Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 C 1.53003 * 109.47459 * 120.00277 * 2 1 3 5 5 C 1.53006 * 109.46987 * 59.99447 * 4 2 1 6 6 C 1.52994 * 109.47304 * 60.00259 * 5 4 2 7 7 C 1.52996 * 109.47271 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47017 * 59.99656 * 6 5 4 9 9 C 1.52998 * 109.47186 * 299.99953 * 6 5 4 10 10 C 1.53000 * 109.46877 * 239.99722 * 2 1 3 11 11 H 1.08999 * 109.47431 * 179.97438 * 10 2 1 12 12 N 1.46910 * 109.47107 * 59.99873 * 10 2 1 13 13 C 1.46895 * 110.99769 * 154.99805 * 12 10 2 14 14 C 1.50702 * 109.46770 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46730 * 299.99872 * 1 2 3 24 24 H 1.09001 * 109.47597 * 59.99878 * 1 2 3 25 25 H 1.08997 * 109.46741 * 300.00066 * 4 2 1 26 26 H 1.08998 * 109.47415 * 179.97438 * 4 2 1 27 27 H 1.09007 * 109.47188 * 299.99823 * 5 4 2 28 28 H 1.09005 * 109.46730 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.47292 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46914 * 299.99747 * 7 6 5 31 31 H 1.08998 * 109.47251 * 60.00224 * 7 6 5 32 32 H 1.08999 * 109.47191 * 300.00286 * 8 6 5 33 33 H 1.09005 * 109.46728 * 59.99735 * 8 6 5 34 34 H 1.09001 * 109.47219 * 179.97438 * 8 6 5 35 35 H 1.08998 * 109.47142 * 299.99657 * 9 6 5 36 36 H 1.08997 * 109.47040 * 179.97438 * 9 6 5 37 37 H 1.00901 * 110.99285 * 31.04987 * 12 10 2 38 38 H 1.09004 * 109.47258 * 60.00516 * 13 12 10 39 39 H 1.08994 * 109.47601 * 300.00108 * 13 12 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0398 -2.8851 0.0000 7 6 1.5303 -4.3277 0.0003 8 6 3.5699 -2.8851 -0.0001 9 6 1.5298 -2.1638 -1.2492 10 6 2.0399 -0.7213 -1.2492 11 1 3.1299 -0.7210 -1.2495 12 7 1.5502 -0.0288 -2.4488 13 6 2.4338 -0.2747 -3.5961 14 6 1.9009 0.4504 -4.8050 15 1 0.9964 1.0357 -4.7284 16 6 2.5713 0.3717 -6.0073 17 7 3.6729 -0.3408 -6.1004 18 14 1.9149 1.2767 -7.5037 19 1 2.4980 2.6416 -7.5519 20 1 2.2892 0.5348 -8.7344 21 1 0.4357 1.3732 -7.4145 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 1.6767 -0.2075 2.1392 26 1 3.1300 -0.7217 1.2490 27 1 0.4399 -2.1638 1.2493 28 1 1.8930 -2.6775 2.1394 29 1 1.8939 -4.8417 -0.8895 30 1 1.8940 -4.8413 0.8903 31 1 0.4403 -4.3281 0.0005 32 1 3.9332 -1.8575 -0.0001 33 1 3.9332 -3.3989 0.8899 34 1 3.9332 -3.3994 -0.8899 35 1 0.4398 -2.1638 -1.2492 36 1 1.8934 -2.6774 -2.1392 37 1 1.4459 0.9601 -2.2780 38 1 2.4732 -1.3445 -3.8018 39 1 3.4357 0.0884 -3.3676 40 1 4.1443 -0.3964 -6.9463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717486849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -34.062774 kcal Electronic energy + Delta-G solvation = -16611.627370 eV Core-core repulsion = 14231.725664 eV Total energy + Delta-G solvation = -2379.901706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.78409 -35.13871 -33.49674 -32.12934 -29.21108 -27.80849 -26.95014 -25.98937 -24.79381 -22.39761 -20.74714 -19.86444 -17.37555 -16.37722 -15.30195 -14.86980 -14.70233 -14.52424 -13.96565 -13.80693 -13.14563 -12.67422 -12.40369 -12.14790 -11.98695 -11.81804 -11.68519 -11.50463 -11.35173 -11.07298 -11.01134 -10.78831 -10.68386 -10.47199 -10.32327 -10.12051 -9.80788 -9.66454 -9.42391 -9.05454 -8.43861 -7.17280 -5.99531 -4.01001 3.33533 3.39524 3.44293 4.45759 4.83727 4.87512 4.98094 5.25281 5.35219 5.36459 5.49457 5.52588 5.68060 5.72741 5.81505 5.83630 5.93306 5.99199 5.99442 6.03767 6.13821 6.15751 6.27771 6.30327 6.39174 6.41650 6.46999 6.51533 6.71912 6.75570 6.85300 6.97185 7.35939 7.49639 7.84481 8.20039 8.49697 8.70384 9.09104 9.63754 11.11536 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.006598 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.207953 B = 4243.002921 C = 4603.205366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.106 4.106 6 C -0.066 4.066 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.093 4.093 10 C 0.091 3.909 11 H 0.035 0.965 12 N -0.685 5.685 13 C 0.196 3.804 14 C -0.512 4.512 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.327 0.673 38 H 0.027 0.973 39 H -0.017 1.017 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -3.681 14.521 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.079 0.921 4 C -0.151 4.151 5 C -0.143 4.143 6 C -0.066 4.066 7 C -0.196 4.196 8 C -0.201 4.201 9 C -0.131 4.131 10 C -0.019 4.019 11 H 0.053 0.947 12 N -0.316 5.316 13 C 0.069 3.931 14 C -0.551 4.551 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.045 0.955 39 H 0.001 0.999 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.439 -4.242 14.201 15.214 hybrid contribution 0.624 0.983 -0.726 1.372 sum -2.815 -3.259 13.475 14.146 Atomic orbital electron populations 1.21812 0.94934 1.01940 1.01024 1.21265 0.96657 0.98538 0.94658 0.92058 1.21585 1.00549 0.95678 0.97329 1.21601 1.00645 0.95257 0.96843 1.20555 0.95492 0.94812 0.95761 1.21840 1.00738 0.95776 1.01254 1.21965 0.95077 1.02017 1.01018 1.21561 1.00819 0.94833 0.95874 1.21472 0.96458 0.94171 0.89797 0.94696 1.60678 1.52714 1.14230 1.03934 1.19557 0.89311 0.97134 0.87082 1.21220 1.09698 1.29969 0.94224 0.92057 1.24991 0.94969 0.95684 0.98980 1.69970 1.17299 1.40646 1.25885 0.86508 0.79284 0.79527 0.82138 1.20786 1.21284 1.19801 0.92332 0.94205 0.91608 0.92559 0.92047 0.91796 0.92786 0.92688 0.93249 0.92898 0.92098 0.93487 0.92744 0.91522 0.92033 0.85632 0.95472 0.99922 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.34 37.16 0.31 -1.63 16 2 C -0.09 -1.35 2.57 -90.62 -0.23 -1.58 16 3 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 4 C -0.11 -1.41 5.18 -26.73 -0.14 -1.55 16 5 C -0.11 -1.27 4.46 -26.73 -0.12 -1.39 16 6 C -0.07 -0.88 0.77 -154.51 -0.12 -1.00 16 7 C -0.14 -1.68 8.47 37.16 0.31 -1.36 16 8 C -0.14 -1.94 7.78 37.16 0.29 -1.66 16 9 C -0.09 -1.55 3.96 -26.73 -0.11 -1.66 16 10 C 0.09 1.63 1.91 -67.70 -0.13 1.50 16 11 H 0.04 0.68 6.09 -51.93 -0.32 0.37 16 12 N -0.69 -14.77 5.58 -107.99 -0.60 -15.37 16 13 C 0.20 5.21 5.24 -4.98 -0.03 5.18 16 14 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 18 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H 0.06 0.81 4.81 -51.93 -0.25 0.56 16 23 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.06 1.01 7.48 -51.93 -0.39 0.62 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 27 H 0.06 0.76 6.43 -51.92 -0.33 0.43 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.13 6.43 -51.93 -0.33 0.79 16 36 H 0.06 1.18 7.45 -51.93 -0.39 0.80 16 37 H 0.33 6.81 8.18 -39.29 -0.32 6.49 16 38 H 0.03 0.78 7.44 -51.93 -0.39 0.40 16 39 H -0.02 -0.48 8.05 -51.93 -0.42 -0.90 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -29.44 296.15 -7.87 -37.30 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.07 Total: 1.85 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.37 Total: -18.72 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.13 Total: -41.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.44 -7.87 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717486849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.241 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds