Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 108.78992 * 2 1 4 4 C 1.54066 * 108.72621 * 118.35529 * 2 1 3 5 5 C 1.50476 * 112.50250 * 162.51484 * 4 2 1 6 6 C 1.54244 * 108.51569 * 265.84926 * 5 4 2 7 7 C 1.45538 * 112.40677 * 79.98880 * 6 5 4 8 8 C 1.54241 * 112.40715 * 298.05811 * 7 6 5 9 9 C 1.50477 * 108.52086 * 79.98843 * 8 7 6 10 10 H 1.08990 * 108.80168 * 26.57507 * 9 8 7 11 11 N 1.46903 * 108.87459 * 145.07911 * 9 8 7 12 12 C 1.46899 * 110.99641 * 175.18344 * 11 9 8 13 13 C 1.46900 * 110.99763 * 299.12996 * 11 9 8 14 14 C 1.50699 * 109.47141 * 164.46756 * 13 11 9 15 15 H 1.07998 * 119.99503 * 359.97438 * 14 13 11 16 16 C 1.37870 * 119.99910 * 179.73015 * 14 13 11 17 17 N 1.31510 * 120.00585 * 0.27070 * 16 14 13 18 18 Si 1.86807 * 119.99779 * 180.27608 * 16 14 13 19 19 H 1.48497 * 109.47300 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47230 * 119.99737 * 18 16 14 21 21 H 1.48505 * 109.46739 * 239.99747 * 18 16 14 22 22 H 1.09003 * 109.47261 * 178.41117 * 1 2 3 23 23 H 1.08999 * 109.47069 * 298.41170 * 1 2 3 24 24 H 1.09001 * 109.47177 * 58.40807 * 1 2 3 25 25 H 1.09001 * 108.87483 * 283.29420 * 4 2 1 26 26 H 1.09005 * 108.87873 * 41.83580 * 4 2 1 27 27 H 1.08998 * 109.62320 * 25.55061 * 5 4 2 28 28 H 1.08992 * 109.62975 * 145.94024 * 5 4 2 29 29 H 1.08999 * 108.88759 * 200.74341 * 6 5 4 30 30 H 1.09000 * 108.89175 * 319.23449 * 6 5 4 31 31 H 1.08995 * 108.89956 * 58.81864 * 7 6 5 32 32 H 1.09007 * 108.89524 * 177.40270 * 7 6 5 33 33 H 1.09001 * 109.62819 * 320.27569 * 8 7 6 34 34 H 1.08999 * 109.62785 * 199.69635 * 8 7 6 35 35 H 1.09000 * 109.47177 * 183.94896 * 12 11 9 36 36 H 1.09003 * 109.46871 * 303.94967 * 12 11 9 37 37 H 1.09002 * 109.47448 * 63.94869 * 12 11 9 38 38 H 1.08997 * 109.47008 * 44.46821 * 13 11 9 39 39 H 1.09001 * 109.47365 * 284.46942 * 13 11 9 40 40 H 0.96993 * 120.00483 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0246 -0.6930 1.2840 5 6 3.4653 -1.1174 1.1910 6 6 3.5139 -2.5860 0.7220 7 6 3.3353 -2.7151 -0.7166 8 6 1.9621 -2.1943 -1.1877 9 6 2.0269 -0.6939 -1.2827 10 1 3.0596 -0.3978 -1.4664 11 7 1.1984 -0.2531 -2.4129 12 6 1.1361 1.2130 -2.4796 13 6 1.6896 -0.8172 -3.6772 14 6 0.6293 -0.6710 -4.7381 15 1 -0.3152 -0.2060 -4.4970 16 6 0.8669 -1.1263 -6.0175 17 7 2.0167 -1.6931 -6.3110 18 14 -0.4446 -0.9381 -7.3345 19 1 -1.6384 -0.2735 -6.7529 20 1 0.0877 -0.1137 -8.4489 21 1 -0.8259 -2.2782 -7.8483 22 1 -0.3634 -1.0273 -0.0285 23 1 -0.3633 0.4890 0.9039 24 1 -0.3633 0.5384 -0.8754 25 1 1.9132 -0.0044 2.1217 26 1 1.4100 -1.5742 1.4684 27 1 3.9872 -0.4860 0.4721 28 1 3.9376 -1.0265 2.1690 29 1 4.4783 -3.0127 0.9977 30 1 2.7256 -3.1441 1.2271 31 1 4.1191 -2.1508 -1.2217 32 1 3.4255 -3.7663 -0.9906 33 1 1.1949 -2.4829 -0.4692 34 1 1.7276 -2.6133 -2.1662 35 1 0.4609 1.5120 -3.2814 36 1 0.7694 1.6046 -1.5307 37 1 2.1319 1.6105 -2.6761 38 1 1.9213 -1.8731 -3.5382 39 1 2.5893 -0.2855 -3.9871 40 1 2.1840 -2.0131 -7.2112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709198372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -25.579935 kcal Electronic energy + Delta-G solvation = -16851.467494 eV Core-core repulsion = 14471.933631 eV Total energy + Delta-G solvation = -2379.533863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80364 -37.29758 -34.98707 -34.09557 -31.94003 -29.47781 -28.73186 -26.07534 -25.14578 -23.97141 -22.42080 -21.29261 -19.28269 -18.53408 -17.18848 -16.83384 -16.05063 -15.90138 -15.24839 -14.91620 -14.74939 -14.59102 -14.04890 -14.01459 -13.26449 -13.17479 -12.87251 -12.73298 -12.66755 -12.53334 -12.50321 -12.25290 -12.07565 -11.66215 -11.50629 -11.40791 -11.20323 -11.05559 -10.93642 -10.86222 -10.53067 -8.92466 -8.18806 -6.28529 1.39709 1.40252 1.54107 2.40370 3.12587 3.32057 3.71578 3.84614 4.09633 4.20254 4.31013 4.35600 4.42144 4.51786 4.57567 4.61149 4.71255 4.88731 4.94254 4.96982 5.03331 5.06439 5.13128 5.18265 5.20119 5.28168 5.31594 5.35544 5.39172 5.44630 5.53131 5.57247 5.63569 5.68421 5.73368 6.12565 6.43227 6.73403 6.88709 7.40871 8.91959 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037748 B = 0.007435 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.592727 B = 3764.967241 C = 4212.523358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 H 0.061 0.939 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.095 3.905 10 H 0.005 0.995 11 N -0.537 5.537 12 C 0.033 3.967 13 C 0.203 3.797 14 C -0.519 4.519 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.278 1.278 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.091 0.909 37 H -0.001 1.001 38 H 0.019 0.981 39 H -0.050 1.050 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 1.454 15.595 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.079 0.921 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.014 4.014 10 H 0.023 0.977 11 N -0.261 5.261 12 C -0.115 4.115 13 C 0.077 3.923 14 C -0.557 4.557 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.204 1.204 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.017 0.983 38 H 0.036 0.964 39 H -0.033 1.033 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.043 1.208 15.534 15.581 hybrid contribution 0.624 0.268 -1.580 1.720 sum 0.667 1.476 13.954 14.047 Atomic orbital electron populations 1.21826 0.94390 1.01758 1.01414 1.21551 0.96811 0.98493 0.92884 0.92059 1.21361 0.96205 1.00767 0.95926 1.21358 0.96919 0.95803 1.01430 1.20456 1.02417 0.97214 0.94742 1.20428 0.96108 1.00660 0.97882 1.21468 0.97812 0.94657 1.00975 1.21462 0.92913 0.95516 0.91466 0.97692 1.62202 1.51740 1.08573 1.03609 1.22387 0.98524 0.88325 1.02233 1.19490 0.92463 0.93959 0.86382 1.21515 1.01374 1.38203 0.94601 0.92128 1.25916 0.97898 0.94974 1.01042 1.70097 1.25025 1.41546 1.21022 0.85345 0.79026 0.77940 0.78360 1.18762 1.20491 1.20355 0.93618 0.91866 0.92493 0.90571 0.91610 0.93407 0.89986 0.91355 0.91231 0.94255 0.92289 0.90649 0.93626 0.92945 0.89075 0.98258 0.96362 1.03268 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.17 71.98 0.59 -3.21 16 2 C -0.08 -2.21 1.83 -10.07 -0.02 -2.23 16 3 H 0.06 1.69 7.23 -2.39 -0.02 1.67 16 4 C -0.10 -2.30 4.68 30.14 0.14 -2.16 16 5 C -0.12 -2.54 5.61 30.20 0.17 -2.37 16 6 C -0.11 -2.52 5.26 28.74 0.15 -2.37 16 7 C -0.11 -3.38 5.26 28.74 0.15 -3.23 16 8 C -0.11 -3.98 4.99 30.20 0.15 -3.83 16 9 C 0.09 3.48 1.19 44.46 0.05 3.54 16 10 H 0.01 0.21 6.62 -2.39 -0.02 0.19 16 11 N -0.54 -23.83 3.64 -904.31 -3.29 -27.12 16 12 C 0.03 1.34 8.16 127.69 1.04 2.38 16 13 C 0.20 11.22 4.51 85.56 0.39 11.60 16 14 C -0.52 -30.30 8.59 25.60 0.22 -30.08 16 15 H 0.06 3.49 7.48 -2.91 -0.02 3.47 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 17 N -0.94 -57.72 13.29 21.44 0.28 -57.44 16 18 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H 0.04 1.33 7.37 -2.39 -0.02 1.32 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.81 5.22 -2.39 -0.01 1.79 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.42 6.46 -2.38 -0.02 1.40 16 27 H 0.05 1.20 6.97 -2.39 -0.02 1.18 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.45 7.47 -2.39 -0.02 1.43 16 31 H 0.04 1.30 7.47 -2.39 -0.02 1.28 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 2.44 6.20 -2.39 -0.01 2.42 16 34 H 0.05 2.01 5.43 -2.39 -0.01 2.00 16 35 H 0.05 2.24 7.25 -2.39 -0.02 2.22 16 36 H 0.09 2.98 4.77 -2.39 -0.01 2.96 16 37 H 0.00 -0.05 8.11 -2.39 -0.02 -0.07 16 38 H 0.02 1.08 5.53 -2.39 -0.01 1.07 16 39 H -0.05 -3.09 8.04 -2.39 -0.02 -3.10 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -64.56 288.14 3.51 -61.05 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.99 Total: 7.68 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.50 Total: -31.56 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.01 Total: -84.56 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.56 3.51 -61.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709198372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.471 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds