Wall clock time and date at job start Mon Mar 30 2020 03:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47468 * 2 1 4 4 C 1.53001 * 109.46876 * 120.00592 * 2 1 3 5 5 C 1.50703 * 109.46913 * 185.00057 * 4 2 1 6 6 H 1.07990 * 120.00253 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99866 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00212 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00042 * 359.97438 * 7 5 4 10 10 H 1.48490 * 109.47406 * 90.00082 * 9 7 5 11 11 H 1.48504 * 109.47147 * 210.00355 * 9 7 5 12 12 H 1.48497 * 109.46919 * 329.99784 * 9 7 5 13 13 N 1.46898 * 109.47185 * 239.99891 * 2 1 3 14 14 C 1.46846 * 111.00329 * 304.54465 * 13 2 1 15 15 C 1.53041 * 109.52903 * 185.83788 * 14 13 2 16 16 C 1.53119 * 109.27477 * 300.81928 * 15 14 13 17 17 H 1.09003 * 109.52400 * 177.55210 * 16 15 14 18 18 C 1.53002 * 109.57696 * 297.71603 * 16 15 14 19 19 C 1.53125 * 109.16115 * 57.65106 * 16 15 14 20 20 C 1.46852 * 110.99841 * 68.75036 * 13 2 1 21 21 H 1.08999 * 109.46106 * 294.17690 * 20 13 2 22 22 C 1.52997 * 109.45092 * 54.15335 * 20 13 2 23 23 H 1.08996 * 109.47468 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47214 * 300.00134 * 1 2 3 25 25 H 1.09002 * 109.47045 * 59.99862 * 1 2 3 26 26 H 1.08999 * 109.47027 * 304.99408 * 4 2 1 27 27 H 1.09000 * 109.47722 * 64.99913 * 4 2 1 28 28 H 0.96994 * 120.00434 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46202 * 305.85398 * 14 13 2 30 30 H 1.09000 * 109.46603 * 65.81933 * 14 13 2 31 31 H 1.08990 * 109.50638 * 180.88052 * 15 14 13 32 32 H 1.08998 * 109.49971 * 60.75712 * 15 14 13 33 33 H 1.08995 * 109.47133 * 179.84354 * 18 16 15 34 34 H 1.08995 * 109.46862 * 299.84041 * 18 16 15 35 35 H 1.08995 * 109.46957 * 59.84065 * 18 16 15 36 36 H 1.09006 * 109.50262 * 62.28892 * 19 16 15 37 37 H 1.09004 * 109.50387 * 182.36273 * 19 16 15 38 38 H 1.09002 * 109.46808 * 173.14015 * 22 20 13 39 39 H 1.08997 * 109.47228 * 293.13750 * 22 20 13 40 40 H 1.08999 * 109.47507 * 53.14141 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5418 -0.6150 1.3127 6 1 4.0789 -0.0863 0.5393 7 6 4.2302 -1.1929 2.3583 8 7 5.5409 -1.1006 2.4135 9 14 3.3012 -2.1070 3.6965 10 1 3.1695 -3.5371 3.3193 11 1 4.0449 -1.9993 4.9774 12 1 1.9505 -1.5109 3.8569 13 7 2.0196 -0.6925 -1.1994 14 6 1.4622 -2.0481 -1.2889 15 6 2.1034 -2.7883 -2.4650 16 6 1.8280 -2.0166 -3.7585 17 1 2.3196 -2.5170 -4.5929 18 6 0.3201 -1.9619 -4.0118 19 6 2.3757 -0.5933 -3.6210 20 6 1.7266 0.0832 -2.4114 21 1 0.6477 0.1329 -2.5587 22 6 2.2861 1.4989 -2.2580 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6053 -0.2619 2.1369 27 1 1.7515 -1.7717 1.2055 28 1 6.0253 -1.5074 3.1488 29 1 1.6685 -2.5874 -0.3644 30 1 0.3846 -1.9883 -1.4415 31 1 1.6781 -3.7889 -2.5407 32 1 3.1793 -2.8605 -2.3064 33 1 0.1259 -1.4099 -4.9313 34 1 -0.0692 -2.9755 -4.1073 35 1 -0.1706 -1.4614 -3.1770 36 1 3.4560 -0.6310 -3.4806 37 1 2.1456 -0.0260 -4.5229 38 1 2.1775 2.0365 -3.1999 39 1 1.7381 2.0233 -1.4751 40 1 3.3412 1.4455 -1.9896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:51 Heat of formation + Delta-G solvation = -13.292919 kcal Electronic energy + Delta-G solvation = -17048.301640 eV Core-core repulsion = 14669.300582 eV Total energy + Delta-G solvation = -2379.001058 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.57133 -35.49690 -32.77777 -32.02771 -30.25264 -27.91569 -26.89779 -26.38415 -23.67244 -22.56457 -20.94817 -19.15902 -17.80876 -16.52234 -15.77903 -14.92159 -14.53102 -14.46096 -13.83936 -13.51790 -13.32628 -12.80343 -12.59973 -12.10931 -12.01951 -11.82807 -11.69658 -11.56330 -11.36335 -11.20044 -11.01116 -10.82503 -10.48147 -10.32876 -10.21460 -9.94291 -9.63336 -9.49754 -9.41226 -8.95752 -8.38517 -7.34775 -5.87462 -3.80886 3.37345 3.45067 3.47595 4.51369 4.57256 5.02669 5.04054 5.18526 5.45008 5.47792 5.56168 5.63345 5.74022 5.75531 5.80698 5.87971 5.92291 5.93073 5.96115 6.05226 6.11398 6.23119 6.26604 6.35699 6.39921 6.47829 6.55999 6.57960 6.64854 6.71838 6.77851 6.91604 7.20404 7.41127 7.89448 7.97116 8.06286 8.76730 9.25998 9.75926 11.26633 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.008570 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.982335 B = 3266.309806 C = 3330.952084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.487 4.487 6 H 0.079 0.921 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.502 5.502 14 C 0.056 3.944 15 C -0.112 4.112 16 C -0.093 4.093 17 H 0.063 0.937 18 C -0.149 4.149 19 C -0.105 4.105 20 C 0.080 3.920 21 H 0.033 0.967 22 C -0.147 4.147 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -0.005 -11.066 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.017 4.017 3 H 0.099 0.901 4 C -0.045 4.045 5 C -0.525 4.525 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.226 5.226 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.111 4.111 17 H 0.082 0.918 18 C -0.206 4.206 19 C -0.142 4.142 20 C -0.029 4.029 21 H 0.050 0.950 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.547 -0.093 -10.918 14.503 hybrid contribution -1.294 -0.541 0.761 1.595 sum -10.841 -0.634 -10.156 14.869 Atomic orbital electron populations 1.22557 1.00054 1.01215 1.00788 1.21755 0.89658 0.99041 0.91199 0.90105 1.19704 0.98005 0.94976 0.91794 1.21055 0.89394 1.33661 1.08393 0.90279 1.25008 0.94646 0.96388 0.97788 1.69908 1.06378 1.46320 1.32309 0.86924 0.80429 0.80625 0.82096 1.20635 1.21678 1.19360 1.62020 1.58695 1.01169 1.00737 1.22082 0.95289 0.90854 0.99003 1.21608 1.02174 0.97355 0.93801 1.21141 0.95543 0.96568 0.97871 0.91817 1.21923 0.96422 1.01101 1.01132 1.21632 1.01243 0.94825 0.96549 1.21572 0.96686 0.93519 0.91107 0.94967 1.21894 1.02791 0.95233 1.00479 0.93008 0.92701 0.93853 0.96604 0.97030 0.93143 0.90073 0.95725 0.92488 0.90790 0.93298 0.93205 0.92416 0.90989 0.92541 0.93274 0.92705 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 8.47 37.16 0.31 -2.79 16 2 C 0.09 1.81 1.96 -67.72 -0.13 1.68 16 3 H 0.08 1.65 5.87 -51.93 -0.30 1.35 16 4 C -0.01 -0.18 3.41 -27.88 -0.10 -0.27 16 5 C -0.49 -13.83 9.39 -34.44 -0.32 -14.15 16 6 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 9 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 13 N -0.50 -9.43 4.16 -218.76 -0.91 -10.34 16 14 C 0.06 0.97 4.33 -3.83 -0.02 0.95 16 15 C -0.11 -1.71 5.60 -26.65 -0.15 -1.86 16 16 C -0.09 -1.23 3.21 -90.49 -0.29 -1.52 16 17 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.15 -1.76 8.62 37.16 0.32 -1.44 16 19 C -0.10 -1.48 4.88 -26.65 -0.13 -1.61 16 20 C 0.08 1.25 1.84 -67.72 -0.12 1.12 16 21 H 0.03 0.49 5.20 -51.93 -0.27 0.22 16 22 C -0.15 -2.23 8.54 37.16 0.32 -1.91 16 23 H 0.05 0.84 6.47 -51.93 -0.34 0.51 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.65 6.77 -51.93 -0.35 0.30 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.28 5.60 -51.93 -0.29 -0.01 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.08 1.60 6.07 -51.93 -0.32 1.29 16 30 H 0.02 0.40 4.96 -51.93 -0.26 0.14 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.74 4.93 -51.93 -0.26 0.49 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -30.06 289.39 -7.76 -37.82 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.91 Total: -1.44 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -0.41 Total: -20.10 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.14 Total: -38.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.06 -7.76 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.526 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds