Wall clock time and date at job start Mon Mar 30 2020 03:11:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30622 * 1
3 3 Si 1.86805 * 120.00150 * 2 1
4 4 H 1.48503 * 109.46823 * 266.20348 * 3 2 1
5 5 H 1.48498 * 109.47094 * 26.20478 * 3 2 1
6 6 H 1.48493 * 109.47080 * 146.20582 * 3 2 1
7 7 C 1.40282 * 119.99970 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99909 * 349.60221 * 7 2 1
9 9 C 1.40875 * 120.00210 * 169.32663 * 7 2 1
10 10 C 1.40654 * 120.32461 * 322.72709 * 9 7 2
11 11 C 1.37764 * 119.87152 * 179.76385 * 10 9 7
12 12 Cl 1.73604 * 119.71975 * 180.23567 * 11 10 9
13 13 C 1.38966 * 120.55141 * 0.52153 * 11 10 9
14 14 C 1.38137 * 120.67357 * 359.73390 * 13 11 10
15 15 C 1.39317 * 120.10202 * 0.02562 * 14 13 11
16 16 C 1.47240 * 120.27698 * 179.97438 * 15 14 13
17 17 O 1.21537 * 120.00260 * 174.06034 * 16 15 14
18 18 O 1.34811 * 119.99809 * 354.06434 * 16 15 14
19 19 H 0.96995 * 119.99595 * 359.97438 * 1 2 3
20 20 H 1.07999 * 120.06190 * 0.03139 * 10 9 7
21 21 H 1.08005 * 119.66293 * 179.71793 * 13 11 10
22 22 H 1.08000 * 119.94970 * 179.97438 * 14 13 11
23 23 H 0.96698 * 116.99826 * 179.97438 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3062 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.5681 2.0000 -1.3970
5 1 1.3999 2.6745 0.6182
6 1 3.4954 1.4646 0.7787
7 6 2.0076 -1.2149 -0.0005
8 1 1.4809 -2.1426 0.1679
9 6 3.3981 -1.2254 -0.2265
10 6 3.9739 -0.3365 -1.1520
11 6 5.3354 -0.3514 -1.3621
12 17 6.0426 0.7517 -2.5009
13 6 6.1464 -1.2461 -0.6745
14 6 5.6043 -2.1326 0.2356
15 6 4.2315 -2.1380 0.4732
16 6 3.6495 -3.0817 1.4421
17 8 2.4699 -3.0108 1.7260
18 8 4.4251 -4.0242 2.0143
19 1 -0.4849 0.8400 0.0004
20 1 3.3505 0.3594 -1.6937
21 1 7.2115 -1.2486 -0.8537
22 1 6.2455 -2.8232 0.7633
23 1 3.9983 -4.6207 2.6445
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000039252820.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:15
Heat of formation + Delta-G solvation = -86.617761 kcal
Electronic energy + Delta-G solvation = -13145.886170 eV
Core-core repulsion = 10563.363633 eV
Total energy + Delta-G solvation = -2582.522537 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 226.018 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-39.30799 -37.62646 -35.80162 -35.06103 -33.81293 -30.76868 -30.10372 -25.83516
-23.11355 -21.78350 -19.95071 -17.83514 -17.16107 -16.30118 -15.61786 -14.60887
-14.56907 -14.17665 -13.74074 -12.94914 -12.65791 -12.57266 -12.02146 -11.40177
-11.20178 -10.99215 -10.85004 -10.69631 -10.42608 -10.22410 -9.95669 -9.42297
-9.11826 -7.99640 -7.84119 -7.15901 -4.76620 1.68084 2.35655 2.82569
2.99340 3.04918 3.15062 3.54393 3.79204 4.05484 4.32084 5.08441
5.73135 5.91767 6.24164 6.32905 6.47687 6.74301 6.88342 7.11255
7.21662 7.35514 7.41502 7.66508 8.18762 8.27245 8.53226 8.99435
9.81078
Molecular weight = 226.02amu
Principal moments of inertia in cm(-1)
A = 0.019216 B = 0.016177 C = 0.009296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1456.770876 B = 1730.436826 C = 3011.243295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.777 5.777
2 C 0.079 3.921
3 Si 0.904 3.096
4 H -0.258 1.258
5 H -0.283 1.283
6 H -0.243 1.243
7 C -0.385 4.385
8 H 0.120 0.880
9 C 0.121 3.879
10 C -0.220 4.220
11 C 0.038 3.962
12 Cl -0.110 7.110
13 C -0.254 4.254
14 C -0.004 4.004
15 C -0.240 4.240
16 C 0.516 3.484
17 O -0.511 6.511
18 O -0.535 6.535
19 H 0.292 0.708
20 H 0.122 0.878
21 H 0.112 0.888
22 H 0.119 0.881
23 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.117 -0.097 -0.208 7.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.399 5.399
2 C -0.144 4.144
3 Si 0.729 3.271
4 H -0.184 1.184
5 H -0.209 1.209
6 H -0.166 1.166
7 C -0.411 4.411
8 H 0.138 0.862
9 C 0.116 3.884
10 C -0.240 4.240
11 C 0.011 3.989
12 Cl -0.081 7.081
13 C -0.274 4.274
14 C -0.023 4.023
15 C -0.242 4.242
16 C 0.365 3.635
17 O -0.401 6.401
18 O -0.346 6.346
19 H 0.103 0.897
20 H 0.140 0.860
21 H 0.130 0.870
22 H 0.137 0.863
23 H 0.251 0.749
Dipole moment (debyes) X Y Z Total
from point charges 6.732 0.388 -0.507 6.762
hybrid contribution 0.016 0.447 0.272 0.524
sum 6.748 0.835 -0.235 6.804
Atomic orbital electron populations
1.69537 1.08266 1.31042 1.31086 1.26393 0.94971 1.01874 0.91120
0.86433 0.80921 0.79329 0.80416 1.18352 1.20912 1.16639 1.20061
0.90422 0.96590 1.34046 0.86212 1.17336 0.93137 0.89123 0.88822
1.21174 0.92507 1.06333 1.03948 1.20876 0.93087 0.92586 0.92303
1.98294 1.84845 1.63571 1.61415 1.20209 0.98471 1.02946 1.05755
1.20908 0.93751 0.94378 0.93272 1.18700 0.93039 1.06899 1.05598
1.20903 0.84078 0.78987 0.79574 1.90869 1.16994 1.70646 1.61590
1.84623 1.46957 1.44928 1.58126 0.89666 0.85992 0.86961 0.86333
0.74869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -20.02 13.92 55.56 0.77 -19.25 14
2 C 0.08 2.02 5.47 -17.30 -0.09 1.92 14
3 Si 0.90 19.97 24.61 -169.99 -4.18 15.78 14
4 H -0.26 -5.45 6.45 56.52 0.36 -5.09 14
5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14
6 H -0.24 -5.54 7.06 56.52 0.40 -5.14 14
7 C -0.39 -10.29 8.10 -37.82 -0.31 -10.59 14
8 H 0.12 3.50 6.30 -52.49 -0.33 3.17 14
9 C 0.12 2.99 5.01 -106.54 -0.53 2.46 14
10 C -0.22 -5.07 6.97 -38.84 -0.27 -5.34 14
11 C 0.04 0.80 6.31 -39.48 -0.25 0.55 14
12 Cl -0.11 -1.99 28.93 -51.86 -1.50 -3.49 14
13 C -0.25 -4.97 9.81 -39.35 -0.39 -5.36 14
14 C 0.00 -0.09 9.60 -39.22 -0.38 -0.47 14
15 C -0.24 -5.51 5.92 -104.39 -0.62 -6.13 14
16 C 0.52 11.46 8.22 34.39 0.28 11.74 14
17 O -0.51 -12.92 14.44 -19.29 -0.28 -13.20 14
18 O -0.53 -9.23 12.69 -40.79 -0.52 -9.75 14
19 H 0.29 6.73 8.29 -40.82 -0.34 6.39 14
20 H 0.12 2.79 4.96 -52.49 -0.26 2.53 14
21 H 0.11 1.91 8.06 -52.48 -0.42 1.49 14
22 H 0.12 2.05 7.61 -52.49 -0.40 1.66 14
23 H 0.40 4.87 9.11 45.56 0.42 5.28 14
LS Contribution 224.95 15.07 3.39 3.39
Total: -1.00 -27.96 224.95 -5.04 -33.00
By element:
Atomic # 1 Polarization: 4.90 SS G_CDS: -0.17 Total: 4.73 kcal
Atomic # 6 Polarization: -8.66 SS G_CDS: -2.55 Total: -11.21 kcal
Atomic # 7 Polarization: -20.02 SS G_CDS: 0.77 Total: -19.25 kcal
Atomic # 8 Polarization: -22.16 SS G_CDS: -0.80 Total: -22.95 kcal
Atomic # 14 Polarization: 19.97 SS G_CDS: -4.18 Total: 15.78 kcal
Atomic # 17 Polarization: -1.99 SS G_CDS: -1.50 Total: -3.49 kcal
Total LS contribution 3.39 Total: 3.39 kcal
Total: -27.96 -5.04 -33.00 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000039252820.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.616 kcal
(2) G-P(sol) polarization free energy of solvation -27.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.002 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds