Wall clock time and date at job start Mon Mar 30 2020 03:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47343 * 2 1 4 4 C 1.53006 * 109.47348 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47213 * 184.99684 * 4 2 1 6 6 H 1.07999 * 119.99896 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99513 * 180.02562 * 5 4 2 8 8 N 1.31504 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99621 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47149 * 60.00099 * 9 7 5 11 11 H 1.48496 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47278 * 300.00267 * 9 7 5 13 13 N 1.46906 * 109.47232 * 239.99863 * 2 1 3 14 14 C 1.46845 * 110.99907 * 306.66679 * 13 2 1 15 15 C 1.53039 * 109.51924 * 185.83530 * 14 13 2 16 16 C 1.53113 * 109.28031 * 300.81784 * 15 14 13 17 17 C 1.53119 * 109.15996 * 57.65679 * 16 15 14 18 18 H 1.09000 * 109.50467 * 62.28355 * 17 16 15 19 19 C 1.53002 * 109.50346 * 182.36527 * 17 16 15 20 20 C 1.46850 * 110.99355 * 70.87375 * 13 2 1 21 21 H 1.08998 * 109.46339 * 294.17205 * 20 13 2 22 22 C 1.52997 * 109.46624 * 54.14947 * 20 13 2 23 23 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46939 * 299.99818 * 1 2 3 25 25 H 1.09004 * 109.46945 * 59.99537 * 1 2 3 26 26 H 1.08992 * 109.47031 * 305.00004 * 4 2 1 27 27 H 1.09003 * 109.46592 * 64.99924 * 4 2 1 28 28 H 0.97010 * 119.99977 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.45998 * 65.82188 * 14 13 2 30 30 H 1.08996 * 109.45992 * 305.84948 * 14 13 2 31 31 H 1.09003 * 109.50279 * 60.76303 * 15 14 13 32 32 H 1.09005 * 109.50177 * 180.87526 * 15 14 13 33 33 H 1.09002 * 109.52486 * 177.56058 * 16 15 14 34 34 H 1.09002 * 109.52330 * 297.75365 * 16 15 14 35 35 H 1.08997 * 109.47255 * 60.00097 * 19 17 16 36 36 H 1.09000 * 109.47411 * 180.02562 * 19 17 16 37 37 H 1.09006 * 109.47451 * 299.99645 * 19 17 16 38 38 H 1.08999 * 109.47247 * 173.67963 * 22 20 13 39 39 H 1.09001 * 109.46744 * 293.67830 * 22 20 13 40 40 H 1.08992 * 109.47327 * 53.67271 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2304 -1.1937 2.3578 8 7 3.5765 -1.8387 3.2988 9 14 6.0920 -1.0613 2.4368 10 1 6.4845 0.3696 2.4973 11 1 6.5871 -1.7625 3.6485 12 1 6.6845 -1.6863 1.2270 13 7 2.0197 -0.6925 -1.1995 14 6 1.4232 -2.0294 -1.3156 15 6 2.0625 -2.7743 -2.4897 16 6 1.8334 -1.9791 -3.7779 17 6 2.4212 -0.5749 -3.6130 18 1 3.4972 -0.6471 -3.4544 19 6 2.1447 0.2460 -4.8742 20 6 1.7715 0.1063 -2.4064 21 1 0.6974 0.1906 -2.5717 22 6 2.3704 1.5026 -2.2257 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7716 1.2055 28 1 4.0609 -2.2456 4.0343 29 1 0.3508 -1.9350 -1.4860 30 1 1.5970 -2.5858 -0.3946 31 1 3.1329 -2.8811 -2.3134 32 1 1.6087 -3.7607 -2.5853 33 1 2.3243 -2.4841 -4.6099 34 1 0.7639 -1.9055 -3.9752 35 1 1.0686 0.3191 -5.0315 36 1 2.5637 1.2453 -4.7565 37 1 2.6052 -0.2417 -5.7335 38 1 2.2860 2.0578 -3.1599 39 1 1.8308 2.0303 -1.4393 40 1 3.4210 1.4143 -1.9491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:49 Heat of formation + Delta-G solvation = -36.221131 kcal Electronic energy + Delta-G solvation = -16934.734698 eV Core-core repulsion = 14554.739399 eV Total energy + Delta-G solvation = -2379.995300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74328 -36.78065 -34.60347 -33.93225 -31.71819 -29.18219 -28.66238 -26.85128 -25.34646 -23.98859 -22.17152 -20.78361 -19.81555 -18.33388 -16.95625 -16.62092 -16.14554 -15.59581 -15.19884 -14.99599 -14.52615 -14.17719 -13.87263 -13.71878 -13.38522 -13.13054 -13.03945 -12.83057 -12.69742 -12.66931 -12.45477 -12.32823 -12.26729 -11.88249 -11.68269 -11.46004 -11.16653 -11.07901 -10.80656 -10.77556 -10.44465 -8.80593 -8.08811 -6.13190 1.40730 1.43764 1.51099 2.47623 3.12597 3.28373 3.88881 3.94531 4.03226 4.18079 4.35552 4.45179 4.47950 4.49933 4.58369 4.59505 4.73105 4.77419 4.83238 4.91248 4.99496 5.05370 5.08765 5.15324 5.17337 5.21501 5.25079 5.31452 5.37812 5.42858 5.46702 5.58745 5.66149 5.76038 5.91776 6.37332 6.57019 6.65350 7.00361 7.52162 9.03217 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.008514 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.794823 B = 3287.739203 C = 3455.966387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 H 0.071 0.929 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.527 5.527 14 C 0.059 3.941 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.084 4.084 18 H 0.058 0.942 19 C -0.139 4.139 20 C 0.085 3.915 21 H 0.037 0.963 22 C -0.145 4.145 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.063 0.937 26 H -0.012 1.012 27 H -0.006 1.006 28 H 0.258 0.742 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 3.053 -15.725 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 H 0.090 0.910 4 C 0.000 4.000 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.251 5.251 14 C -0.069 4.069 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.103 4.103 18 H 0.077 0.923 19 C -0.196 4.196 20 C -0.023 4.023 21 H 0.055 0.945 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.007 0.993 27 H 0.012 0.988 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.247 2.910 -15.528 16.359 hybrid contribution 0.089 -0.173 0.855 0.877 sum -4.158 2.736 -14.672 15.494 Atomic orbital electron populations 1.22377 0.97736 1.01413 1.01696 1.21679 0.91684 0.97795 0.90622 0.91046 1.19044 0.95243 0.94211 0.91522 1.21435 0.93220 1.32214 1.06502 0.92530 1.25850 1.02819 0.95726 0.95781 1.70090 1.37109 1.38081 1.13096 0.85648 0.80705 0.78387 0.77138 1.19445 1.21292 1.19836 1.61959 1.59087 1.02320 1.01725 1.21985 0.95738 0.90646 0.98485 1.21565 1.00619 0.98541 0.94451 1.21590 1.00969 0.95009 0.96759 1.21175 0.99776 0.95163 0.94204 0.92317 1.21821 1.01938 0.99890 0.95999 1.21676 0.97210 0.93392 0.90039 0.94527 1.21945 1.00794 0.95494 1.01963 0.93244 0.92657 0.91797 0.99347 0.98819 0.93330 0.94885 0.93592 0.93146 0.90696 0.90571 0.91643 0.92226 0.91923 0.91623 0.89879 0.93300 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 8.43 71.98 0.61 -5.46 16 2 C 0.09 3.78 1.98 44.91 0.09 3.87 16 3 H 0.07 3.02 5.75 -2.39 -0.01 3.01 16 4 C 0.04 1.98 4.38 29.85 0.13 2.11 16 5 C -0.50 -28.75 8.84 25.60 0.23 -28.52 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -58.94 13.28 21.45 0.28 -58.65 16 9 Si 0.96 46.37 29.54 68.60 2.03 48.39 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.53 -20.20 4.15 -846.01 -3.51 -23.70 16 14 C 0.06 2.16 4.53 86.33 0.39 2.55 16 15 C -0.11 -3.44 6.09 30.65 0.19 -3.25 16 16 C -0.11 -2.56 5.29 30.67 0.16 -2.40 16 17 C -0.08 -2.17 2.40 -10.74 -0.03 -2.20 16 18 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 19 C -0.14 -2.63 8.87 71.98 0.64 -1.99 16 20 C 0.08 2.55 1.65 44.94 0.07 2.63 16 21 H 0.04 1.06 6.90 -2.39 -0.02 1.04 16 22 C -0.14 -4.14 8.40 71.98 0.60 -3.53 16 23 H 0.05 1.74 6.46 -2.39 -0.02 1.73 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.91 6.85 -2.39 -0.02 1.89 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H -0.01 -0.37 6.25 -2.39 -0.01 -0.39 16 28 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 29 H 0.03 1.11 6.57 -2.39 -0.02 1.09 16 30 H 0.05 2.01 6.16 -2.39 -0.01 2.00 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.13 6.33 -2.39 -0.02 1.12 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.85 6.15 -2.39 -0.01 1.83 16 39 H 0.05 1.44 6.48 -2.39 -0.02 1.42 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -64.79 295.99 3.33 -61.46 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.98 Total: 8.59 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 3.55 Total: -36.08 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -3.22 Total: -82.35 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -64.79 3.33 -61.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.238 kcal (2) G-P(sol) polarization free energy of solvation -64.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds