Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50707 * 109.47180 * 174.99791 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47065 * 89.99986 * 9 7 5 11 11 H 1.48501 * 109.47473 * 210.00042 * 9 7 5 12 12 H 1.48498 * 109.47290 * 330.00321 * 9 7 5 13 13 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 14 14 C 1.46902 * 110.99573 * 58.95614 * 13 2 1 15 15 C 1.46898 * 110.99888 * 295.00248 * 13 2 1 16 16 H 1.08999 * 110.43345 * 59.30250 * 15 13 2 17 17 C 1.54885 * 110.48484 * 296.75419 * 15 13 2 18 18 C 1.54896 * 102.74871 * 203.37957 * 17 15 13 19 19 C 1.54275 * 104.19202 * 37.94435 * 18 17 15 20 20 C 1.54087 * 106.62106 * 336.28070 * 19 18 17 21 21 H 1.09001 * 110.00297 * 119.38237 * 20 19 18 22 22 C 1.53004 * 110.15790 * 240.87858 * 20 19 18 23 23 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 1.08998 * 109.47339 * 295.00204 * 4 2 1 27 27 H 1.09006 * 109.46721 * 55.00122 * 4 2 1 28 28 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47457 * 60.00221 * 14 13 2 30 30 H 1.09001 * 109.46615 * 179.97438 * 14 13 2 31 31 H 1.08990 * 109.47358 * 299.99539 * 14 13 2 32 32 H 1.08998 * 110.75874 * 321.69751 * 17 15 13 33 33 H 1.08998 * 110.75583 * 84.88671 * 17 15 13 34 34 H 1.08994 * 110.48847 * 156.62136 * 18 17 15 35 35 H 1.08996 * 110.48411 * 279.27129 * 18 17 15 36 36 H 1.09002 * 110.02718 * 95.67721 * 19 18 17 37 37 H 1.09001 * 110.02723 * 217.05632 * 19 18 17 38 38 H 1.08995 * 109.47169 * 177.11635 * 22 20 19 39 39 H 1.09002 * 109.46882 * 297.11591 * 22 20 19 40 40 H 1.09000 * 109.46951 * 57.11268 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4365 10 1 6.7000 -2.2146 -1.7254 11 1 6.5297 -1.0684 -3.8556 12 1 6.5268 0.2033 -1.7908 13 7 2.0196 -0.6925 1.1995 14 6 1.5283 -2.0761 1.2459 15 6 1.6486 0.0391 2.4181 16 1 0.5653 0.1375 2.4879 17 6 2.3222 1.4337 2.4393 18 6 2.3453 1.7792 3.9490 19 6 2.6536 0.4348 4.6401 20 6 2.2076 -0.6735 3.6668 21 1 3.0607 -1.2940 3.3922 22 6 1.1186 -1.5339 4.3109 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2617 -2.1369 28 1 4.0607 -2.2423 -4.0363 29 1 1.8762 -2.6151 0.3647 30 1 1.9060 -2.5658 2.1435 31 1 0.4385 -2.0743 1.2639 32 1 3.3349 1.3797 2.0398 33 1 1.7274 2.1585 1.8834 34 1 3.1290 2.5062 4.1621 35 1 1.3747 2.1585 4.2684 36 1 3.7225 0.3528 4.8371 37 1 2.0952 0.3579 5.5730 38 1 0.7755 -2.2812 3.5955 39 1 1.5231 -2.0327 5.1916 40 1 0.2815 -0.9005 4.6044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710011751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = -34.356321 kcal Electronic energy + Delta-G solvation = -16753.477389 eV Core-core repulsion = 14373.562953 eV Total energy + Delta-G solvation = -2379.914436 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52011 -37.51257 -34.77076 -32.63005 -31.62023 -29.29642 -28.70497 -26.44315 -25.49665 -24.53476 -21.79640 -20.28695 -19.84899 -18.35622 -17.60685 -16.55189 -16.00506 -15.79250 -15.27008 -14.64519 -14.48032 -14.28351 -14.10826 -13.73853 -13.59643 -13.16665 -13.00076 -12.87857 -12.64069 -12.52963 -12.32569 -11.99637 -11.95375 -11.82988 -11.56025 -11.46245 -11.27424 -11.09305 -11.06836 -10.91132 -10.46703 -8.83970 -8.09663 -6.14274 1.41041 1.42084 1.52972 2.47341 3.16076 3.29466 3.71189 3.83146 4.04939 4.26810 4.38676 4.45908 4.49799 4.52343 4.58949 4.62146 4.65875 4.71100 4.81457 4.85767 4.95242 5.05530 5.11500 5.13412 5.16337 5.22317 5.25900 5.30459 5.34758 5.39319 5.51919 5.54427 5.62091 5.75147 5.91354 6.35656 6.51724 6.63767 6.99733 7.51456 9.02465 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028623 B = 0.007990 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.001791 B = 3503.488258 C = 3818.308877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.063 0.937 4 C 0.034 3.966 5 C -0.497 4.497 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.527 5.527 14 C 0.030 3.970 15 C 0.079 3.921 16 H 0.046 0.954 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.092 4.092 21 H 0.061 0.939 22 C -0.144 4.144 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.055 0.945 26 H -0.002 1.002 27 H -0.011 1.011 28 H 0.258 0.742 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 4.236 16.114 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.003 4.003 5 C -0.535 4.535 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.250 5.250 14 C -0.117 4.117 15 C -0.029 4.029 16 H 0.064 0.936 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.111 4.111 21 H 0.079 0.921 22 C -0.201 4.201 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.016 0.984 27 H 0.007 0.993 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.467 4.130 15.943 17.064 hybrid contribution 0.087 -0.264 -0.838 0.883 sum -4.380 3.866 15.105 16.195 Atomic orbital electron populations 1.22377 0.97694 1.01504 1.01779 1.21579 0.91701 0.97394 0.90644 0.91848 1.19089 0.95248 0.94464 0.91517 1.21474 0.93233 1.32264 1.06530 0.92542 1.25855 1.02855 0.95716 0.95741 1.70100 1.37038 1.38150 1.13040 0.85578 0.80700 0.78637 0.76879 1.20393 1.21143 1.19103 1.62152 1.59544 1.01957 1.01378 1.22366 0.97141 0.90568 1.01676 1.22666 0.96898 0.93809 0.89491 0.93635 1.22505 1.00370 0.95375 0.97362 1.22280 1.02155 0.97358 0.93462 1.22183 1.01177 0.93560 0.98098 1.21801 0.98404 0.97016 0.93869 0.92074 1.21975 0.98134 0.99455 1.00506 0.93101 0.91661 0.92636 0.98359 0.99303 0.93299 0.93915 0.90559 0.95414 0.92763 0.92251 0.90950 0.90634 0.92015 0.90172 0.93151 0.91570 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.08 8.51 71.98 0.61 -5.47 16 2 C 0.10 3.98 2.14 44.91 0.10 4.08 16 3 H 0.06 2.72 6.88 -2.39 -0.02 2.70 16 4 C 0.03 1.81 4.26 29.85 0.13 1.94 16 5 C -0.50 -28.77 8.84 25.60 0.23 -28.54 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -58.66 13.29 21.45 0.28 -58.37 16 9 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.53 -20.17 4.29 -865.53 -3.72 -23.89 16 14 C 0.03 1.11 7.71 127.69 0.98 2.10 16 15 C 0.08 2.39 1.84 45.99 0.08 2.47 16 16 H 0.05 1.32 6.18 -2.39 -0.01 1.31 16 17 C -0.12 -3.40 5.38 31.89 0.17 -3.23 16 18 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 19 C -0.11 -2.36 6.47 31.39 0.20 -2.16 16 20 C -0.09 -2.36 2.39 -10.00 -0.02 -2.38 16 21 H 0.06 1.84 7.55 -2.39 -0.02 1.82 16 22 C -0.14 -3.03 8.55 71.98 0.62 -2.41 16 23 H 0.05 1.77 6.39 -2.38 -0.02 1.75 16 24 H 0.06 1.94 6.52 -2.39 -0.02 1.92 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.00 -0.10 6.17 -2.39 -0.01 -0.12 16 27 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.04 1.87 6.22 -2.38 -0.01 1.85 16 30 H 0.08 2.45 5.39 -2.39 -0.01 2.44 16 31 H 0.03 0.92 6.28 -2.39 -0.02 0.91 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.68 7.83 -2.39 -0.02 1.66 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.37 7.68 -2.39 -0.02 1.35 16 38 H 0.05 1.14 5.99 -2.39 -0.01 1.13 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -64.19 297.08 3.35 -60.83 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.98 Total: 8.84 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 3.78 Total: -35.73 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -3.43 Total: -82.26 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -64.19 3.35 -60.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710011751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.478 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds