Wall clock time and date at job start Mon Mar 30 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47298 * 2 1 4 4 C 1.53003 * 109.47459 * 120.00277 * 2 1 3 5 5 C 1.53006 * 109.46987 * 59.99447 * 4 2 1 6 6 C 1.52994 * 109.47304 * 60.00259 * 5 4 2 7 7 C 1.52996 * 109.47271 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47017 * 59.99656 * 6 5 4 9 9 C 1.52998 * 109.47186 * 299.99953 * 6 5 4 10 10 C 1.53000 * 109.46877 * 239.99722 * 2 1 3 11 11 H 1.08999 * 109.47431 * 179.97438 * 10 2 1 12 12 N 1.46910 * 109.47107 * 59.99873 * 10 2 1 13 13 C 1.46895 * 110.99769 * 154.99805 * 12 10 2 14 14 C 1.50702 * 109.46770 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46730 * 299.99872 * 1 2 3 24 24 H 1.09001 * 109.47597 * 59.99878 * 1 2 3 25 25 H 1.08997 * 109.46741 * 300.00066 * 4 2 1 26 26 H 1.08998 * 109.47415 * 179.97438 * 4 2 1 27 27 H 1.09007 * 109.47188 * 299.99823 * 5 4 2 28 28 H 1.09005 * 109.46730 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.47292 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46914 * 299.99747 * 7 6 5 31 31 H 1.08998 * 109.47251 * 60.00224 * 7 6 5 32 32 H 1.08999 * 109.47191 * 300.00286 * 8 6 5 33 33 H 1.09005 * 109.46728 * 59.99735 * 8 6 5 34 34 H 1.09001 * 109.47219 * 179.97438 * 8 6 5 35 35 H 1.08998 * 109.47142 * 299.99657 * 9 6 5 36 36 H 1.08997 * 109.47040 * 179.97438 * 9 6 5 37 37 H 1.00901 * 110.99285 * 31.04987 * 12 10 2 38 38 H 1.09004 * 109.47258 * 60.00516 * 13 12 10 39 39 H 1.08994 * 109.47601 * 300.00108 * 13 12 10 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0398 -2.8851 0.0000 7 6 1.5303 -4.3277 0.0003 8 6 3.5699 -2.8851 -0.0001 9 6 1.5298 -2.1638 -1.2492 10 6 2.0399 -0.7213 -1.2492 11 1 3.1299 -0.7210 -1.2495 12 7 1.5502 -0.0288 -2.4488 13 6 2.4338 -0.2747 -3.5961 14 6 1.9009 0.4504 -4.8050 15 1 0.9964 1.0357 -4.7284 16 6 2.5713 0.3717 -6.0073 17 7 3.6729 -0.3408 -6.1004 18 14 1.9149 1.2767 -7.5037 19 1 2.4980 2.6416 -7.5519 20 1 2.2892 0.5348 -8.7344 21 1 0.4357 1.3732 -7.4145 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 1.6767 -0.2075 2.1392 26 1 3.1300 -0.7217 1.2490 27 1 0.4399 -2.1638 1.2493 28 1 1.8930 -2.6775 2.1394 29 1 1.8939 -4.8417 -0.8895 30 1 1.8940 -4.8413 0.8903 31 1 0.4403 -4.3281 0.0005 32 1 3.9332 -1.8575 -0.0001 33 1 3.9332 -3.3989 0.8899 34 1 3.9332 -3.3994 -0.8899 35 1 0.4398 -2.1638 -1.2492 36 1 1.8934 -2.6774 -2.1392 37 1 1.4459 0.9601 -2.2780 38 1 2.4732 -1.3445 -3.8018 39 1 3.4357 0.0884 -3.3676 40 1 4.1443 -0.3964 -6.9463 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717486849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:57 Heat of formation + Delta-G solvation = -51.864225 kcal Electronic energy + Delta-G solvation = -16612.399299 eV Core-core repulsion = 14231.725664 eV Total energy + Delta-G solvation = -2380.673635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01930 -36.76704 -35.08133 -33.96257 -30.71822 -28.99736 -28.10038 -27.87400 -25.98007 -24.21811 -22.32061 -21.13527 -18.76794 -18.31974 -16.76023 -16.60066 -16.19566 -15.85552 -15.35725 -15.11784 -14.48118 -14.32957 -14.10472 -13.57420 -13.43307 -13.00013 -12.91669 -12.81593 -12.73737 -12.65592 -12.60528 -12.27348 -12.10093 -12.07262 -11.62901 -11.55979 -11.34817 -11.00354 -10.83395 -10.73385 -10.63285 -9.04482 -8.23578 -6.35205 1.39088 1.41282 1.53163 2.38770 3.09258 3.48720 3.76069 3.79832 4.06170 4.22908 4.23889 4.35738 4.47133 4.60489 4.64602 4.69668 4.76805 4.84751 4.96976 4.98410 5.02986 5.05305 5.12418 5.14733 5.18177 5.20949 5.25823 5.29364 5.33028 5.38069 5.56480 5.58047 5.60106 5.62196 5.75758 6.04207 6.50091 6.76006 6.91743 7.36138 8.88087 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.006598 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.207953 B = 4243.002921 C = 4603.205366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.059 0.941 4 C -0.110 4.110 5 C -0.101 4.101 6 C -0.063 4.063 7 C -0.136 4.136 8 C -0.143 4.143 9 C -0.087 4.087 10 C 0.089 3.911 11 H 0.014 0.986 12 N -0.681 5.681 13 C 0.215 3.785 14 C -0.536 4.536 15 H 0.064 0.936 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.264 1.264 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.331 0.669 38 H -0.005 1.005 39 H -0.048 1.048 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 -3.311 16.109 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.138 4.138 6 C -0.063 4.063 7 C -0.194 4.194 8 C -0.200 4.200 9 C -0.125 4.125 10 C -0.021 4.021 11 H 0.032 0.968 12 N -0.312 5.312 13 C 0.087 3.913 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.799 3.201 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.188 1.188 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.149 0.851 38 H 0.013 0.987 39 H -0.031 1.031 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.678 -3.870 15.814 16.939 hybrid contribution 1.039 0.842 -1.202 1.798 sum -3.639 -3.028 14.612 15.359 Atomic orbital electron populations 1.21765 0.93962 1.02141 1.01344 1.21238 0.97369 0.98254 0.93814 0.92209 1.21580 1.00474 0.95997 0.96705 1.21592 1.01087 0.94732 0.96440 1.20551 0.95271 0.95666 0.94858 1.21819 1.01168 0.94612 1.01764 1.21955 0.95331 1.01365 1.01321 1.21503 1.00571 0.94041 0.96390 1.21603 0.95374 0.95113 0.90006 0.96808 1.60595 1.51388 1.14836 1.04334 1.19141 0.88585 0.94674 0.88873 1.21579 1.10048 1.30480 0.95308 0.91752 1.25995 0.95038 0.96356 1.02463 1.70110 1.18595 1.41853 1.26988 0.85306 0.78931 0.78321 0.77577 1.19578 1.20668 1.18830 0.92166 0.91563 0.93597 0.89985 0.92298 0.91044 0.90303 0.94018 0.90928 0.92222 0.93261 0.90848 0.94731 0.91576 0.95929 0.85138 0.98683 1.03057 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.34 71.98 0.60 -2.89 16 2 C -0.09 -2.46 2.57 -10.79 -0.03 -2.49 16 3 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 4 C -0.11 -2.42 5.18 30.60 0.16 -2.27 16 5 C -0.10 -2.10 4.46 30.59 0.14 -1.97 16 6 C -0.06 -1.63 0.77 -52.18 -0.04 -1.67 16 7 C -0.14 -3.07 8.47 71.98 0.61 -2.46 16 8 C -0.14 -3.82 7.78 71.98 0.56 -3.26 16 9 C -0.09 -3.00 3.96 30.60 0.12 -2.88 16 10 C 0.09 3.27 1.91 44.92 0.09 3.36 16 11 H 0.01 0.58 6.09 -2.39 -0.01 0.56 16 12 N -0.68 -30.60 5.58 -495.56 -2.76 -33.36 16 13 C 0.22 12.11 5.24 85.56 0.45 12.56 16 14 C -0.54 -31.69 9.32 25.60 0.24 -31.45 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 17 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 18 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 22 H 0.06 1.53 4.81 -2.39 -0.01 1.52 16 23 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.04 1.36 7.48 -2.39 -0.02 1.34 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.35 6.43 -2.39 -0.02 1.34 16 27 H 0.07 1.42 6.43 -2.38 -0.02 1.41 16 28 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.42 4.81 -2.39 -0.01 1.41 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 2.25 6.43 -2.39 -0.02 2.24 16 36 H 0.02 0.92 7.45 -2.39 -0.02 0.90 16 37 H 0.33 14.22 8.18 -89.69 -0.73 13.48 16 38 H 0.00 -0.31 7.44 -2.38 -0.02 -0.32 16 39 H -0.05 -2.94 8.05 -2.39 -0.02 -2.96 16 40 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -65.48 296.15 3.16 -62.31 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.26 Total: 16.59 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.35 Total: -34.98 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.48 Total: -91.32 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.48 3.16 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717486849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.449 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds