Wall clock time and date at job start Mon Mar 30 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86805 * 120.00150 * 2 1 4 4 H 1.48503 * 109.46823 * 266.20348 * 3 2 1 5 5 H 1.48498 * 109.47094 * 26.20478 * 3 2 1 6 6 H 1.48493 * 109.47080 * 146.20582 * 3 2 1 7 7 C 1.40282 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99909 * 349.60221 * 7 2 1 9 9 C 1.40875 * 120.00210 * 169.32663 * 7 2 1 10 10 C 1.40654 * 120.32461 * 322.72709 * 9 7 2 11 11 C 1.37764 * 119.87152 * 179.76385 * 10 9 7 12 12 Cl 1.73604 * 119.71975 * 180.23567 * 11 10 9 13 13 C 1.38966 * 120.55141 * 0.52153 * 11 10 9 14 14 C 1.38137 * 120.67357 * 359.73390 * 13 11 10 15 15 C 1.39317 * 120.10202 * 0.02562 * 14 13 11 16 16 C 1.47240 * 120.27698 * 179.97438 * 15 14 13 17 17 O 1.21537 * 120.00260 * 174.06034 * 16 15 14 18 18 O 1.34811 * 119.99809 * 354.06434 * 16 15 14 19 19 H 0.96995 * 119.99595 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.06190 * 0.03139 * 10 9 7 21 21 H 1.08005 * 119.66293 * 179.71793 * 13 11 10 22 22 H 1.08000 * 119.94970 * 179.97438 * 14 13 11 23 23 H 0.96698 * 116.99826 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.5681 2.0000 -1.3970 5 1 1.3999 2.6745 0.6182 6 1 3.4954 1.4646 0.7787 7 6 2.0076 -1.2149 -0.0005 8 1 1.4809 -2.1426 0.1679 9 6 3.3981 -1.2254 -0.2265 10 6 3.9739 -0.3365 -1.1520 11 6 5.3354 -0.3514 -1.3621 12 17 6.0426 0.7517 -2.5009 13 6 6.1464 -1.2461 -0.6745 14 6 5.6043 -2.1326 0.2356 15 6 4.2315 -2.1380 0.4732 16 6 3.6495 -3.0817 1.4421 17 8 2.4699 -3.0108 1.7260 18 8 4.4251 -4.0242 2.0143 19 1 -0.4849 0.8400 0.0004 20 1 3.3505 0.3594 -1.6937 21 1 7.2115 -1.2486 -0.8537 22 1 6.2455 -2.8232 0.7633 23 1 3.9983 -4.6207 2.6445 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039252820.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:15 Heat of formation + Delta-G solvation = -86.617761 kcal Electronic energy + Delta-G solvation = -13145.886170 eV Core-core repulsion = 10563.363633 eV Total energy + Delta-G solvation = -2582.522537 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.30799 -37.62646 -35.80162 -35.06103 -33.81293 -30.76868 -30.10372 -25.83516 -23.11355 -21.78350 -19.95071 -17.83514 -17.16107 -16.30118 -15.61786 -14.60887 -14.56907 -14.17665 -13.74074 -12.94914 -12.65791 -12.57266 -12.02146 -11.40177 -11.20178 -10.99215 -10.85004 -10.69631 -10.42608 -10.22410 -9.95669 -9.42297 -9.11826 -7.99640 -7.84119 -7.15901 -4.76620 1.68084 2.35655 2.82569 2.99340 3.04918 3.15062 3.54393 3.79204 4.05484 4.32084 5.08441 5.73135 5.91767 6.24164 6.32905 6.47687 6.74301 6.88342 7.11255 7.21662 7.35514 7.41502 7.66508 8.18762 8.27245 8.53226 8.99435 9.81078 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.016177 C = 0.009296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.770876 B = 1730.436826 C = 3011.243295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.385 4.385 8 H 0.120 0.880 9 C 0.121 3.879 10 C -0.220 4.220 11 C 0.038 3.962 12 Cl -0.110 7.110 13 C -0.254 4.254 14 C -0.004 4.004 15 C -0.240 4.240 16 C 0.516 3.484 17 O -0.511 6.511 18 O -0.535 6.535 19 H 0.292 0.708 20 H 0.122 0.878 21 H 0.112 0.888 22 H 0.119 0.881 23 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -0.097 -0.208 7.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.411 4.411 8 H 0.138 0.862 9 C 0.116 3.884 10 C -0.240 4.240 11 C 0.011 3.989 12 Cl -0.081 7.081 13 C -0.274 4.274 14 C -0.023 4.023 15 C -0.242 4.242 16 C 0.365 3.635 17 O -0.401 6.401 18 O -0.346 6.346 19 H 0.103 0.897 20 H 0.140 0.860 21 H 0.130 0.870 22 H 0.137 0.863 23 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.732 0.388 -0.507 6.762 hybrid contribution 0.016 0.447 0.272 0.524 sum 6.748 0.835 -0.235 6.804 Atomic orbital electron populations 1.69537 1.08266 1.31042 1.31086 1.26393 0.94971 1.01874 0.91120 0.86433 0.80921 0.79329 0.80416 1.18352 1.20912 1.16639 1.20061 0.90422 0.96590 1.34046 0.86212 1.17336 0.93137 0.89123 0.88822 1.21174 0.92507 1.06333 1.03948 1.20876 0.93087 0.92586 0.92303 1.98294 1.84845 1.63571 1.61415 1.20209 0.98471 1.02946 1.05755 1.20908 0.93751 0.94378 0.93272 1.18700 0.93039 1.06899 1.05598 1.20903 0.84078 0.78987 0.79574 1.90869 1.16994 1.70646 1.61590 1.84623 1.46957 1.44928 1.58126 0.89666 0.85992 0.86961 0.86333 0.74869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.02 13.92 55.56 0.77 -19.25 14 2 C 0.08 2.02 5.47 -17.30 -0.09 1.92 14 3 Si 0.90 19.97 24.61 -169.99 -4.18 15.78 14 4 H -0.26 -5.45 6.45 56.52 0.36 -5.09 14 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.24 -5.54 7.06 56.52 0.40 -5.14 14 7 C -0.39 -10.29 8.10 -37.82 -0.31 -10.59 14 8 H 0.12 3.50 6.30 -52.49 -0.33 3.17 14 9 C 0.12 2.99 5.01 -106.54 -0.53 2.46 14 10 C -0.22 -5.07 6.97 -38.84 -0.27 -5.34 14 11 C 0.04 0.80 6.31 -39.48 -0.25 0.55 14 12 Cl -0.11 -1.99 28.93 -51.86 -1.50 -3.49 14 13 C -0.25 -4.97 9.81 -39.35 -0.39 -5.36 14 14 C 0.00 -0.09 9.60 -39.22 -0.38 -0.47 14 15 C -0.24 -5.51 5.92 -104.39 -0.62 -6.13 14 16 C 0.52 11.46 8.22 34.39 0.28 11.74 14 17 O -0.51 -12.92 14.44 -19.29 -0.28 -13.20 14 18 O -0.53 -9.23 12.69 -40.79 -0.52 -9.75 14 19 H 0.29 6.73 8.29 -40.82 -0.34 6.39 14 20 H 0.12 2.79 4.96 -52.49 -0.26 2.53 14 21 H 0.11 1.91 8.06 -52.48 -0.42 1.49 14 22 H 0.12 2.05 7.61 -52.49 -0.40 1.66 14 23 H 0.40 4.87 9.11 45.56 0.42 5.28 14 LS Contribution 224.95 15.07 3.39 3.39 Total: -1.00 -27.96 224.95 -5.04 -33.00 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -0.17 Total: 4.73 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.55 Total: -11.21 kcal Atomic # 7 Polarization: -20.02 SS G_CDS: 0.77 Total: -19.25 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.80 Total: -22.95 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.18 Total: 15.78 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.50 Total: -3.49 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.96 -5.04 -33.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039252820.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.616 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds