.540 5.540 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.949 0.849 13.618 13.677 hybrid contribution 0.309 0.380 -1.014 1.127 sum 1.258 1.229 12.604 12.726 Atomic orbital electron populations 1.21879 0.94712 1.02218 1.00938 1.21560 0.96660 0.98412 0.93563 0.92493 1.21379 0.96078 1.00273 0.97006 1.21345 0.97106 0.96626 1.00516 1.20476 1.00995 0.96396 0.97077 1.20471 0.98435 1.01013 0.95844 1.21548 0.95754 0.95135 1.02847 1.21322 0.94272 0.94848 0.90994 0.95892 1.62247 1.51413 1.07562 1.04657 1.22378 0.99225 0.89408 1.00901 1.19846 0.94306 0.95329 0.84341 1.21221 1.01110 1.38079 0.93569 0.91934 1.24986 0.95592 0.95577 0.98600 1.69967 1.22990 1.40805 1.20259 0.86481 0.81876 0.77697 0.81595 1.19710 1.21221 1.21089 0.92821 0.94743 0.90495 0.92971 0.92044 0.91796 0.92594 0.93063 0.92478 0.92467 0.92571 0.92037 0.89481 0.91314 0.92621 0.97497 0.94385 0.99462 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.17 37.16 0.30 -1.81 16 2 C -0.08 -1.25 1.83 -89.51 -0.16 -1.41 16 3 H 0.06 0.85 7.23 -51.93 -0.38 0.48 16 4 C -0.11 -1.39 4.68 -27.44 -0.13 -1.52 16 5 C -0.12 -1.45 5.61 -27.34 -0.15 -1.60 16 6 C -0.11 -1.40 5.26 -29.60 -0.16 -1.56 16 7 C -0.12 -1.80 5.26 -29.60 -0.16 -1.95 16 8 C -0.12 -2.02 4.99 -27.34 -0.14 -2.16 16 9 C 0.09 1.71 1.19 -68.41 -0.08 1.63 16 10 H 0.02 0.45 6.62 -51.93 -0.34 0.11 16 11 N -0.53 -11.50 3.64 -237.18 -0.86 -12.36 16 12 C 0.03 0.58 8.16 60.06 0.49 1.07 16 13 C 0.19 4.88 4.51 -4.98 -0.02 4.86 16 14 C -0.50 -14.19 8.59 -34.44 -0.30 -14.49 16 15 H 0.06 1.77 7.48 -52.49 -0.39 1.37 16 16 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.05 0.84 7.37 -51.93 -0.38 0.45 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 1.28 5.22 -51.93 -0.27 1.01 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.78 6.46 -51.93 -0.34 0.45 16 27 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.68 7.47 -51.93 -0.39 0.30 16 31 H 0.06 0.91 7.47 -51.93 -0.39 0.53 16 32 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 34 H 0.09 1.81 5.43 -51.93 -0.28 1.53 16 35 H 0.07 1.44 7.25 -51.93 -0.38 1.07 16 36 H 0.06 0.94 4.77 -51.93 -0.25 0.69 16 37 H 0.01 0.13 8.11 -51.93 -0.42 -0.29 16 38 H 0.04 1.05 5.53 -51.93 -0.29 0.76 16 39 H -0.01 -0.35 8.04 -51.93 -0.42 -0.77 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 288.14 15.07 4.34 4.34 Total: -1.00 -29.07 288.14 -8.24 -37.31 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.84 Total: -2.40 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.60 Total: -17.51 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.13 Total: -38.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.07 -8.24 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709198372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.454 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds