Wall clock time and date at job start Mon Mar 30 2020 02:41:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.47175 * 2 1
4 4 H 1.08996 * 109.47257 * 179.55861 * 3 2 1
5 5 C 1.50696 * 109.47419 * 299.56437 * 3 2 1
6 6 H 1.07997 * 120.00625 * 114.82827 * 5 3 2
7 7 C 1.37879 * 119.99435 * 294.83365 * 5 3 2
8 8 N 1.31507 * 120.00472 * 355.14086 * 7 5 3
9 9 Si 1.86802 * 119.99731 * 175.14074 * 7 5 3
10 10 H 1.48498 * 109.47015 * 269.99837 * 9 7 5
11 11 H 1.48500 * 109.47094 * 29.99691 * 9 7 5
12 12 H 1.48497 * 109.47255 * 149.99703 * 9 7 5
13 13 N 1.46901 * 109.46738 * 59.56171 * 3 2 1
14 14 C 1.46900 * 110.99945 * 188.50736 * 13 3 2
15 15 C 1.46901 * 111.00239 * 64.55279 * 13 3 2
16 16 C 1.53003 * 109.47158 * 196.23862 * 15 13 3
17 17 C 1.53001 * 112.84856 * 48.80547 * 16 15 13
18 18 C 1.53774 * 113.61570 * 277.49483 * 16 15 13
19 19 C 1.53775 * 87.08306 * 220.02074 * 18 16 15
20 20 C 1.53778 * 87.08229 * 25.43357 * 19 18 16
21 21 H 1.09003 * 109.46733 * 185.03684 * 1 2 3
22 22 H 1.08993 * 109.47092 * 305.03225 * 1 2 3
23 23 H 1.08998 * 109.47285 * 65.03774 * 1 2 3
24 24 H 1.09002 * 109.46930 * 240.00288 * 2 1 3
25 25 H 1.09000 * 109.47120 * 120.00493 * 2 1 3
26 26 H 0.97003 * 119.99854 * 354.55454 * 8 7 5
27 27 H 1.08997 * 109.47149 * 59.99778 * 14 13 3
28 28 H 1.09007 * 109.46939 * 180.02562 * 14 13 3
29 29 H 1.09001 * 109.47111 * 299.99675 * 14 13 3
30 30 H 1.09007 * 109.47101 * 316.23691 * 15 13 3
31 31 H 1.09000 * 109.47008 * 76.24054 * 15 13 3
32 32 H 1.09001 * 109.47266 * 69.66570 * 17 16 15
33 33 H 1.08999 * 109.46884 * 189.66319 * 17 16 15
34 34 H 1.08994 * 109.46841 * 309.66288 * 17 16 15
35 35 H 1.09004 * 113.61715 * 334.57040 * 18 16 15
36 36 H 1.08998 * 113.61423 * 105.46830 * 18 16 15
37 37 H 1.09005 * 113.61530 * 270.88413 * 19 18 16
38 38 H 1.09001 * 113.61418 * 139.98021 * 19 18 16
39 39 H 1.08998 * 113.61337 * 220.02188 * 20 19 18
40 40 H 1.08999 * 113.61331 * 89.11590 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1300 1.4425 0.0079
5 6 1.5466 2.1498 -1.2358
6 1 0.8580 2.9769 -1.1460
7 6 1.9742 1.7408 -2.4811
8 7 2.8846 0.7978 -2.5869
9 14 1.2603 2.5264 -4.0182
10 1 0.0625 1.7639 -4.4531
11 1 0.8736 3.9295 -3.7231
12 1 2.2771 2.5103 -5.1003
13 7 1.5417 2.1380 1.1941
14 6 1.8404 3.5748 1.1296
15 6 2.0907 1.5407 2.4188
16 6 1.2660 1.9984 3.6235
17 6 -0.2402 1.8379 3.4079
18 6 1.6699 3.3832 4.1563
19 6 1.4749 2.8094 5.5696
20 6 1.7610 1.4259 4.9622
21 1 -0.3633 -1.0238 0.0902
22 1 -0.3633 0.5899 0.8414
23 1 -0.3634 0.4337 -0.9316
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5139 0.8899
26 1 3.3127 0.4454 -1.7909
27 1 1.3633 4.0059 0.2494
28 1 1.4610 4.0654 2.0260
29 1 2.9189 3.7192 1.0656
30 1 2.0505 0.4540 2.3427
31 1 3.1258 1.8581 2.5454
32 1 -0.4950 0.7782 3.3974
33 1 -0.7778 2.3328 4.2167
34 1 -0.5210 2.2886 2.4560
35 1 2.7022 3.6529 3.9331
36 1 0.9613 4.1719 3.9036
37 1 0.4587 2.9182 5.9487
38 1 2.2312 3.1381 6.2825
39 1 1.1259 0.6345 5.3602
40 1 2.8182 1.1605 4.9594
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000720671325.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:29
Heat of formation + Delta-G solvation = 12.074745 kcal
Electronic energy + Delta-G solvation = -16942.107606 eV
Core-core repulsion = 14564.206572 eV
Total energy + Delta-G solvation = -2377.901033 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.57119 -36.77662 -33.07039 -30.92072 -29.43324 -26.91445 -26.20146 -25.17511
-24.23563 -22.80459 -21.17137 -19.05337 -17.96679 -16.57724 -15.28930 -15.07902
-14.93424 -13.87054 -13.69804 -13.52487 -13.08274 -12.57520 -12.44300 -12.08669
-11.87245 -11.65488 -11.52070 -11.28982 -11.07049 -10.78685 -10.72606 -10.66415
-10.25929 -10.18941 -10.08952 -9.94179 -9.83775 -9.57039 -9.34220 -8.37410
-8.29909 -7.14815 -6.28227 -3.99098 3.46030 3.48181 3.63912 4.53708
4.73561 4.83639 4.89573 5.01320 5.24001 5.42782 5.61657 5.77181
5.81365 5.88351 5.99633 6.05665 6.09668 6.18316 6.20641 6.27947
6.36044 6.39371 6.44980 6.46914 6.56610 6.64612 6.68559 6.86968
6.90532 7.01452 7.17115 7.28382 7.46680 7.56549 7.94814 8.11958
8.47521 8.65797 8.93328 9.70162 11.07334
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.042754 B = 0.007543 C = 0.007187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 654.744985 B = 3711.323814 C = 3894.998224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.112 4.112
3 C 0.203 3.797
4 H -0.015 1.015
5 C -0.577 4.577
6 H 0.057 0.943
7 C 0.019 3.981
8 N -0.916 5.916
9 Si 1.066 2.934
10 H -0.288 1.288
11 H -0.290 1.290
12 H -0.287 1.287
13 N -0.521 5.521
14 C 0.036 3.964
15 C 0.064 3.936
16 C -0.071 4.071
17 C -0.116 4.116
18 C -0.131 4.131
19 C -0.142 4.142
20 C -0.135 4.135
21 H 0.016 0.984
22 H 0.054 0.946
23 H 0.056 0.944
24 H 0.063 0.937
25 H 0.020 0.980
26 H 0.269 0.731
27 H 0.074 0.926
28 H 0.050 0.950
29 H 0.006 0.994
30 H 0.069 0.931
31 H 0.019 0.981
32 H 0.049 0.951
33 H 0.040 0.960
34 H 0.079 0.921
35 H 0.074 0.926
36 H 0.065 0.935
37 H 0.076 0.924
38 H 0.059 0.941
39 H 0.063 0.937
40 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.239 2.500 12.239 12.904
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.151 4.151
3 C 0.097 3.903
4 H 0.003 0.997
5 C -0.616 4.616
6 H 0.075 0.925
7 C -0.184 4.184
8 N -0.553 5.553
9 Si 0.895 3.105
10 H -0.215 1.215
11 H -0.216 1.216
12 H -0.213 1.213
13 N -0.245 5.245
14 C -0.113 4.113
15 C -0.065 4.065
16 C -0.071 4.071
17 C -0.173 4.173
18 C -0.168 4.168
19 C -0.179 4.179
20 C -0.173 4.173
21 H 0.035 0.965
22 H 0.073 0.927
23 H 0.075 0.925
24 H 0.081 0.919
25 H 0.039 0.961
26 H 0.081 0.919
27 H 0.092 0.908
28 H 0.069 0.931
29 H 0.024 0.976
30 H 0.087 0.913
31 H 0.037 0.963
32 H 0.068 0.932
33 H 0.059 0.941
34 H 0.098 0.902
35 H 0.093 0.907
36 H 0.084 0.916
37 H 0.095 0.905
38 H 0.078 0.922
39 H 0.082 0.918
40 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -3.729 2.378 10.571 11.459
hybrid contribution 1.041 0.099 1.647 1.951
sum -2.688 2.476 12.218 12.753
Atomic orbital electron populations
1.21446 0.96356 0.97554 1.02421 1.21595 0.96475 0.98276 0.98709
1.19368 0.92004 0.91035 0.87933 0.99729 1.21911 1.29781 1.18604
0.91262 0.92451 1.25681 0.95776 0.95777 1.01198 1.70745 1.24846
1.26314 1.33392 0.83582 0.75929 0.75419 0.75533 1.21479 1.21589
1.21318 1.61950 1.58620 1.02352 1.01581 1.22329 0.97611 0.90034
1.01304 1.22077 0.94303 0.99591 0.90504 1.21783 0.96638 0.95488
0.93216 1.21438 0.92592 1.01165 1.02083 1.23057 1.01154 0.97151
0.95469 1.22809 1.01128 0.97226 0.96734 1.23001 1.00925 0.96578
0.96838 0.96524 0.92669 0.92481 0.91862 0.96111 0.91917 0.90782
0.93126 0.97589 0.91262 0.96321 0.93167 0.94145 0.90233 0.90738
0.91584 0.90542 0.92214 0.91843 0.90672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.62 9.49 37.16 0.35 -2.27 16
2 C -0.11 -2.63 5.18 -26.73 -0.14 -2.77 16
3 C 0.20 5.02 1.40 -68.87 -0.10 4.92 16
4 H -0.01 -0.41 7.54 -51.93 -0.39 -0.80 16
5 C -0.58 -15.58 6.59 -34.44 -0.23 -15.81 16
6 H 0.06 1.57 6.30 -52.49 -0.33 1.24 16
7 C 0.02 0.54 5.27 -17.82 -0.09 0.45 16
8 N -0.92 -27.16 12.85 55.43 0.71 -26.45 16
9 Si 1.07 25.12 29.91 -169.99 -5.08 20.03 16
10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16
11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16
12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
13 N -0.52 -10.88 2.60 -236.28 -0.61 -11.50 16
14 C 0.04 0.71 8.81 60.06 0.53 1.24 16
15 C 0.06 1.16 4.43 -3.82 -0.02 1.15 16
16 C -0.07 -1.05 0.94 -153.70 -0.14 -1.20 16
17 C -0.12 -1.71 8.74 37.16 0.32 -1.39 16
18 C -0.13 -1.77 5.13 -25.93 -0.13 -1.90 16
19 C -0.14 -1.64 7.73 -25.92 -0.20 -1.84 16
20 C -0.14 -1.72 7.23 -25.92 -0.19 -1.91 16
21 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
22 H 0.05 1.15 7.06 -51.93 -0.37 0.78 16
23 H 0.06 1.35 7.41 -51.93 -0.39 0.96 16
24 H 0.06 1.64 6.21 -51.93 -0.32 1.32 16
25 H 0.02 0.45 6.24 -51.93 -0.32 0.12 16
26 H 0.27 8.01 6.04 -40.82 -0.25 7.76 16
27 H 0.07 1.60 6.09 -51.93 -0.32 1.29 16
28 H 0.05 0.87 5.05 -51.92 -0.26 0.61 16
29 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16
30 H 0.07 1.31 5.86 -51.92 -0.30 1.01 16
31 H 0.02 0.35 7.85 -51.93 -0.41 -0.06 16
32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
33 H 0.04 0.52 7.34 -51.93 -0.38 0.14 16
34 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16
35 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16
36 H 0.07 0.89 7.40 -51.93 -0.38 0.50 16
37 H 0.08 0.83 7.64 -51.93 -0.40 0.44 16
38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16
40 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16
LS Contribution 295.45 15.07 4.45 4.45
Total: -1.00 -28.14 295.45 -7.49 -35.63
By element:
Atomic # 1 Polarization: 6.09 SS G_CDS: -6.93 Total: -0.84 kcal
Atomic # 6 Polarization: -21.30 SS G_CDS: -0.03 Total: -21.33 kcal
Atomic # 7 Polarization: -38.05 SS G_CDS: 0.10 Total: -37.95 kcal
Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.03 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -28.14 -7.49 -35.63 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720671325.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal
(2) G-P(sol) polarization free energy of solvation -28.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds