Wall clock time and date at job start Mon Mar 30 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.44267 * 111.00060 * 173.01940 * 12 2 1 14 14 C 1.54073 * 111.98056 * 219.30579 * 13 12 2 15 15 C 1.54295 * 112.28819 * 318.91653 * 14 13 12 16 16 H 1.08997 * 108.67680 * 79.15069 * 15 14 13 17 17 C 1.52995 * 108.76932 * 197.38244 * 15 14 13 18 18 C 1.50459 * 113.03273 * 318.29993 * 15 14 13 19 19 C 1.54512 * 108.85478 * 92.15583 * 18 15 14 20 20 H 1.09002 * 109.05603 * 43.34546 * 19 18 15 21 21 C 1.52995 * 109.00008 * 162.30341 * 19 18 15 22 22 C 1.45862 * 111.58865 * 282.81001 * 19 18 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.08996 * 108.97821 * 339.94668 * 13 12 2 28 28 H 1.08999 * 108.98441 * 98.66566 * 13 12 2 29 29 H 1.08996 * 108.91835 * 198.18866 * 14 13 12 30 30 H 1.09009 * 108.91738 * 79.63509 * 14 13 12 31 31 H 1.08997 * 109.47320 * 183.49765 * 17 15 14 32 32 H 1.08992 * 109.47571 * 303.50409 * 17 15 14 33 33 H 1.09007 * 109.47012 * 63.50581 * 17 15 14 34 34 H 1.09006 * 109.57695 * 332.34862 * 18 15 14 35 35 H 1.08999 * 109.57384 * 211.96394 * 18 15 14 36 36 H 1.09001 * 109.46759 * 182.05591 * 21 19 18 37 37 H 1.09001 * 109.47029 * 302.04687 * 21 19 18 38 38 H 1.08991 * 109.47333 * 62.05102 * 21 19 18 39 39 H 1.09007 * 108.79645 * 300.43753 * 22 19 18 40 40 H 1.08998 * 108.79571 * 182.21372 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 3.4524 -0.8552 1.1538 14 6 3.8948 -2.2269 1.6984 15 6 3.1038 -2.6395 2.9573 16 1 2.1311 -3.0224 2.6485 17 6 3.8664 -3.7555 3.6741 18 6 2.8931 -1.5018 3.9192 19 6 1.5449 -0.8190 3.5974 20 1 0.7932 -1.5860 3.4106 21 6 1.1126 0.0215 4.8005 22 6 1.6464 0.0436 2.4256 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 3.7874 -0.7591 0.1210 28 1 3.9176 -0.0704 1.7502 29 1 4.9554 -2.1836 1.9457 30 1 3.7446 -2.9796 0.9243 31 1 3.2873 -4.0987 4.5313 32 1 4.0255 -4.5863 2.9868 33 1 4.8299 -3.3763 4.0149 34 1 3.7026 -0.7795 3.8135 35 1 2.8739 -1.8851 4.9394 36 1 0.1441 0.4777 4.5956 37 1 1.0345 -0.6170 5.6805 38 1 1.8509 0.8023 4.9824 39 1 2.3977 0.8098 2.6175 40 1 0.6849 0.5307 2.2637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723822048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:49 Heat of formation + Delta-G solvation = -29.942582 kcal Electronic energy + Delta-G solvation = -16874.615247 eV Core-core repulsion = 14494.892205 eV Total energy + Delta-G solvation = -2379.723041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53202 -37.03308 -35.09220 -34.39721 -31.44477 -29.07543 -27.51646 -27.39607 -25.99526 -23.48648 -21.88694 -20.97049 -20.05638 -18.24274 -17.30688 -16.40715 -16.03942 -15.80141 -15.27120 -14.89436 -14.53768 -13.91075 -13.78569 -13.67035 -13.43241 -13.22664 -12.89887 -12.73262 -12.63118 -12.47912 -12.32954 -12.29620 -12.04473 -11.92800 -11.53712 -11.21446 -11.14823 -11.07223 -10.98633 -10.77056 -10.49903 -8.86969 -8.11869 -6.22836 1.40954 1.42716 1.50289 2.41262 3.15603 3.34702 3.81164 4.05917 4.18593 4.29611 4.34932 4.38349 4.57699 4.66374 4.78425 4.78684 4.90032 4.94199 4.94906 4.97677 5.01089 5.05730 5.14276 5.17487 5.19227 5.29725 5.35546 5.39937 5.50279 5.55938 5.61331 5.64635 5.72509 5.74400 5.86751 6.26936 6.51969 6.79851 6.95802 7.45682 8.94167 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.008580 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.353852 B = 3262.692911 C = 3941.623275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.216 3.784 3 H -0.042 1.042 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.526 5.526 13 C 0.056 3.944 14 C -0.095 4.095 15 C -0.081 4.081 16 H 0.052 0.948 17 C -0.141 4.141 18 C -0.095 4.095 19 C -0.084 4.084 20 H 0.062 0.938 21 C -0.139 4.139 22 C 0.057 3.943 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.054 0.946 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -4.850 12.954 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 H -0.024 1.024 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.249 5.249 13 C -0.073 4.073 14 C -0.133 4.133 15 C -0.099 4.099 16 H 0.070 0.930 17 C -0.198 4.198 18 C -0.132 4.132 19 C -0.103 4.103 20 H 0.081 0.919 21 C -0.197 4.197 22 C -0.071 4.071 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.486 -5.203 12.811 14.260 hybrid contribution 0.431 0.795 -1.380 1.651 sum 3.917 -4.408 11.430 12.862 Atomic orbital electron populations 1.21632 0.97448 0.99042 0.99453 1.19085 0.92603 0.90053 0.87321 1.02436 1.21377 1.30970 1.12244 0.90941 0.92288 1.25710 0.95413 0.95774 1.01882 1.70018 1.37759 1.24177 1.24086 0.85606 0.78721 0.78705 0.78586 1.19729 1.20890 1.19688 1.61701 1.12249 1.49140 1.01833 1.21879 0.88564 0.96801 1.00073 1.21936 0.98745 0.95642 0.96964 1.20748 0.98914 0.96058 0.94205 0.92952 1.21904 1.00283 0.97590 0.99998 1.21407 0.95919 0.96924 0.98949 1.20133 0.98224 0.97977 0.93952 0.91917 1.21809 1.00872 0.99794 0.97175 1.21127 0.99630 0.95102 0.91244 0.92228 0.95328 0.95207 0.92935 0.92792 0.96035 0.91450 0.93823 0.91832 0.93224 0.92209 0.92976 0.90071 0.93057 0.90804 0.92705 0.96505 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.93 71.98 0.64 -5.33 16 2 C 0.22 11.36 1.99 44.17 0.09 11.45 16 3 H -0.04 -2.46 8.13 -2.39 -0.02 -2.48 16 4 C -0.52 -28.98 7.37 25.60 0.19 -28.79 16 5 H 0.06 3.29 6.74 -2.91 -0.02 3.27 16 6 C 0.01 0.61 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.53 -23.04 4.08 -890.86 -3.63 -26.67 16 13 C 0.06 2.28 4.67 87.16 0.41 2.68 16 14 C -0.09 -3.13 5.51 31.40 0.17 -2.96 16 15 C -0.08 -2.29 2.32 -11.18 -0.03 -2.32 16 16 H 0.05 1.72 7.38 -2.39 -0.02 1.70 16 17 C -0.14 -3.08 8.79 71.98 0.63 -2.45 16 18 C -0.09 -2.46 4.45 30.29 0.13 -2.33 16 19 C -0.08 -2.45 2.46 -12.47 -0.03 -2.48 16 20 H 0.06 1.97 7.59 -2.39 -0.02 1.96 16 21 C -0.14 -3.18 9.02 71.98 0.65 -2.53 16 22 C 0.06 2.10 3.97 83.94 0.33 2.43 16 23 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 24 H 0.03 1.28 6.17 -2.39 -0.01 1.27 16 25 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 27 H 0.05 2.52 5.67 -2.39 -0.01 2.51 16 28 H 0.02 0.84 6.51 -2.39 -0.02 0.82 16 29 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 30 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.06 1.21 8.07 -2.39 -0.02 1.19 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.05 1.41 7.15 -2.38 -0.02 1.39 16 35 H 0.08 1.71 7.54 -2.39 -0.02 1.69 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.02 0.63 7.24 -2.38 -0.02 0.61 16 40 H 0.05 2.08 5.69 -2.39 -0.01 2.06 16 Total: -1.00 -60.09 294.26 3.26 -56.84 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.98 Total: 8.72 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.64 Total: -31.57 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.39 Total: -80.34 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.09 3.26 -56.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723822048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.895 kcal (2) G-P(sol) polarization free energy of solvation -60.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds