Wall clock time and date at job start Mon Mar 30 2020 03:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47343 * 2 1 4 4 C 1.53006 * 109.47348 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47213 * 184.99684 * 4 2 1 6 6 H 1.07999 * 119.99896 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99513 * 180.02562 * 5 4 2 8 8 N 1.31504 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99621 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47149 * 60.00099 * 9 7 5 11 11 H 1.48496 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47278 * 300.00267 * 9 7 5 13 13 N 1.46906 * 109.47232 * 239.99863 * 2 1 3 14 14 C 1.46845 * 110.99907 * 306.66679 * 13 2 1 15 15 C 1.53039 * 109.51924 * 185.83530 * 14 13 2 16 16 C 1.53113 * 109.28031 * 300.81784 * 15 14 13 17 17 C 1.53119 * 109.15996 * 57.65679 * 16 15 14 18 18 H 1.09000 * 109.50467 * 62.28355 * 17 16 15 19 19 C 1.53002 * 109.50346 * 182.36527 * 17 16 15 20 20 C 1.46850 * 110.99355 * 70.87375 * 13 2 1 21 21 H 1.08998 * 109.46339 * 294.17205 * 20 13 2 22 22 C 1.52997 * 109.46624 * 54.14947 * 20 13 2 23 23 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46939 * 299.99818 * 1 2 3 25 25 H 1.09004 * 109.46945 * 59.99537 * 1 2 3 26 26 H 1.08992 * 109.47031 * 305.00004 * 4 2 1 27 27 H 1.09003 * 109.46592 * 64.99924 * 4 2 1 28 28 H 0.97010 * 119.99977 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.45998 * 65.82188 * 14 13 2 30 30 H 1.08996 * 109.45992 * 305.84948 * 14 13 2 31 31 H 1.09003 * 109.50279 * 60.76303 * 15 14 13 32 32 H 1.09005 * 109.50177 * 180.87526 * 15 14 13 33 33 H 1.09002 * 109.52486 * 177.56058 * 16 15 14 34 34 H 1.09002 * 109.52330 * 297.75365 * 16 15 14 35 35 H 1.08997 * 109.47255 * 60.00097 * 19 17 16 36 36 H 1.09000 * 109.47411 * 180.02562 * 19 17 16 37 37 H 1.09006 * 109.47451 * 299.99645 * 19 17 16 38 38 H 1.08999 * 109.47247 * 173.67963 * 22 20 13 39 39 H 1.09001 * 109.46744 * 293.67830 * 22 20 13 40 40 H 1.08992 * 109.47327 * 53.67271 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2304 -1.1937 2.3578 8 7 3.5765 -1.8387 3.2988 9 14 6.0920 -1.0613 2.4368 10 1 6.4845 0.3696 2.4973 11 1 6.5871 -1.7625 3.6485 12 1 6.6845 -1.6863 1.2270 13 7 2.0197 -0.6925 -1.1995 14 6 1.4232 -2.0294 -1.3156 15 6 2.0625 -2.7743 -2.4897 16 6 1.8334 -1.9791 -3.7779 17 6 2.4212 -0.5749 -3.6130 18 1 3.4972 -0.6471 -3.4544 19 6 2.1447 0.2460 -4.8742 20 6 1.7715 0.1063 -2.4064 21 1 0.6974 0.1906 -2.5717 22 6 2.3704 1.5026 -2.2257 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7716 1.2055 28 1 4.0609 -2.2456 4.0343 29 1 0.3508 -1.9350 -1.4860 30 1 1.5970 -2.5858 -0.3946 31 1 3.1329 -2.8811 -2.3134 32 1 1.6087 -3.7607 -2.5853 33 1 2.3243 -2.4841 -4.6099 34 1 0.7639 -1.9055 -3.9752 35 1 1.0686 0.3191 -5.0315 36 1 2.5637 1.2453 -4.7565 37 1 2.6052 -0.2417 -5.7335 38 1 2.2860 2.0578 -3.1599 39 1 1.8308 2.0303 -1.4393 40 1 3.4210 1.4143 -1.9491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:49 Heat of formation + Delta-G solvation = -18.948797 kcal Electronic energy + Delta-G solvation = -16933.985714 eV Core-core repulsion = 14554.739399 eV Total energy + Delta-G solvation = -2379.246315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37417 -35.29989 -32.68524 -32.51576 -30.16472 -27.46306 -27.23740 -25.65645 -23.55928 -22.35386 -20.90716 -19.45641 -18.31336 -16.11491 -15.46753 -15.00421 -14.46766 -14.27303 -13.88927 -13.66738 -13.04802 -12.74791 -12.33434 -12.10748 -11.92678 -11.66005 -11.58338 -11.47189 -11.42644 -11.10068 -10.94956 -10.63537 -10.51346 -10.35511 -10.24730 -10.03550 -9.81669 -9.44587 -9.07402 -8.89865 -8.20364 -7.33058 -5.84017 -3.81185 3.43519 3.47075 3.50855 4.54853 4.60652 5.02592 5.06850 5.23005 5.47637 5.52732 5.65939 5.70317 5.74447 5.82548 5.85166 5.87999 5.97821 5.99992 6.03902 6.12323 6.14072 6.23157 6.24845 6.39153 6.43248 6.55289 6.59888 6.64300 6.69452 6.82396 6.85240 7.10418 7.63505 7.78740 8.03595 8.13876 8.19588 8.64736 9.24448 9.79957 11.28085 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.008514 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.794823 B = 3287.739203 C = 3455.966387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.075 0.925 4 C 0.031 3.969 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.505 5.505 14 C 0.057 3.943 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.085 4.085 18 H 0.078 0.922 19 C -0.146 4.146 20 C 0.086 3.914 21 H 0.028 0.972 22 C -0.148 4.148 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.016 0.984 27 H 0.018 0.982 28 H 0.257 0.743 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 2.347 -13.291 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.093 0.907 4 C -0.006 4.006 5 C -0.525 4.525 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.229 5.229 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.104 4.104 18 H 0.096 0.904 19 C -0.204 4.204 20 C -0.023 4.023 21 H 0.046 0.954 22 C -0.205 4.205 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.238 2.193 -13.076 13.919 hybrid contribution 0.106 0.059 0.085 0.148 sum -4.132 2.252 -12.991 13.817 Atomic orbital electron populations 1.22517 1.00091 1.01217 1.00433 1.21996 0.89842 0.98866 0.91878 0.90684 1.19188 0.96299 0.95313 0.89842 1.21132 0.91826 1.32752 1.06793 0.92238 1.24999 0.97882 0.95984 0.96060 1.69954 1.35225 1.37043 1.12415 0.86713 0.86566 0.77945 0.77035 1.20556 1.21720 1.20418 1.62053 1.58318 1.01578 1.00946 1.22057 0.94764 0.91152 0.99132 1.21586 1.02173 0.97477 0.94235 1.21614 0.99973 0.95703 0.97673 1.21175 1.01156 0.94332 0.93725 0.90392 1.21882 1.01069 1.00127 0.97288 1.21546 0.96459 0.93369 0.90915 0.95396 1.21962 1.02398 0.95550 1.00628 0.92936 0.92737 0.94320 0.96557 0.96382 0.93344 0.96128 0.89625 0.91002 0.92455 0.92590 0.92936 0.93248 0.92394 0.93066 0.92891 0.92661 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.43 37.15 0.31 -2.96 16 2 C 0.08 1.69 1.98 -67.71 -0.13 1.56 16 3 H 0.08 1.57 5.75 -51.93 -0.30 1.28 16 4 C 0.03 0.79 4.38 -27.88 -0.12 0.66 16 5 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.55 13.28 55.43 0.74 -26.81 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.51 -9.71 4.15 -218.76 -0.91 -10.62 16 14 C 0.06 1.03 4.53 -3.83 -0.02 1.02 16 15 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 16 C -0.11 -1.52 5.29 -26.61 -0.14 -1.66 16 17 C -0.09 -1.20 2.40 -90.54 -0.22 -1.42 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.15 -1.67 8.87 37.16 0.33 -1.34 16 20 C 0.09 1.37 1.65 -67.72 -0.11 1.26 16 21 H 0.03 0.45 6.90 -51.93 -0.36 0.09 16 22 C -0.15 -2.25 8.40 37.16 0.31 -1.93 16 23 H 0.05 0.93 6.46 -51.93 -0.34 0.60 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.62 6.85 -51.93 -0.36 0.26 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.49 6.25 -51.93 -0.32 0.17 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.02 0.36 6.57 -51.93 -0.34 0.01 16 30 H 0.09 1.79 6.16 -51.93 -0.32 1.47 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.63 6.33 -51.93 -0.33 0.31 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.67 6.15 -51.93 -0.32 0.35 16 39 H 0.05 0.85 6.48 -51.93 -0.34 0.52 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -29.50 295.99 -8.17 -37.67 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.09 Total: -2.50 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -0.35 Total: -19.48 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.17 Total: -37.43 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.50 -8.17 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.719 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds