Wall clock time and date at job start Mon Mar 30 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.44267 * 111.00060 * 173.01940 * 12 2 1 14 14 C 1.54073 * 111.98056 * 219.30579 * 13 12 2 15 15 C 1.54295 * 112.28819 * 318.91653 * 14 13 12 16 16 H 1.08997 * 108.67680 * 79.15069 * 15 14 13 17 17 C 1.52995 * 108.76932 * 197.38244 * 15 14 13 18 18 C 1.50459 * 113.03273 * 318.29993 * 15 14 13 19 19 C 1.54512 * 108.85478 * 92.15583 * 18 15 14 20 20 H 1.09002 * 109.05603 * 43.34546 * 19 18 15 21 21 C 1.52995 * 109.00008 * 162.30341 * 19 18 15 22 22 C 1.45862 * 111.58865 * 282.81001 * 19 18 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.08996 * 108.97821 * 339.94668 * 13 12 2 28 28 H 1.08999 * 108.98441 * 98.66566 * 13 12 2 29 29 H 1.08996 * 108.91835 * 198.18866 * 14 13 12 30 30 H 1.09009 * 108.91738 * 79.63509 * 14 13 12 31 31 H 1.08997 * 109.47320 * 183.49765 * 17 15 14 32 32 H 1.08992 * 109.47571 * 303.50409 * 17 15 14 33 33 H 1.09007 * 109.47012 * 63.50581 * 17 15 14 34 34 H 1.09006 * 109.57695 * 332.34862 * 18 15 14 35 35 H 1.08999 * 109.57384 * 211.96394 * 18 15 14 36 36 H 1.09001 * 109.46759 * 182.05591 * 21 19 18 37 37 H 1.09001 * 109.47029 * 302.04687 * 21 19 18 38 38 H 1.08991 * 109.47333 * 62.05102 * 21 19 18 39 39 H 1.09007 * 108.79645 * 300.43753 * 22 19 18 40 40 H 1.08998 * 108.79571 * 182.21372 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 3.4524 -0.8552 1.1538 14 6 3.8948 -2.2269 1.6984 15 6 3.1038 -2.6395 2.9573 16 1 2.1311 -3.0224 2.6485 17 6 3.8664 -3.7555 3.6741 18 6 2.8931 -1.5018 3.9192 19 6 1.5449 -0.8190 3.5974 20 1 0.7932 -1.5860 3.4106 21 6 1.1126 0.0215 4.8005 22 6 1.6464 0.0436 2.4256 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 3.7874 -0.7591 0.1210 28 1 3.9176 -0.0704 1.7502 29 1 4.9554 -2.1836 1.9457 30 1 3.7446 -2.9796 0.9243 31 1 3.2873 -4.0987 4.5313 32 1 4.0255 -4.5863 2.9868 33 1 4.8299 -3.3763 4.0149 34 1 3.7026 -0.7795 3.8135 35 1 2.8739 -1.8851 4.9394 36 1 0.1441 0.4777 4.5956 37 1 1.0345 -0.6170 5.6805 38 1 1.8509 0.8023 4.9824 39 1 2.3977 0.8098 2.6175 40 1 0.6849 0.5307 2.2637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723822048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:49 Heat of formation + Delta-G solvation = -14.725909 kcal Electronic energy + Delta-G solvation = -16873.955402 eV Core-core repulsion = 14494.892205 eV Total energy + Delta-G solvation = -2379.063197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04609 -35.38488 -33.78491 -32.47067 -29.63310 -27.55017 -26.32436 -25.64923 -24.28756 -22.00433 -20.16018 -19.54753 -18.59771 -16.17480 -15.59490 -14.83860 -14.55678 -14.18468 -13.81412 -13.25535 -12.88091 -12.58482 -12.43075 -12.25894 -12.09974 -11.64509 -11.57550 -11.25545 -10.96380 -10.87842 -10.60813 -10.48664 -10.22345 -10.15063 -10.08530 -9.85806 -9.79456 -9.58994 -9.44725 -8.78855 -8.40092 -7.08318 -5.99323 -4.03240 3.32932 3.37308 3.40295 4.41856 4.89715 5.07173 5.23915 5.32432 5.43539 5.50820 5.63135 5.73434 5.88864 5.92078 5.97841 6.08632 6.12045 6.19776 6.21983 6.24060 6.37762 6.38519 6.45381 6.71744 6.72552 6.79584 6.89537 6.92583 6.95808 7.02134 7.15066 7.23377 7.60400 7.84044 7.86273 8.30495 8.44294 8.66951 9.04613 9.61239 11.07403 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.008580 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.353852 B = 3262.692911 C = 3941.623275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.522 5.522 13 C 0.055 3.945 14 C -0.100 4.100 15 C -0.082 4.082 16 H 0.073 0.927 17 C -0.147 4.147 18 C -0.100 4.100 19 C -0.084 4.084 20 H 0.072 0.928 21 C -0.145 4.145 22 C 0.053 3.947 23 H 0.083 0.917 24 H 0.007 0.993 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.086 0.914 28 H 0.016 0.984 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.019 0.981 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -3.660 11.339 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.106 3.894 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.246 5.246 13 C -0.074 4.074 14 C -0.138 4.138 15 C -0.101 4.101 16 H 0.092 0.908 17 C -0.205 4.205 18 C -0.138 4.138 19 C -0.103 4.103 20 H 0.090 0.910 21 C -0.203 4.203 22 C -0.075 4.075 23 H 0.102 0.898 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.722 -4.005 11.176 12.180 hybrid contribution 0.658 0.380 -0.900 1.178 sum 3.380 -3.625 10.277 11.409 Atomic orbital electron populations 1.21825 0.97825 0.99542 0.99642 1.19276 0.92326 0.91954 0.85815 0.98649 1.21134 1.30965 1.12302 0.89831 0.91828 1.24927 0.95234 0.95070 0.98973 1.69889 1.36866 1.22990 1.23461 0.86607 0.79071 0.79799 0.82208 1.20235 1.21382 1.20370 1.61652 1.11328 1.49536 1.02098 1.21875 0.89438 0.94480 1.01615 1.21988 0.97186 0.98331 0.96327 1.20784 0.99920 0.94713 0.94676 0.90830 1.21978 0.99915 0.98764 0.99799 1.21426 0.97034 0.97507 0.97787 1.20159 0.97465 0.98321 0.94388 0.90965 1.21868 1.00887 0.99740 0.97817 1.21030 1.00569 0.94605 0.91279 0.89825 0.97367 0.94784 0.92966 0.89625 0.96564 0.93615 0.92427 0.93431 0.93217 0.93444 0.92654 0.92817 0.92968 0.93094 0.93210 0.96258 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.93 37.16 0.33 -2.90 16 2 C 0.21 5.39 1.99 -68.86 -0.14 5.25 16 3 H 0.00 -0.11 8.13 -51.93 -0.42 -0.54 16 4 C -0.50 -13.75 7.37 -34.44 -0.25 -14.01 16 5 H 0.06 1.73 6.74 -52.49 -0.35 1.38 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.52 -11.27 4.08 -232.93 -0.95 -12.22 16 13 C 0.06 1.11 4.67 -4.67 -0.02 1.09 16 14 C -0.10 -1.70 5.51 -25.49 -0.14 -1.84 16 15 C -0.08 -1.26 2.32 -91.21 -0.21 -1.47 16 16 H 0.07 1.26 7.38 -51.93 -0.38 0.87 16 17 C -0.15 -1.86 8.79 37.16 0.33 -1.53 16 18 C -0.10 -1.44 4.45 -27.21 -0.12 -1.57 16 19 C -0.08 -1.31 2.46 -93.21 -0.23 -1.54 16 20 H 0.07 1.19 7.59 -51.93 -0.39 0.80 16 21 C -0.15 -1.87 9.02 37.15 0.34 -1.53 16 22 C 0.05 0.99 3.97 -6.70 -0.03 0.97 16 23 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 24 H 0.01 0.17 6.17 -51.93 -0.32 -0.15 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.09 1.94 5.67 -51.93 -0.29 1.64 16 28 H 0.02 0.32 6.51 -51.93 -0.34 -0.02 16 29 H 0.05 0.70 7.98 -51.93 -0.41 0.28 16 30 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.05 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.05 0.83 7.15 -51.93 -0.37 0.46 16 35 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.36 7.24 -51.93 -0.38 -0.01 16 40 H 0.07 1.27 5.69 -51.93 -0.30 0.97 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -27.54 294.26 -8.33 -35.88 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.18 Total: -2.01 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.24 Total: -17.53 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.32 Total: -37.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.54 -8.33 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723822048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.152 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds