Wall clock time and date at job start Mon Mar 30 2020 02:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 H 1.08996 * 109.47257 * 179.55861 * 3 2 1 5 5 C 1.50696 * 109.47419 * 299.56437 * 3 2 1 6 6 H 1.07997 * 120.00625 * 114.82827 * 5 3 2 7 7 C 1.37879 * 119.99435 * 294.83365 * 5 3 2 8 8 N 1.31507 * 120.00472 * 355.14086 * 7 5 3 9 9 Si 1.86802 * 119.99731 * 175.14074 * 7 5 3 10 10 H 1.48498 * 109.47015 * 269.99837 * 9 7 5 11 11 H 1.48500 * 109.47094 * 29.99691 * 9 7 5 12 12 H 1.48497 * 109.47255 * 149.99703 * 9 7 5 13 13 N 1.46901 * 109.46738 * 59.56171 * 3 2 1 14 14 C 1.46900 * 110.99945 * 188.50736 * 13 3 2 15 15 C 1.46901 * 111.00239 * 64.55279 * 13 3 2 16 16 C 1.53003 * 109.47158 * 196.23862 * 15 13 3 17 17 C 1.53001 * 112.84856 * 48.80547 * 16 15 13 18 18 C 1.53774 * 113.61570 * 277.49483 * 16 15 13 19 19 C 1.53775 * 87.08306 * 220.02074 * 18 16 15 20 20 C 1.53778 * 87.08229 * 25.43357 * 19 18 16 21 21 H 1.09003 * 109.46733 * 185.03684 * 1 2 3 22 22 H 1.08993 * 109.47092 * 305.03225 * 1 2 3 23 23 H 1.08998 * 109.47285 * 65.03774 * 1 2 3 24 24 H 1.09002 * 109.46930 * 240.00288 * 2 1 3 25 25 H 1.09000 * 109.47120 * 120.00493 * 2 1 3 26 26 H 0.97003 * 119.99854 * 354.55454 * 8 7 5 27 27 H 1.08997 * 109.47149 * 59.99778 * 14 13 3 28 28 H 1.09007 * 109.46939 * 180.02562 * 14 13 3 29 29 H 1.09001 * 109.47111 * 299.99675 * 14 13 3 30 30 H 1.09007 * 109.47101 * 316.23691 * 15 13 3 31 31 H 1.09000 * 109.47008 * 76.24054 * 15 13 3 32 32 H 1.09001 * 109.47266 * 69.66570 * 17 16 15 33 33 H 1.08999 * 109.46884 * 189.66319 * 17 16 15 34 34 H 1.08994 * 109.46841 * 309.66288 * 17 16 15 35 35 H 1.09004 * 113.61715 * 334.57040 * 18 16 15 36 36 H 1.08998 * 113.61423 * 105.46830 * 18 16 15 37 37 H 1.09005 * 113.61530 * 270.88413 * 19 18 16 38 38 H 1.09001 * 113.61418 * 139.98021 * 19 18 16 39 39 H 1.08998 * 113.61337 * 220.02188 * 20 19 18 40 40 H 1.08999 * 113.61331 * 89.11590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0079 5 6 1.5466 2.1498 -1.2358 6 1 0.8580 2.9769 -1.1460 7 6 1.9742 1.7408 -2.4811 8 7 2.8846 0.7978 -2.5869 9 14 1.2603 2.5264 -4.0182 10 1 0.0625 1.7639 -4.4531 11 1 0.8736 3.9295 -3.7231 12 1 2.2771 2.5103 -5.1003 13 7 1.5417 2.1380 1.1941 14 6 1.8404 3.5748 1.1296 15 6 2.0907 1.5407 2.4188 16 6 1.2660 1.9984 3.6235 17 6 -0.2402 1.8379 3.4079 18 6 1.6699 3.3832 4.1563 19 6 1.4749 2.8094 5.5696 20 6 1.7610 1.4259 4.9622 21 1 -0.3633 -1.0238 0.0902 22 1 -0.3633 0.5899 0.8414 23 1 -0.3634 0.4337 -0.9316 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3127 0.4454 -1.7909 27 1 1.3633 4.0059 0.2494 28 1 1.4610 4.0654 2.0260 29 1 2.9189 3.7192 1.0656 30 1 2.0505 0.4540 2.3427 31 1 3.1258 1.8581 2.5454 32 1 -0.4950 0.7782 3.3974 33 1 -0.7778 2.3328 4.2167 34 1 -0.5210 2.2886 2.4560 35 1 2.7022 3.6529 3.9331 36 1 0.9613 4.1719 3.9036 37 1 0.4587 2.9182 5.9487 38 1 2.2312 3.1381 6.2825 39 1 1.1259 0.6345 5.3602 40 1 2.8182 1.1605 4.9594 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720671325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:29 Heat of formation + Delta-G solvation = -2.447620 kcal Electronic energy + Delta-G solvation = -16942.737343 eV Core-core repulsion = 14564.206572 eV Total energy + Delta-G solvation = -2378.530770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81277 -38.48782 -34.97871 -32.87088 -30.71651 -28.39272 -27.96931 -26.36115 -26.01853 -24.47888 -22.61826 -20.90027 -19.16892 -18.53562 -16.90437 -16.47495 -16.34957 -15.60328 -15.40185 -15.16205 -14.49772 -14.16779 -13.99517 -13.64058 -13.38654 -13.10182 -12.92726 -12.81028 -12.65589 -12.51893 -12.39700 -12.04207 -11.95413 -11.90550 -11.70816 -11.53606 -11.30856 -10.90222 -10.73812 -10.47495 -10.31196 -8.93789 -8.52022 -6.22761 1.53818 1.61588 1.78263 2.58869 3.22676 3.30660 3.69824 3.78920 3.94949 4.01370 4.32468 4.35962 4.52665 4.57044 4.61506 4.62757 4.76017 4.81283 4.83992 4.88366 4.95859 5.04435 5.07444 5.12010 5.13960 5.14913 5.25632 5.27306 5.36933 5.43030 5.53038 5.57164 5.70415 5.78727 5.98988 6.11484 6.52441 6.58132 6.81576 7.54690 8.83583 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042754 B = 0.007543 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.744985 B = 3711.323814 C = 3894.998224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C 0.207 3.793 4 H -0.056 1.056 5 C -0.577 4.577 6 H 0.053 0.947 7 C -0.030 4.030 8 N -0.941 5.941 9 Si 1.110 2.890 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.289 1.289 13 N -0.517 5.517 14 C 0.042 3.958 15 C 0.065 3.935 16 C -0.077 4.077 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.126 4.126 20 C -0.131 4.131 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.256 0.744 27 H 0.055 0.945 28 H 0.083 0.917 29 H -0.008 1.008 30 H 0.060 0.940 31 H 0.009 0.991 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 3.109 13.985 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C 0.099 3.901 4 H -0.039 1.039 5 C -0.615 4.615 6 H 0.071 0.929 7 C -0.228 4.228 8 N -0.580 5.580 9 Si 0.933 3.067 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.215 1.215 13 N -0.240 5.240 14 C -0.107 4.107 15 C -0.063 4.063 16 C -0.078 4.078 17 C -0.168 4.168 18 C -0.172 4.172 19 C -0.163 4.163 20 C -0.169 4.169 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.183 2.993 12.349 13.723 hybrid contribution 1.526 -0.086 1.172 1.927 sum -3.656 2.907 13.522 14.306 Atomic orbital electron populations 1.21325 0.94617 0.99120 1.01543 1.21470 0.97839 0.97137 0.98006 1.19214 0.89514 0.92208 0.89152 1.03888 1.22148 1.28891 1.18217 0.92249 0.92865 1.26995 0.95557 0.95669 1.04532 1.70862 1.26424 1.28003 1.32689 0.83016 0.75611 0.75713 0.72360 1.20158 1.19690 1.21542 1.61955 1.58251 1.02583 1.01250 1.22298 0.96640 0.89715 1.02015 1.22155 0.94565 0.98903 0.90653 1.21847 0.96327 0.97125 0.92470 1.21374 0.92477 1.01213 1.01706 1.23059 1.00751 0.96314 0.97061 1.22753 1.02449 0.95486 0.95643 1.22986 1.01033 0.97766 0.95099 0.94064 0.91652 0.94757 0.94838 0.94496 0.93371 0.92643 0.89885 0.98938 0.92192 0.97264 0.93216 0.91767 0.92595 0.91487 0.91310 0.89102 0.90765 0.90715 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.49 71.98 0.68 -3.97 16 2 C -0.11 -5.06 5.18 30.59 0.16 -4.90 16 3 C 0.21 10.49 1.40 44.17 0.06 10.55 16 4 H -0.06 -3.27 7.54 -2.39 -0.02 -3.28 16 5 C -0.58 -31.74 6.59 25.60 0.17 -31.57 16 6 H 0.05 2.94 6.30 -2.91 -0.02 2.92 16 7 C -0.03 -1.69 5.27 84.66 0.45 -1.25 16 8 N -0.94 -57.51 12.85 21.45 0.28 -57.24 16 9 Si 1.11 50.74 29.91 68.60 2.05 52.80 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 N -0.52 -21.65 2.60 -901.45 -2.35 -23.99 16 14 C 0.04 1.66 8.81 127.69 1.12 2.79 16 15 C 0.07 2.35 4.43 86.30 0.38 2.73 16 16 C -0.08 -2.13 0.94 -51.66 -0.05 -2.18 16 17 C -0.11 -2.98 8.74 71.98 0.63 -2.35 16 18 C -0.13 -3.28 5.13 31.12 0.16 -3.12 16 19 C -0.13 -2.44 7.73 31.12 0.24 -2.20 16 20 C -0.13 -2.94 7.23 31.12 0.23 -2.71 16 21 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 2.64 7.06 -2.39 -0.02 2.62 16 23 H 0.03 1.59 7.41 -2.39 -0.02 1.58 16 24 H 0.03 1.78 6.21 -2.39 -0.01 1.77 16 25 H 0.04 1.61 6.24 -2.39 -0.01 1.59 16 26 H 0.26 15.94 6.04 -92.71 -0.56 15.38 16 27 H 0.05 2.41 6.09 -2.39 -0.01 2.39 16 28 H 0.08 2.76 5.05 -2.38 -0.01 2.74 16 29 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 30 H 0.06 2.24 5.86 -2.38 -0.01 2.23 16 31 H 0.01 0.35 7.85 -2.39 -0.02 0.33 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.42 7.34 -2.39 -0.02 1.41 16 34 H 0.06 1.78 7.08 -2.39 -0.02 1.76 16 35 H 0.07 1.74 7.96 -2.39 -0.02 1.72 16 36 H 0.07 1.64 7.40 -2.39 -0.02 1.62 16 37 H 0.09 1.55 7.64 -2.38 -0.02 1.53 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 40 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 Total: -1.00 -61.53 295.45 5.41 -56.12 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.19 Total: 10.49 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 4.23 Total: -38.18 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -2.07 Total: -81.23 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.80 kcal Total: -61.53 5.41 -56.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720671325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.676 kcal (2) G-P(sol) polarization free energy of solvation -61.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds