Wall clock time and date at job start Mon Mar 30 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50707 * 109.47180 * 174.99791 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47065 * 89.99986 * 9 7 5 11 11 H 1.48501 * 109.47473 * 210.00042 * 9 7 5 12 12 H 1.48498 * 109.47290 * 330.00321 * 9 7 5 13 13 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 14 14 C 1.46902 * 110.99573 * 58.95614 * 13 2 1 15 15 C 1.46898 * 110.99888 * 295.00248 * 13 2 1 16 16 H 1.08999 * 110.43345 * 59.30250 * 15 13 2 17 17 C 1.54885 * 110.48484 * 296.75419 * 15 13 2 18 18 C 1.54896 * 102.74871 * 203.37957 * 17 15 13 19 19 C 1.54275 * 104.19202 * 37.94435 * 18 17 15 20 20 C 1.54087 * 106.62106 * 336.28070 * 19 18 17 21 21 H 1.09001 * 110.00297 * 119.38237 * 20 19 18 22 22 C 1.53004 * 110.15790 * 240.87858 * 20 19 18 23 23 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 1.08998 * 109.47339 * 295.00204 * 4 2 1 27 27 H 1.09006 * 109.46721 * 55.00122 * 4 2 1 28 28 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47457 * 60.00221 * 14 13 2 30 30 H 1.09001 * 109.46615 * 179.97438 * 14 13 2 31 31 H 1.08990 * 109.47358 * 299.99539 * 14 13 2 32 32 H 1.08998 * 110.75874 * 321.69751 * 17 15 13 33 33 H 1.08998 * 110.75583 * 84.88671 * 17 15 13 34 34 H 1.08994 * 110.48847 * 156.62136 * 18 17 15 35 35 H 1.08996 * 110.48411 * 279.27129 * 18 17 15 36 36 H 1.09002 * 110.02718 * 95.67721 * 19 18 17 37 37 H 1.09001 * 110.02723 * 217.05632 * 19 18 17 38 38 H 1.08995 * 109.47169 * 177.11635 * 22 20 19 39 39 H 1.09002 * 109.46882 * 297.11591 * 22 20 19 40 40 H 1.09000 * 109.46951 * 57.11268 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4365 10 1 6.7000 -2.2146 -1.7254 11 1 6.5297 -1.0684 -3.8556 12 1 6.5268 0.2033 -1.7908 13 7 2.0196 -0.6925 1.1995 14 6 1.5283 -2.0761 1.2459 15 6 1.6486 0.0391 2.4181 16 1 0.5653 0.1375 2.4879 17 6 2.3222 1.4337 2.4393 18 6 2.3453 1.7792 3.9490 19 6 2.6536 0.4348 4.6401 20 6 2.2076 -0.6735 3.6668 21 1 3.0607 -1.2940 3.3922 22 6 1.1186 -1.5339 4.3109 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2617 -2.1369 28 1 4.0607 -2.2423 -4.0363 29 1 1.8762 -2.6151 0.3647 30 1 1.9060 -2.5658 2.1435 31 1 0.4385 -2.0743 1.2639 32 1 3.3349 1.3797 2.0398 33 1 1.7274 2.1585 1.8834 34 1 3.1290 2.5062 4.1621 35 1 1.3747 2.1585 4.2684 36 1 3.7225 0.3528 4.8371 37 1 2.0952 0.3579 5.5730 38 1 0.7755 -2.2812 3.5955 39 1 1.5231 -2.0327 5.1916 40 1 0.2815 -0.9005 4.6044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710011751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:31 Heat of formation + Delta-G solvation = -17.240920 kcal Electronic energy + Delta-G solvation = -16752.735209 eV Core-core repulsion = 14373.562953 eV Total energy + Delta-G solvation = -2379.172256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21049 -36.09391 -32.66438 -31.39892 -30.10692 -27.72254 -27.13142 -25.23555 -23.96980 -22.72832 -20.52410 -19.12737 -18.31930 -16.31065 -16.05501 -14.96662 -14.53720 -14.30038 -13.87602 -13.25093 -13.14035 -12.91903 -12.72523 -12.17000 -12.03668 -11.73362 -11.54461 -11.29026 -11.01817 -10.87835 -10.63270 -10.58167 -10.46714 -10.41905 -10.33497 -10.19652 -10.08937 -9.70090 -9.07734 -8.92914 -8.21842 -7.35491 -5.85272 -3.82724 3.41682 3.47384 3.51725 4.58377 4.61347 4.81065 4.89271 5.13999 5.46578 5.51887 5.55425 5.63457 5.72030 5.78548 5.83880 5.87506 5.95186 6.02877 6.04681 6.06834 6.10749 6.16140 6.22588 6.28393 6.39756 6.44484 6.49641 6.63593 6.73301 6.76245 6.84669 7.07801 7.60730 7.79186 8.01462 8.12131 8.18211 8.63109 9.23670 9.78823 11.26795 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028623 B = 0.007990 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.001791 B = 3503.488258 C = 3818.308877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.028 3.972 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.507 5.507 14 C 0.022 3.978 15 C 0.080 3.920 16 H 0.038 0.962 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.093 4.093 21 H 0.083 0.917 22 C -0.148 4.148 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.017 0.983 28 H 0.257 0.743 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.014 0.986 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 3.472 13.833 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.229 5.229 14 C -0.126 4.126 15 C -0.029 4.029 16 H 0.056 0.944 17 C -0.153 4.153 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.111 4.111 21 H 0.101 0.899 22 C -0.205 4.205 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.410 3.357 13.645 14.727 hybrid contribution 0.083 -0.022 -0.125 0.151 sum -4.327 3.335 13.520 14.582 Atomic orbital electron populations 1.22513 1.00149 1.01204 1.00508 1.21908 0.89806 0.98616 0.91904 0.91161 1.19229 0.96339 0.95418 0.89927 1.21186 0.91818 1.32780 1.06826 0.92118 1.25012 0.97957 0.95981 0.96025 1.69972 1.35142 1.37144 1.12359 0.86635 0.86525 0.78330 0.76699 1.20964 1.21672 1.20035 1.62255 1.58654 1.01427 1.00610 1.22486 0.96384 0.91102 1.02657 1.22549 0.96372 0.93548 0.90391 0.94397 1.22508 1.02094 0.95638 0.95027 1.22305 1.00772 0.96952 0.96066 1.22192 1.00789 0.94612 0.97823 1.21818 0.98631 0.96496 0.94204 0.89855 1.22018 0.98432 0.99747 1.00314 0.92953 0.94174 0.92716 0.96221 0.96522 0.93384 0.90139 0.92428 0.96792 0.90106 0.92209 0.91995 0.92309 0.92027 0.92375 0.92291 0.93126 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 8.51 37.16 0.32 -2.98 16 2 C 0.09 1.77 2.14 -67.71 -0.15 1.63 16 3 H 0.07 1.49 6.88 -51.93 -0.36 1.13 16 4 C 0.03 0.72 4.26 -27.88 -0.12 0.60 16 5 C -0.49 -13.76 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.52 13.29 55.43 0.74 -26.79 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.51 -9.72 4.29 -224.93 -0.97 -10.68 16 14 C 0.02 0.40 7.71 60.07 0.46 0.86 16 15 C 0.08 1.27 1.84 -66.06 -0.12 1.15 16 16 H 0.04 0.61 6.18 -51.93 -0.32 0.28 16 17 C -0.11 -1.73 5.38 -24.74 -0.13 -1.86 16 18 C -0.12 -1.50 6.83 -25.06 -0.17 -1.67 16 19 C -0.12 -1.40 6.47 -25.50 -0.16 -1.57 16 20 C -0.09 -1.29 2.39 -89.39 -0.21 -1.50 16 21 H 0.08 1.30 7.55 -51.93 -0.39 0.91 16 22 C -0.15 -1.79 8.55 37.16 0.32 -1.47 16 23 H 0.05 0.93 6.39 -51.93 -0.33 0.60 16 24 H 0.04 0.64 6.52 -51.93 -0.34 0.30 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.53 6.17 -51.93 -0.32 0.21 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.08 1.70 6.22 -51.93 -0.32 1.37 16 30 H 0.06 0.94 5.39 -51.93 -0.28 0.66 16 31 H 0.01 0.23 6.28 -51.93 -0.33 -0.09 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 0.88 7.83 -51.93 -0.41 0.48 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -29.45 297.08 -8.18 -37.63 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.03 Total: -2.36 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.37 Total: -19.55 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.23 Total: -37.47 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.45 -8.18 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.390 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds