Wall clock time and date at job start Mon Mar 30 2020 02:41:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.47175 * 2 1
4 4 H 1.08996 * 109.47257 * 179.55861 * 3 2 1
5 5 C 1.50696 * 109.47419 * 299.56437 * 3 2 1
6 6 H 1.07997 * 120.00625 * 114.82827 * 5 3 2
7 7 C 1.37879 * 119.99435 * 294.83365 * 5 3 2
8 8 N 1.31507 * 120.00472 * 355.14086 * 7 5 3
9 9 Si 1.86802 * 119.99731 * 175.14074 * 7 5 3
10 10 H 1.48498 * 109.47015 * 269.99837 * 9 7 5
11 11 H 1.48500 * 109.47094 * 29.99691 * 9 7 5
12 12 H 1.48497 * 109.47255 * 149.99703 * 9 7 5
13 13 N 1.46901 * 109.46738 * 59.56171 * 3 2 1
14 14 C 1.46900 * 110.99945 * 188.50736 * 13 3 2
15 15 C 1.46901 * 111.00239 * 64.55279 * 13 3 2
16 16 C 1.53003 * 109.47158 * 196.23862 * 15 13 3
17 17 C 1.53001 * 112.84856 * 48.80547 * 16 15 13
18 18 C 1.53774 * 113.61570 * 277.49483 * 16 15 13
19 19 C 1.53775 * 87.08306 * 220.02074 * 18 16 15
20 20 C 1.53778 * 87.08229 * 25.43357 * 19 18 16
21 21 H 1.09003 * 109.46733 * 185.03684 * 1 2 3
22 22 H 1.08993 * 109.47092 * 305.03225 * 1 2 3
23 23 H 1.08998 * 109.47285 * 65.03774 * 1 2 3
24 24 H 1.09002 * 109.46930 * 240.00288 * 2 1 3
25 25 H 1.09000 * 109.47120 * 120.00493 * 2 1 3
26 26 H 0.97003 * 119.99854 * 354.55454 * 8 7 5
27 27 H 1.08997 * 109.47149 * 59.99778 * 14 13 3
28 28 H 1.09007 * 109.46939 * 180.02562 * 14 13 3
29 29 H 1.09001 * 109.47111 * 299.99675 * 14 13 3
30 30 H 1.09007 * 109.47101 * 316.23691 * 15 13 3
31 31 H 1.09000 * 109.47008 * 76.24054 * 15 13 3
32 32 H 1.09001 * 109.47266 * 69.66570 * 17 16 15
33 33 H 1.08999 * 109.46884 * 189.66319 * 17 16 15
34 34 H 1.08994 * 109.46841 * 309.66288 * 17 16 15
35 35 H 1.09004 * 113.61715 * 334.57040 * 18 16 15
36 36 H 1.08998 * 113.61423 * 105.46830 * 18 16 15
37 37 H 1.09005 * 113.61530 * 270.88413 * 19 18 16
38 38 H 1.09001 * 113.61418 * 139.98021 * 19 18 16
39 39 H 1.08998 * 113.61337 * 220.02188 * 20 19 18
40 40 H 1.08999 * 113.61331 * 89.11590 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1300 1.4425 0.0079
5 6 1.5466 2.1498 -1.2358
6 1 0.8580 2.9769 -1.1460
7 6 1.9742 1.7408 -2.4811
8 7 2.8846 0.7978 -2.5869
9 14 1.2603 2.5264 -4.0182
10 1 0.0625 1.7639 -4.4531
11 1 0.8736 3.9295 -3.7231
12 1 2.2771 2.5103 -5.1003
13 7 1.5417 2.1380 1.1941
14 6 1.8404 3.5748 1.1296
15 6 2.0907 1.5407 2.4188
16 6 1.2660 1.9984 3.6235
17 6 -0.2402 1.8379 3.4079
18 6 1.6699 3.3832 4.1563
19 6 1.4749 2.8094 5.5696
20 6 1.7610 1.4259 4.9622
21 1 -0.3633 -1.0238 0.0902
22 1 -0.3633 0.5899 0.8414
23 1 -0.3634 0.4337 -0.9316
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5139 0.8899
26 1 3.3127 0.4454 -1.7909
27 1 1.3633 4.0059 0.2494
28 1 1.4610 4.0654 2.0260
29 1 2.9189 3.7192 1.0656
30 1 2.0505 0.4540 2.3427
31 1 3.1258 1.8581 2.5454
32 1 -0.4950 0.7782 3.3974
33 1 -0.7778 2.3328 4.2167
34 1 -0.5210 2.2886 2.4560
35 1 2.7022 3.6529 3.9331
36 1 0.9613 4.1719 3.9036
37 1 0.4587 2.9182 5.9487
38 1 2.2312 3.1381 6.2825
39 1 1.1259 0.6345 5.3602
40 1 2.8182 1.1605 4.9594
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000720671325.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:29
Heat of formation + Delta-G solvation = -2.447620 kcal
Electronic energy + Delta-G solvation = -16942.737343 eV
Core-core repulsion = 14564.206572 eV
Total energy + Delta-G solvation = -2378.530770 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.81277 -38.48782 -34.97871 -32.87088 -30.71651 -28.39272 -27.96931 -26.36115
-26.01853 -24.47888 -22.61826 -20.90027 -19.16892 -18.53562 -16.90437 -16.47495
-16.34957 -15.60328 -15.40185 -15.16205 -14.49772 -14.16779 -13.99517 -13.64058
-13.38654 -13.10182 -12.92726 -12.81028 -12.65589 -12.51893 -12.39700 -12.04207
-11.95413 -11.90550 -11.70816 -11.53606 -11.30856 -10.90222 -10.73812 -10.47495
-10.31196 -8.93789 -8.52022 -6.22761 1.53818 1.61588 1.78263 2.58869
3.22676 3.30660 3.69824 3.78920 3.94949 4.01370 4.32468 4.35962
4.52665 4.57044 4.61506 4.62757 4.76017 4.81283 4.83992 4.88366
4.95859 5.04435 5.07444 5.12010 5.13960 5.14913 5.25632 5.27306
5.36933 5.43030 5.53038 5.57164 5.70415 5.78727 5.98988 6.11484
6.52441 6.58132 6.81576 7.54690 8.83583
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.042754 B = 0.007543 C = 0.007187
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 654.744985 B = 3711.323814 C = 3894.998224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.106 4.106
3 C 0.207 3.793
4 H -0.056 1.056
5 C -0.577 4.577
6 H 0.053 0.947
7 C -0.030 4.030
8 N -0.941 5.941
9 Si 1.110 2.890
10 H -0.276 1.276
11 H -0.272 1.272
12 H -0.289 1.289
13 N -0.517 5.517
14 C 0.042 3.958
15 C 0.065 3.935
16 C -0.077 4.077
17 C -0.111 4.111
18 C -0.134 4.134
19 C -0.126 4.126
20 C -0.131 4.131
21 H 0.040 0.960
22 H 0.065 0.935
23 H 0.033 0.967
24 H 0.033 0.967
25 H 0.037 0.963
26 H 0.256 0.744
27 H 0.055 0.945
28 H 0.083 0.917
29 H -0.008 1.008
30 H 0.060 0.940
31 H 0.009 0.991
32 H 0.049 0.951
33 H 0.063 0.937
34 H 0.055 0.945
35 H 0.066 0.934
36 H 0.068 0.932
37 H 0.090 0.910
38 H 0.074 0.926
39 H 0.074 0.926
40 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.683 3.109 13.985 15.072
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.145 4.145
3 C 0.099 3.901
4 H -0.039 1.039
5 C -0.615 4.615
6 H 0.071 0.929
7 C -0.228 4.228
8 N -0.580 5.580
9 Si 0.933 3.067
10 H -0.202 1.202
11 H -0.197 1.197
12 H -0.215 1.215
13 N -0.240 5.240
14 C -0.107 4.107
15 C -0.063 4.063
16 C -0.078 4.078
17 C -0.168 4.168
18 C -0.172 4.172
19 C -0.163 4.163
20 C -0.169 4.169
21 H 0.059 0.941
22 H 0.083 0.917
23 H 0.052 0.948
24 H 0.052 0.948
25 H 0.055 0.945
26 H 0.066 0.934
27 H 0.074 0.926
28 H 0.101 0.899
29 H 0.011 0.989
30 H 0.078 0.922
31 H 0.027 0.973
32 H 0.068 0.932
33 H 0.082 0.918
34 H 0.074 0.926
35 H 0.085 0.915
36 H 0.087 0.913
37 H 0.109 0.891
38 H 0.092 0.908
39 H 0.093 0.907
40 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -5.183 2.993 12.349 13.723
hybrid contribution 1.526 -0.086 1.172 1.927
sum -3.656 2.907 13.522 14.306
Atomic orbital electron populations
1.21325 0.94617 0.99120 1.01543 1.21470 0.97839 0.97137 0.98006
1.19214 0.89514 0.92208 0.89152 1.03888 1.22148 1.28891 1.18217
0.92249 0.92865 1.26995 0.95557 0.95669 1.04532 1.70862 1.26424
1.28003 1.32689 0.83016 0.75611 0.75713 0.72360 1.20158 1.19690
1.21542 1.61955 1.58251 1.02583 1.01250 1.22298 0.96640 0.89715
1.02015 1.22155 0.94565 0.98903 0.90653 1.21847 0.96327 0.97125
0.92470 1.21374 0.92477 1.01213 1.01706 1.23059 1.00751 0.96314
0.97061 1.22753 1.02449 0.95486 0.95643 1.22986 1.01033 0.97766
0.95099 0.94064 0.91652 0.94757 0.94838 0.94496 0.93371 0.92643
0.89885 0.98938 0.92192 0.97264 0.93216 0.91767 0.92595 0.91487
0.91310 0.89102 0.90765 0.90715 0.90798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.65 9.49 71.98 0.68 -3.97 16
2 C -0.11 -5.06 5.18 30.59 0.16 -4.90 16
3 C 0.21 10.49 1.40 44.17 0.06 10.55 16
4 H -0.06 -3.27 7.54 -2.39 -0.02 -3.28 16
5 C -0.58 -31.74 6.59 25.60 0.17 -31.57 16
6 H 0.05 2.94 6.30 -2.91 -0.02 2.92 16
7 C -0.03 -1.69 5.27 84.66 0.45 -1.25 16
8 N -0.94 -57.51 12.85 21.45 0.28 -57.24 16
9 Si 1.11 50.74 29.91 68.60 2.05 52.80 16
10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16
11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16
13 N -0.52 -21.65 2.60 -901.45 -2.35 -23.99 16
14 C 0.04 1.66 8.81 127.69 1.12 2.79 16
15 C 0.07 2.35 4.43 86.30 0.38 2.73 16
16 C -0.08 -2.13 0.94 -51.66 -0.05 -2.18 16
17 C -0.11 -2.98 8.74 71.98 0.63 -2.35 16
18 C -0.13 -3.28 5.13 31.12 0.16 -3.12 16
19 C -0.13 -2.44 7.73 31.12 0.24 -2.20 16
20 C -0.13 -2.94 7.23 31.12 0.23 -2.71 16
21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16
22 H 0.06 2.64 7.06 -2.39 -0.02 2.62 16
23 H 0.03 1.59 7.41 -2.39 -0.02 1.58 16
24 H 0.03 1.78 6.21 -2.39 -0.01 1.77 16
25 H 0.04 1.61 6.24 -2.39 -0.01 1.59 16
26 H 0.26 15.94 6.04 -92.71 -0.56 15.38 16
27 H 0.05 2.41 6.09 -2.39 -0.01 2.39 16
28 H 0.08 2.76 5.05 -2.38 -0.01 2.74 16
29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16
30 H 0.06 2.24 5.86 -2.38 -0.01 2.23 16
31 H 0.01 0.35 7.85 -2.39 -0.02 0.33 16
32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.06 1.42 7.34 -2.39 -0.02 1.41 16
34 H 0.06 1.78 7.08 -2.39 -0.02 1.76 16
35 H 0.07 1.74 7.96 -2.39 -0.02 1.72 16
36 H 0.07 1.64 7.40 -2.39 -0.02 1.62 16
37 H 0.09 1.55 7.64 -2.38 -0.02 1.53 16
38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
39 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16
40 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16
Total: -1.00 -61.53 295.45 5.41 -56.12
By element:
Atomic # 1 Polarization: 9.29 SS G_CDS: 1.19 Total: 10.49 kcal
Atomic # 6 Polarization: -42.41 SS G_CDS: 4.23 Total: -38.18 kcal
Atomic # 7 Polarization: -79.16 SS G_CDS: -2.07 Total: -81.23 kcal
Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.80 kcal
Total: -61.53 5.41 -56.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720671325.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.676 kcal
(2) G-P(sol) polarization free energy of solvation -61.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.123 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds