Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 H 1.08996 * 109.47257 * 179.55861 * 3 2 1 5 5 C 1.50696 * 109.47419 * 299.56437 * 3 2 1 6 6 H 1.07997 * 120.00625 * 114.82827 * 5 3 2 7 7 C 1.37879 * 119.99435 * 294.83365 * 5 3 2 8 8 N 1.31507 * 120.00472 * 355.14086 * 7 5 3 9 9 Si 1.86802 * 119.99731 * 175.14074 * 7 5 3 10 10 H 1.48498 * 109.47015 * 269.99837 * 9 7 5 11 11 H 1.48500 * 109.47094 * 29.99691 * 9 7 5 12 12 H 1.48497 * 109.47255 * 149.99703 * 9 7 5 13 13 N 1.46901 * 109.46738 * 59.56171 * 3 2 1 14 14 C 1.46900 * 110.99945 * 188.50736 * 13 3 2 15 15 C 1.46901 * 111.00239 * 64.55279 * 13 3 2 16 16 C 1.53003 * 109.47158 * 196.23862 * 15 13 3 17 17 C 1.53001 * 112.84856 * 48.80547 * 16 15 13 18 18 C 1.53774 * 113.61570 * 277.49483 * 16 15 13 19 19 C 1.53775 * 87.08306 * 220.02074 * 18 16 15 20 20 C 1.53778 * 87.08229 * 25.43357 * 19 18 16 21 21 H 1.09003 * 109.46733 * 185.03684 * 1 2 3 22 22 H 1.08993 * 109.47092 * 305.03225 * 1 2 3 23 23 H 1.08998 * 109.47285 * 65.03774 * 1 2 3 24 24 H 1.09002 * 109.46930 * 240.00288 * 2 1 3 25 25 H 1.09000 * 109.47120 * 120.00493 * 2 1 3 26 26 H 0.97003 * 119.99854 * 354.55454 * 8 7 5 27 27 H 1.08997 * 109.47149 * 59.99778 * 14 13 3 28 28 H 1.09007 * 109.46939 * 180.02562 * 14 13 3 29 29 H 1.09001 * 109.47111 * 299.99675 * 14 13 3 30 30 H 1.09007 * 109.47101 * 316.23691 * 15 13 3 31 31 H 1.09000 * 109.47008 * 76.24054 * 15 13 3 32 32 H 1.09001 * 109.47266 * 69.66570 * 17 16 15 33 33 H 1.08999 * 109.46884 * 189.66319 * 17 16 15 34 34 H 1.08994 * 109.46841 * 309.66288 * 17 16 15 35 35 H 1.09004 * 113.61715 * 334.57040 * 18 16 15 36 36 H 1.08998 * 113.61423 * 105.46830 * 18 16 15 37 37 H 1.09005 * 113.61530 * 270.88413 * 19 18 16 38 38 H 1.09001 * 113.61418 * 139.98021 * 19 18 16 39 39 H 1.08998 * 113.61337 * 220.02188 * 20 19 18 40 40 H 1.08999 * 113.61331 * 89.11590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0079 5 6 1.5466 2.1498 -1.2358 6 1 0.8580 2.9769 -1.1460 7 6 1.9742 1.7408 -2.4811 8 7 2.8846 0.7978 -2.5869 9 14 1.2603 2.5264 -4.0182 10 1 0.0625 1.7639 -4.4531 11 1 0.8736 3.9295 -3.7231 12 1 2.2771 2.5103 -5.1003 13 7 1.5417 2.1380 1.1941 14 6 1.8404 3.5748 1.1296 15 6 2.0907 1.5407 2.4188 16 6 1.2660 1.9984 3.6235 17 6 -0.2402 1.8379 3.4079 18 6 1.6699 3.3832 4.1563 19 6 1.4749 2.8094 5.5696 20 6 1.7610 1.4259 4.9622 21 1 -0.3633 -1.0238 0.0902 22 1 -0.3633 0.5899 0.8414 23 1 -0.3634 0.4337 -0.9316 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3127 0.4454 -1.7909 27 1 1.3633 4.0059 0.2494 28 1 1.4610 4.0654 2.0260 29 1 2.9189 3.7192 1.0656 30 1 2.0505 0.4540 2.3427 31 1 3.1258 1.8581 2.5454 32 1 -0.4950 0.7782 3.3974 33 1 -0.7778 2.3328 4.2167 34 1 -0.5210 2.2886 2.4560 35 1 2.7022 3.6529 3.9331 36 1 0.9613 4.1719 3.9036 37 1 0.4587 2.9182 5.9487 38 1 2.2312 3.1381 6.2825 39 1 1.1259 0.6345 5.3602 40 1 2.8182 1.1605 4.9594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720671325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = 12.074745 kcal Electronic energy + Delta-G solvation = -16942.107606 eV Core-core repulsion = 14564.206572 eV Total energy + Delta-G solvation = -2377.901033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57119 -36.77662 -33.07039 -30.92072 -29.43324 -26.91445 -26.20146 -25.17511 -24.23563 -22.80459 -21.17137 -19.05337 -17.96679 -16.57724 -15.28930 -15.07902 -14.93424 -13.87054 -13.69804 -13.52487 -13.08274 -12.57520 -12.44300 -12.08669 -11.87245 -11.65488 -11.52070 -11.28982 -11.07049 -10.78685 -10.72606 -10.66415 -10.25929 -10.18941 -10.08952 -9.94179 -9.83775 -9.57039 -9.34220 -8.37410 -8.29909 -7.14815 -6.28227 -3.99098 3.46030 3.48181 3.63912 4.53708 4.73561 4.83639 4.89573 5.01320 5.24001 5.42782 5.61657 5.77181 5.81365 5.88351 5.99633 6.05665 6.09668 6.18316 6.20641 6.27947 6.36044 6.39371 6.44980 6.46914 6.56610 6.64612 6.68559 6.86968 6.90532 7.01452 7.17115 7.28382 7.46680 7.56549 7.94814 8.11958 8.47521 8.65797 8.93328 9.70162 11.07334 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042754 B = 0.007543 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.744985 B = 3711.323814 C = 3894.998224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.203 3.797 4 H -0.015 1.015 5 C -0.577 4.577 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.521 5.521 14 C 0.036 3.964 15 C 0.064 3.936 16 C -0.071 4.071 17 C -0.116 4.116 18 C -0.131 4.131 19 C -0.142 4.142 20 C -0.135 4.135 21 H 0.016 0.984 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.269 0.731 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.069 0.931 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 2.500 12.239 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.097 3.903 4 H 0.003 0.997 5 C -0.616 4.616 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.245 5.245 14 C -0.113 4.113 15 C -0.065 4.065 16 C -0.071 4.071 17 C -0.173 4.173 18 C -0.168 4.168 19 C -0.179 4.179 20 C -0.173 4.173 21 H 0.035 0.965 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.729 2.378 10.571 11.459 hybrid contribution 1.041 0.099 1.647 1.951 sum -2.688 2.476 12.218 12.753 Atomic orbital electron populations 1.21446 0.96356 0.97554 1.02421 1.21595 0.96475 0.98276 0.98709 1.19368 0.92004 0.91035 0.87933 0.99729 1.21911 1.29781 1.18604 0.91262 0.92451 1.25681 0.95776 0.95777 1.01198 1.70745 1.24846 1.26314 1.33392 0.83582 0.75929 0.75419 0.75533 1.21479 1.21589 1.21318 1.61950 1.58620 1.02352 1.01581 1.22329 0.97611 0.90034 1.01304 1.22077 0.94303 0.99591 0.90504 1.21783 0.96638 0.95488 0.93216 1.21438 0.92592 1.01165 1.02083 1.23057 1.01154 0.97151 0.95469 1.22809 1.01128 0.97226 0.96734 1.23001 1.00925 0.96578 0.96838 0.96524 0.92669 0.92481 0.91862 0.96111 0.91917 0.90782 0.93126 0.97589 0.91262 0.96321 0.93167 0.94145 0.90233 0.90738 0.91584 0.90542 0.92214 0.91843 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.49 37.16 0.35 -2.27 16 2 C -0.11 -2.63 5.18 -26.73 -0.14 -2.77 16 3 C 0.20 5.02 1.40 -68.87 -0.10 4.92 16 4 H -0.01 -0.41 7.54 -51.93 -0.39 -0.80 16 5 C -0.58 -15.58 6.59 -34.44 -0.23 -15.81 16 6 H 0.06 1.57 6.30 -52.49 -0.33 1.24 16 7 C 0.02 0.54 5.27 -17.82 -0.09 0.45 16 8 N -0.92 -27.16 12.85 55.43 0.71 -26.45 16 9 Si 1.07 25.12 29.91 -169.99 -5.08 20.03 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.52 -10.88 2.60 -236.28 -0.61 -11.50 16 14 C 0.04 0.71 8.81 60.06 0.53 1.24 16 15 C 0.06 1.16 4.43 -3.82 -0.02 1.15 16 16 C -0.07 -1.05 0.94 -153.70 -0.14 -1.20 16 17 C -0.12 -1.71 8.74 37.16 0.32 -1.39 16 18 C -0.13 -1.77 5.13 -25.93 -0.13 -1.90 16 19 C -0.14 -1.64 7.73 -25.92 -0.20 -1.84 16 20 C -0.14 -1.72 7.23 -25.92 -0.19 -1.91 16 21 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.05 1.15 7.06 -51.93 -0.37 0.78 16 23 H 0.06 1.35 7.41 -51.93 -0.39 0.96 16 24 H 0.06 1.64 6.21 -51.93 -0.32 1.32 16 25 H 0.02 0.45 6.24 -51.93 -0.32 0.12 16 26 H 0.27 8.01 6.04 -40.82 -0.25 7.76 16 27 H 0.07 1.60 6.09 -51.93 -0.32 1.29 16 28 H 0.05 0.87 5.05 -51.92 -0.26 0.61 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 1.31 5.86 -51.92 -0.30 1.01 16 31 H 0.02 0.35 7.85 -51.93 -0.41 -0.06 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.52 7.34 -51.93 -0.38 0.14 16 34 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 35 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16 36 H 0.07 0.89 7.40 -51.93 -0.38 0.50 16 37 H 0.08 0.83 7.64 -51.93 -0.40 0.44 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -28.14 295.45 -7.49 -35.63 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.93 Total: -0.84 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -0.03 Total: -21.33 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.10 Total: -37.95 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.14 -7.49 -35.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720671325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds