Wall clock time and date at job start Mon Mar 30 2020 03:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.52993 * 109.47714 * 239.99386 * 2 1 3 5 5 C 1.52997 * 109.47714 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46807 * 59.99877 * 5 4 2 7 7 C 1.53001 * 109.46763 * 60.00398 * 6 5 4 8 8 C 1.52997 * 109.46807 * 180.02562 * 6 5 4 9 9 C 1.52993 * 109.47084 * 300.00509 * 6 5 4 10 10 C 1.52997 * 109.47714 * 60.00046 * 9 6 5 11 11 H 1.08997 * 109.47089 * 59.99386 * 10 9 6 12 12 N 1.46895 * 109.47522 * 180.02562 * 10 9 6 13 13 C 1.46904 * 111.00014 * 274.99938 * 12 10 9 14 14 C 1.50701 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 H 1.09000 * 109.47856 * 300.00405 * 1 2 3 23 23 H 1.09001 * 109.46795 * 60.00542 * 1 2 3 24 24 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47239 * 300.00912 * 4 2 1 26 26 H 1.09001 * 109.46930 * 60.00155 * 4 2 1 27 27 H 1.08991 * 109.47360 * 179.97438 * 5 4 2 28 28 H 1.08997 * 109.47089 * 300.00614 * 5 4 2 29 29 H 1.09000 * 109.47294 * 59.99772 * 7 6 5 30 30 H 1.09001 * 109.46928 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47014 * 299.99557 * 7 6 5 32 32 H 1.08997 * 109.47089 * 60.00737 * 8 6 5 33 33 H 1.09001 * 109.46795 * 180.02562 * 8 6 5 34 34 H 1.08991 * 109.47360 * 300.00007 * 8 6 5 35 35 H 1.08997 * 109.47344 * 299.99588 * 9 6 5 36 36 H 1.09001 * 109.46930 * 179.97438 * 9 6 5 37 37 H 1.00901 * 110.99972 * 38.94942 * 12 10 9 38 38 H 1.09000 * 109.47038 * 59.99386 * 13 12 10 39 39 H 1.09007 * 109.46566 * 299.99918 * 13 12 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0007 7 6 3.5689 -2.8857 0.0004 8 6 5.6094 -1.4434 0.0013 9 6 3.5694 -0.7221 1.2497 10 6 2.0394 -0.7215 1.2494 11 1 1.6757 -1.7490 1.2492 12 7 1.5496 -0.0284 2.4484 13 6 1.4862 -0.9430 3.5962 14 6 0.9801 -0.1983 4.8046 15 1 0.7309 0.8498 4.7277 16 6 0.8411 -0.8534 6.0098 17 7 1.1449 -2.1295 6.1035 18 14 0.2212 0.0717 7.5096 19 1 -0.0478 1.4853 7.1430 20 1 -1.0307 -0.5602 7.9984 21 1 1.2496 0.0255 8.5798 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6767 -1.7490 -1.2491 26 1 1.6768 -0.2076 -2.1391 27 1 3.9334 -1.2362 -2.1383 28 1 3.9337 0.3056 -1.2485 29 1 3.9323 -3.3996 -0.8895 30 1 3.9322 -3.3999 0.8902 31 1 2.4790 -2.8853 0.0001 32 1 5.9728 -0.4158 0.0018 33 1 5.9723 -1.9578 0.8912 34 1 5.9732 -1.9570 -0.8885 35 1 3.9330 0.3054 1.2500 36 1 3.9319 -1.2364 2.1398 37 1 2.1200 0.7769 2.6589 38 1 2.4814 -1.3371 3.8022 39 1 0.8095 -1.7665 3.3676 40 1 1.0475 -2.5902 6.9515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717486844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:50 Heat of formation + Delta-G solvation = -39.076631 kcal Electronic energy + Delta-G solvation = -16534.435266 eV Core-core repulsion = 14154.316142 eV Total energy + Delta-G solvation = -2380.119124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59951 -35.15555 -33.57665 -32.19736 -29.19895 -28.20847 -27.18420 -25.75608 -23.75627 -22.38633 -21.01667 -19.88445 -18.26151 -16.38013 -15.01545 -14.88328 -14.43590 -14.21677 -13.78193 -13.74613 -13.36437 -12.93488 -12.42955 -12.07244 -12.02546 -11.82961 -11.66826 -11.53382 -11.26181 -11.07892 -10.89517 -10.73669 -10.71481 -10.50052 -10.40652 -10.12525 -9.90715 -9.80434 -9.51183 -9.06202 -8.45003 -7.14286 -6.00143 -4.01603 3.32368 3.39634 3.44815 4.45429 4.84732 4.86180 4.94992 5.23007 5.35548 5.36122 5.51327 5.58249 5.66826 5.71925 5.79690 5.85553 5.88251 5.95012 6.02444 6.07625 6.14230 6.16891 6.23569 6.25929 6.39859 6.44999 6.48813 6.54195 6.61226 6.77114 6.90150 6.95345 7.34289 7.51261 7.83921 8.18829 8.47998 8.69956 9.08785 9.63316 11.10871 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.006708 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.370472 B = 4173.044105 C = 4613.192110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.135 4.135 10 C 0.091 3.909 11 H 0.072 0.928 12 N -0.683 5.683 13 C 0.196 3.804 14 C -0.512 4.512 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.326 0.674 38 H -0.014 1.014 39 H 0.025 0.975 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 1.455 -14.029 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.062 4.062 7 C -0.201 4.201 8 C -0.197 4.197 9 C -0.175 4.175 10 C -0.020 4.020 11 H 0.090 0.910 12 N -0.311 5.311 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.003 0.997 39 H 0.043 0.957 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.500 1.224 -14.037 14.791 hybrid contribution 0.718 0.212 1.174 1.393 sum 5.218 1.435 -12.862 13.955 Atomic orbital electron populations 1.21668 0.95026 1.01249 1.01307 1.21070 0.96011 0.98955 0.93594 0.92019 1.21660 0.95102 1.00883 0.97754 1.21570 0.95920 0.99979 0.96789 1.20490 0.94644 0.95610 0.95482 1.21962 1.01759 0.95304 1.01085 1.21865 0.95266 1.01323 1.01295 1.22346 0.98214 0.99891 0.97002 1.21589 0.90965 0.98025 0.91382 0.91012 1.60744 1.55125 1.10385 1.04875 1.19541 0.95076 0.91780 0.86681 1.21254 1.43208 0.96949 0.93623 0.92014 1.24985 0.95730 0.94921 0.98986 1.69973 1.49132 1.09044 1.25644 0.86462 0.78392 0.80032 0.82636 1.19690 1.21036 1.21165 0.90806 0.94464 0.93662 0.91904 0.92581 0.92649 0.92361 0.93343 0.92783 0.91848 0.92994 0.92777 0.93154 0.92485 0.91892 0.85728 0.99671 0.95686 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.03 37.16 0.34 -1.74 16 2 C -0.08 -1.15 2.43 -90.62 -0.22 -1.38 16 3 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.46 4.93 -26.74 -0.13 -1.59 16 5 C -0.11 -1.25 4.73 -26.73 -0.13 -1.38 16 6 C -0.06 -0.81 0.77 -154.51 -0.12 -0.93 16 7 C -0.14 -1.91 7.78 37.16 0.29 -1.63 16 8 C -0.14 -1.66 8.47 37.16 0.31 -1.34 16 9 C -0.14 -2.16 3.98 -26.74 -0.11 -2.27 16 10 C 0.09 1.61 1.64 -67.71 -0.11 1.50 16 11 H 0.07 1.38 6.09 -51.93 -0.32 1.06 16 12 N -0.68 -14.55 5.47 -107.99 -0.59 -15.14 16 13 C 0.20 5.15 5.24 -4.97 -0.03 5.12 16 14 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.07 1.30 7.60 -51.93 -0.39 0.90 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.89 4.81 -51.93 -0.25 0.64 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 36 H 0.06 1.15 7.45 -51.93 -0.39 0.76 16 37 H 0.33 6.77 8.46 -39.29 -0.33 6.44 16 38 H -0.01 -0.40 7.44 -51.93 -0.39 -0.79 16 39 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 303.54 15.07 4.57 4.57 Total: -1.00 -29.05 303.54 -8.06 -37.11 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.44 Total: 2.00 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.32 Total: -19.09 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.15 Total: -41.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.05 -8.06 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717486844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.968 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds