Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47089 * 2 1 4 4 C 1.52993 * 109.47714 * 239.99386 * 2 1 3 5 5 C 1.52997 * 109.47714 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46807 * 59.99877 * 5 4 2 7 7 C 1.53001 * 109.46763 * 60.00398 * 6 5 4 8 8 C 1.52997 * 109.46807 * 180.02562 * 6 5 4 9 9 C 1.52993 * 109.47084 * 300.00509 * 6 5 4 10 10 C 1.52997 * 109.47714 * 60.00046 * 9 6 5 11 11 H 1.08997 * 109.47089 * 59.99386 * 10 9 6 12 12 N 1.46895 * 109.47522 * 180.02562 * 10 9 6 13 13 C 1.46904 * 111.00014 * 274.99938 * 12 10 9 14 14 C 1.50701 * 109.47195 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 H 1.09000 * 109.47856 * 300.00405 * 1 2 3 23 23 H 1.09001 * 109.46795 * 60.00542 * 1 2 3 24 24 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47239 * 300.00912 * 4 2 1 26 26 H 1.09001 * 109.46930 * 60.00155 * 4 2 1 27 27 H 1.08991 * 109.47360 * 179.97438 * 5 4 2 28 28 H 1.08997 * 109.47089 * 300.00614 * 5 4 2 29 29 H 1.09000 * 109.47294 * 59.99772 * 7 6 5 30 30 H 1.09001 * 109.46928 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47014 * 299.99557 * 7 6 5 32 32 H 1.08997 * 109.47089 * 60.00737 * 8 6 5 33 33 H 1.09001 * 109.46795 * 180.02562 * 8 6 5 34 34 H 1.08991 * 109.47360 * 300.00007 * 8 6 5 35 35 H 1.08997 * 109.47344 * 299.99588 * 9 6 5 36 36 H 1.09001 * 109.46930 * 179.97438 * 9 6 5 37 37 H 1.00901 * 110.99972 * 38.94942 * 12 10 9 38 38 H 1.09000 * 109.47038 * 59.99386 * 13 12 10 39 39 H 1.09007 * 109.46566 * 299.99918 * 13 12 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7219 -1.2487 6 6 4.0795 -1.4434 0.0007 7 6 3.5689 -2.8857 0.0004 8 6 5.6094 -1.4434 0.0013 9 6 3.5694 -0.7221 1.2497 10 6 2.0394 -0.7215 1.2494 11 1 1.6757 -1.7490 1.2492 12 7 1.5496 -0.0284 2.4484 13 6 1.4862 -0.9430 3.5962 14 6 0.9801 -0.1983 4.8046 15 1 0.7309 0.8498 4.7277 16 6 0.8411 -0.8534 6.0098 17 7 1.1449 -2.1295 6.1035 18 14 0.2212 0.0717 7.5096 19 1 -0.0478 1.4853 7.1430 20 1 -1.0307 -0.5602 7.9984 21 1 1.2496 0.0255 8.5798 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6767 -1.7490 -1.2491 26 1 1.6768 -0.2076 -2.1391 27 1 3.9334 -1.2362 -2.1383 28 1 3.9337 0.3056 -1.2485 29 1 3.9323 -3.3996 -0.8895 30 1 3.9322 -3.3999 0.8902 31 1 2.4790 -2.8853 0.0001 32 1 5.9728 -0.4158 0.0018 33 1 5.9723 -1.9578 0.8912 34 1 5.9732 -1.9570 -0.8885 35 1 3.9330 0.3054 1.2500 36 1 3.9319 -1.2364 2.1398 37 1 2.1200 0.7769 2.6589 38 1 2.4814 -1.3371 3.8022 39 1 0.8095 -1.7665 3.3676 40 1 1.0475 -2.5902 6.9515 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717486844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = -56.208824 kcal Electronic energy + Delta-G solvation = -16535.178173 eV Core-core repulsion = 14154.316142 eV Total energy + Delta-G solvation = -2380.862031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83267 -36.75394 -35.12706 -34.06566 -30.67424 -29.50811 -28.24473 -27.67638 -24.94399 -24.11107 -22.65795 -21.19329 -19.41250 -18.51826 -16.75354 -16.36118 -15.90386 -15.49687 -15.14422 -15.03802 -14.72102 -14.35704 -14.20277 -13.69050 -13.45206 -13.09126 -12.89517 -12.78976 -12.69776 -12.63070 -12.56319 -12.25132 -12.10782 -12.01886 -11.75637 -11.55423 -11.33149 -11.15017 -11.00531 -10.73331 -10.64668 -8.95486 -8.22837 -6.34144 1.39410 1.40161 1.54216 2.39109 3.10036 3.55577 3.71430 3.80086 4.01717 4.18446 4.24877 4.44303 4.49154 4.57431 4.57790 4.70409 4.80268 4.82435 4.93025 4.97065 4.99288 5.06928 5.10378 5.14694 5.16846 5.21218 5.23533 5.27242 5.38174 5.43417 5.48058 5.59030 5.61520 5.68072 5.70781 6.04592 6.50788 6.77309 6.93018 7.37154 8.88764 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.006708 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.370472 B = 4173.044105 C = 4613.192110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.100 4.100 6 C -0.060 4.060 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.129 4.129 10 C 0.090 3.910 11 H 0.049 0.951 12 N -0.680 5.680 13 C 0.216 3.784 14 C -0.534 4.534 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.278 1.278 21 H -0.277 1.277 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.330 0.670 38 H -0.043 1.043 39 H -0.008 1.008 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.535 2.720 -15.545 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.060 4.060 7 C -0.200 4.200 8 C -0.194 4.194 9 C -0.168 4.168 10 C -0.020 4.020 11 H 0.067 0.933 12 N -0.309 5.309 13 C 0.088 3.912 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.203 1.203 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.147 0.853 38 H -0.025 1.025 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.856 2.496 -15.578 16.507 hybrid contribution 0.608 -0.220 1.620 1.744 sum 5.463 2.277 -13.958 15.161 Atomic orbital electron populations 1.21632 0.95368 1.00713 1.01294 1.21033 0.95698 0.99130 0.93152 0.91439 1.21634 0.95753 1.00598 0.96930 1.21555 0.95149 1.00511 0.96514 1.20498 0.95769 0.95107 0.94670 1.21957 1.00977 0.95734 1.01377 1.21833 0.93868 1.01986 1.01758 1.22239 0.96750 1.00319 0.97485 1.21679 0.92297 0.96918 0.91082 0.93296 1.60656 1.56060 1.09833 1.04328 1.19110 0.92430 0.91435 0.88202 1.21604 1.43647 0.97213 0.94736 0.91837 1.25968 0.95612 0.95806 1.02436 1.70106 1.49892 1.10777 1.26754 0.85283 0.77893 0.78890 0.78211 1.18627 1.20364 1.20291 0.93567 0.91667 0.94477 0.92204 0.90183 0.90246 0.91518 0.90846 0.94662 0.93071 0.92245 0.94023 0.91019 0.91786 0.95276 0.85268 1.02517 0.99026 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.03 71.98 0.65 -3.33 16 2 C -0.07 -2.04 2.43 -10.79 -0.03 -2.07 16 3 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.11 -2.49 4.93 30.59 0.15 -2.34 16 5 C -0.10 -2.05 4.73 30.60 0.14 -1.90 16 6 C -0.06 -1.49 0.77 -52.18 -0.04 -1.53 16 7 C -0.14 -3.74 7.78 71.98 0.56 -3.18 16 8 C -0.14 -2.98 8.47 71.98 0.61 -2.37 16 9 C -0.13 -4.18 3.98 30.59 0.12 -4.06 16 10 C 0.09 3.27 1.64 44.92 0.07 3.34 16 11 H 0.05 1.99 6.09 -2.39 -0.01 1.98 16 12 N -0.68 -30.11 5.47 -495.56 -2.71 -32.82 16 13 C 0.22 11.99 5.24 85.56 0.45 12.44 16 14 C -0.53 -31.32 9.32 25.60 0.24 -31.08 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 18 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H 0.05 1.62 7.60 -2.39 -0.02 1.61 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.40 6.43 -2.39 -0.02 1.39 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.45 4.81 -2.39 -0.01 1.44 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 36 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 37 H 0.33 14.08 8.46 -89.69 -0.76 13.32 16 38 H -0.04 -2.57 7.44 -2.39 -0.02 -2.58 16 39 H -0.01 -0.51 8.06 -2.38 -0.02 -0.53 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.35 303.54 3.22 -61.13 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.22 Total: 17.64 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.39 Total: -35.63 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.43 Total: -90.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.35 3.22 -61.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717486844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.922 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds