Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86807 * 119.99911 * 2 1 4 4 H 1.48494 * 109.46975 * 274.99912 * 3 2 1 5 5 H 1.48503 * 109.47113 * 34.99785 * 3 2 1 6 6 H 1.48500 * 109.47140 * 154.99851 * 3 2 1 7 7 C 1.40121 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99965 * 174.97211 * 7 2 1 9 9 C 1.46165 * 119.99999 * 354.98172 * 7 2 1 10 10 O 1.21739 * 119.99975 * 5.01868 * 9 7 2 11 11 N 1.34773 * 119.99570 * 185.01426 * 9 7 2 12 12 C 1.39588 * 119.99536 * 185.56801 * 11 9 7 13 13 C 1.39355 * 120.50285 * 24.65426 * 12 11 9 14 14 C 1.38505 * 118.35847 * 180.25672 * 13 12 11 15 15 C 1.38280 * 119.28414 * 359.48384 * 14 13 12 16 16 N 1.31911 * 120.96035 * 0.27210 * 15 14 13 17 17 C 1.31862 * 121.79463 * 359.97438 * 16 15 14 18 18 Cl 1.73596 * 119.69646 * 180.02562 * 17 16 15 19 19 H 0.97006 * 119.99738 * 0.02562 * 1 2 3 20 20 H 0.96997 * 120.00688 * 5.57860 * 11 9 7 21 21 H 1.07995 * 120.82225 * 359.97438 * 13 12 11 22 22 H 1.08007 * 120.35396 * 179.75692 * 14 13 12 23 23 H 1.08004 * 119.51643 * 180.25635 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3822 2.1074 -1.3947 5 1 1.4946 2.6199 0.8030 6 1 3.5868 1.4121 0.5917 7 6 2.0070 -1.2135 0.0005 8 1 3.0840 -1.2153 -0.0814 9 6 1.2804 -2.4768 0.1118 10 8 0.0630 -2.4809 0.1120 11 7 1.9582 -3.6372 0.2142 12 6 1.2692 -4.8512 0.2034 13 6 0.0175 -4.9487 -0.4014 14 6 -0.6291 -6.1734 -0.3815 15 6 -0.0130 -7.2538 0.2229 16 7 1.1751 -7.1316 0.7828 17 6 1.8244 -5.9839 0.7914 18 17 3.3859 -5.8848 1.5435 19 1 -0.4850 0.8401 -0.0004 20 1 2.9247 -3.6289 0.2955 21 1 -0.4391 -4.0895 -0.8699 22 1 -1.6021 -6.2844 -0.8371 23 1 -0.5120 -8.2116 0.2369 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006330475.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = -34.478192 kcal Electronic energy + Delta-G solvation = -12914.299627 eV Core-core repulsion = 10366.330783 eV Total energy + Delta-G solvation = -2547.968845 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.025 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.46870 -39.40794 -37.62827 -35.69828 -34.61910 -32.99119 -30.96320 -28.36439 -24.92041 -24.25568 -21.93705 -19.78576 -18.42238 -17.82766 -17.76740 -16.93190 -16.00948 -15.50421 -15.42587 -14.77120 -14.64418 -14.06487 -13.34491 -13.19012 -12.87629 -12.75825 -12.72896 -12.30931 -12.05016 -11.77697 -10.99512 -10.81215 -10.46686 -9.85988 -8.99494 -8.42946 -7.00479 -0.01280 0.27016 0.82687 1.39440 1.40747 1.57133 2.17324 2.29403 2.63473 2.76797 3.47277 3.65366 3.86841 4.14963 4.21375 4.46821 5.05578 5.21032 5.24084 5.47903 5.66355 5.99217 6.06891 6.72259 6.76205 7.13263 8.20452 8.49295 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.040341 B = 0.008083 C = 0.006831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.912155 B = 3463.221410 C = 4097.713268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.033 3.967 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.528 3.472 10 O -0.597 6.597 11 N -0.679 5.679 12 C 0.138 3.862 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.074 3.926 16 N -0.470 5.470 17 C 0.101 3.899 18 Cl -0.033 7.033 19 H 0.280 0.720 20 H 0.408 0.592 21 H 0.137 0.863 22 H 0.174 0.826 23 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -7.840 -0.607 8.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.184 4.184 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.596 4.596 8 H 0.111 0.889 9 C 0.336 3.664 10 O -0.483 6.483 11 N -0.321 5.321 12 C 0.035 3.965 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.085 4.085 16 N -0.181 5.181 17 C -0.066 4.066 18 Cl -0.005 7.005 19 H 0.091 0.909 20 H 0.244 0.756 21 H 0.155 0.845 22 H 0.192 0.808 23 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.627 -8.336 -0.159 8.741 hybrid contribution 0.452 1.488 -0.210 1.569 sum 3.079 -6.848 -0.369 7.517 Atomic orbital electron populations 1.70108 1.09432 1.29651 1.34176 1.26958 0.95588 1.04831 0.91055 0.84960 0.78930 0.74851 0.79399 1.18490 1.19583 1.17249 1.21385 0.95458 0.89534 1.53209 0.88921 1.18744 0.87218 0.83323 0.77070 1.90545 1.15174 1.86544 1.56058 1.43845 1.10597 1.03382 1.74318 1.18798 0.94827 0.86747 0.96108 1.22028 0.94116 0.99893 0.98483 1.22497 1.02018 0.91393 0.99031 1.23145 0.89482 1.00612 0.95309 1.66889 1.10129 1.23772 1.17292 1.21291 0.92014 0.90851 1.02458 1.98341 1.23833 1.97850 1.80491 0.90950 0.75598 0.84537 0.80820 0.77813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.05 11.84 21.85 0.26 -45.79 14 2 C 0.03 1.73 5.50 85.33 0.47 2.20 14 3 Si 1.00 38.45 29.56 68.60 2.03 40.48 14 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 14 6 H -0.25 -8.99 7.11 99.48 0.71 -8.28 14 7 C -0.56 -30.06 9.53 24.79 0.24 -29.82 14 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 14 9 C 0.53 29.18 7.55 86.30 0.65 29.83 14 10 O -0.60 -36.84 12.23 -4.47 -0.05 -36.90 14 11 N -0.68 -31.00 5.18 -307.13 -1.59 -32.59 14 12 C 0.14 5.86 6.45 38.40 0.25 6.11 14 13 C -0.12 -4.75 8.82 22.60 0.20 -4.55 14 14 C -0.13 -3.86 10.10 22.34 0.23 -3.63 14 15 C 0.07 2.03 11.18 84.69 0.95 2.97 14 16 N -0.47 -15.93 10.33 -186.04 -1.92 -17.85 14 17 C 0.10 3.78 7.30 84.92 0.62 4.40 14 18 Cl -0.03 -1.10 27.95 -2.72 -0.08 -1.18 14 19 H 0.28 14.44 8.29 -92.70 -0.77 13.67 14 20 H 0.41 16.50 7.74 -92.71 -0.72 15.78 14 21 H 0.14 6.53 5.89 -2.91 -0.02 6.51 14 22 H 0.17 3.77 8.06 -2.91 -0.02 3.75 14 23 H 0.21 3.56 8.06 -2.91 -0.02 3.53 14 Total: -1.00 -67.92 230.74 2.79 -65.14 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.55 Total: 21.17 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 3.60 Total: 7.51 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.26 Total: -96.23 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.05 Total: -36.90 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -67.92 2.79 -65.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006330475.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.661 kcal (2) G-P(sol) polarization free energy of solvation -67.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds