Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31493 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48508 * 109.47141 * 270.00413 * 3 2 1 5 5 H 1.48501 * 109.47052 * 29.99582 * 3 2 1 6 6 H 1.48497 * 109.47557 * 150.00238 * 3 2 1 7 7 C 1.38718 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00539 * 180.02562 * 7 2 1 9 9 O 1.34796 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.35460 * 117.00288 * 185.05796 * 9 7 2 11 11 C 1.38774 * 120.17421 * 354.38907 * 10 9 7 12 12 C 1.38067 * 120.13549 * 179.72682 * 11 10 9 13 13 C 1.38575 * 120.49680 * 359.97434 * 12 11 10 14 14 C 1.37901 * 120.34340 * 0.02761 * 13 12 11 15 15 Cl 1.73606 * 120.07109 * 179.97438 * 14 13 12 16 16 C 1.40127 * 119.85663 * 359.97438 * 14 13 12 17 17 C 1.46671 * 120.24338 * 179.97438 * 16 14 13 18 18 O 1.21313 * 120.00021 * 359.97438 * 17 16 14 19 19 H 0.97002 * 120.00693 * 0.02562 * 1 2 3 20 20 H 1.08001 * 119.93095 * 359.74496 * 11 10 9 21 21 H 1.08003 * 119.75417 * 180.02562 * 12 11 10 22 22 H 1.07996 * 119.83058 * 179.97438 * 13 12 11 23 23 H 1.08000 * 120.00324 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0086 -1.2013 -0.0005 8 1 3.0886 -1.2014 -0.0001 9 8 1.3347 -2.3687 -0.0005 10 6 2.0685 -3.5024 0.1053 11 6 3.4548 -3.4400 0.0906 12 6 4.2019 -4.5955 0.2042 13 6 3.5784 -5.8262 0.3343 14 6 2.2022 -5.9115 0.3514 15 17 1.4284 -7.4571 0.5141 16 6 1.4296 -4.7481 0.2370 17 6 -0.0348 -4.8291 0.2536 18 8 -0.5814 -5.9063 0.3661 19 1 -0.4851 0.8400 -0.0004 20 1 3.9501 -2.4856 -0.0097 21 1 5.2804 -4.5397 0.1924 22 1 4.1734 -6.7232 0.4220 23 1 -0.6265 -3.9300 0.1648 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037461697.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = -39.612624 kcal Electronic energy + Delta-G solvation = -12902.418729 eV Core-core repulsion = 10321.934487 eV Total energy + Delta-G solvation = -2580.484241 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.55691 -37.86253 -36.70476 -35.62040 -32.64472 -30.57402 -29.19378 -25.68944 -24.09598 -21.75173 -20.47192 -18.36267 -17.44115 -15.67960 -15.46448 -14.94517 -14.30228 -14.28754 -13.83790 -13.59484 -13.14775 -13.01371 -12.14725 -12.00210 -11.47212 -11.26423 -11.18729 -10.71100 -10.59275 -10.57902 -9.85577 -9.11676 -8.63246 -8.32035 -7.59584 -6.75632 -4.34679 1.26638 1.98320 2.61963 2.98269 2.99499 3.04599 3.17589 3.73858 4.29767 4.80028 4.92854 5.08690 5.39642 5.62530 5.78916 6.11727 6.21676 6.36398 6.66901 6.77893 6.94308 7.03381 7.32781 7.66469 8.24653 8.68130 9.28513 10.40231 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.044402 B = 0.008009 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.447557 B = 3495.393512 C = 4111.988494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.046 3.954 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.399 4.399 8 H 0.100 0.900 9 O -0.152 6.152 10 C 0.199 3.801 11 C -0.237 4.237 12 C -0.034 4.034 13 C -0.223 4.223 14 C 0.067 3.933 15 Cl -0.059 7.059 16 C -0.270 4.270 17 C 0.386 3.614 18 O -0.479 6.479 19 H 0.277 0.723 20 H 0.138 0.862 21 H 0.122 0.878 22 H 0.122 0.878 23 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 -4.080 0.261 7.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.162 4.162 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.474 4.474 8 H 0.117 0.883 9 O -0.052 6.052 10 C 0.140 3.860 11 C -0.257 4.257 12 C -0.053 4.053 13 C -0.242 4.242 14 C 0.040 3.960 15 Cl -0.029 7.029 16 C -0.273 4.273 17 C 0.249 3.751 18 O -0.356 6.356 19 H 0.087 0.913 20 H 0.156 0.844 21 H 0.140 0.860 22 H 0.140 0.860 23 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.412 -4.531 0.315 7.065 hybrid contribution 0.656 0.845 -0.024 1.070 sum 6.067 -3.685 0.291 7.105 Atomic orbital electron populations 1.69987 1.06148 1.28623 1.43033 1.25405 0.95937 0.99165 0.95644 0.85616 0.78999 0.79317 0.79018 1.19543 1.19953 1.18900 1.21493 0.92179 0.80129 1.53642 0.88315 1.83831 1.34942 1.11621 1.74821 1.19255 0.90047 0.86731 0.89939 1.21250 0.93464 0.99607 1.11336 1.20895 0.99116 0.91443 0.93834 1.20496 0.91937 0.98333 1.13472 1.20779 0.92205 0.85758 0.97231 1.98351 1.81889 1.27251 1.95432 1.19627 0.96773 0.90317 1.20629 1.23616 0.88536 0.92675 0.70321 1.90500 1.74896 1.33014 1.37168 0.91320 0.84440 0.86006 0.86037 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.50 13.67 55.48 0.76 -21.74 14 2 C 0.05 1.14 5.49 -17.52 -0.10 1.04 14 3 Si 0.95 18.51 29.55 -169.99 -5.02 13.49 14 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 14 7 C -0.40 -9.96 9.49 30.91 0.29 -9.66 14 8 H 0.10 2.23 5.21 -52.49 -0.27 1.96 14 9 O -0.15 -3.86 8.94 1.03 0.01 -3.86 14 10 C 0.20 4.40 6.67 -38.49 -0.26 4.15 14 11 C -0.24 -4.59 9.15 -39.45 -0.36 -4.96 14 12 C -0.03 -0.56 10.02 -39.52 -0.40 -0.96 14 13 C -0.22 -3.78 9.81 -39.58 -0.39 -4.16 14 14 C 0.07 1.31 6.36 -39.00 -0.25 1.06 14 15 Cl -0.06 -1.07 26.03 -51.86 -1.35 -2.42 14 16 C -0.27 -5.74 5.89 -104.89 -0.62 -6.36 14 17 C 0.39 8.21 11.19 34.13 0.38 8.59 14 18 O -0.48 -10.61 14.80 5.53 0.08 -10.52 14 19 H 0.28 6.75 8.31 -40.82 -0.34 6.41 14 20 H 0.14 2.55 5.64 -52.49 -0.30 2.26 14 21 H 0.12 1.56 8.06 -52.48 -0.42 1.14 14 22 H 0.12 1.75 8.06 -52.49 -0.42 1.32 14 23 H 0.11 2.19 7.64 -52.49 -0.40 1.78 14 LS Contribution 231.28 15.07 3.49 3.49 Total: -1.00 -27.52 231.28 -4.68 -32.19 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -0.95 Total: 0.62 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.69 Total: -11.26 kcal Atomic # 7 Polarization: -22.50 SS G_CDS: 0.76 Total: -21.74 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.35 Total: -2.42 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.52 -4.68 -32.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037461697.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.418 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds