Wall clock time and date at job start Mon Mar 30 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86787 * 120.00244 * 2 1 4 4 H 1.48506 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47290 * 299.99785 * 3 2 1 6 6 H 1.48503 * 109.47402 * 60.00070 * 3 2 1 7 7 C 1.40290 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99643 * 170.76323 * 7 2 1 9 9 C 1.40808 * 120.00364 * 350.76455 * 7 2 1 10 10 C 1.40743 * 120.31181 * 325.81551 * 9 7 2 11 11 C 1.37531 * 119.90167 * 179.97438 * 10 9 7 12 12 C 1.38991 * 120.57034 * 359.97438 * 11 10 9 13 13 Cl 1.73603 * 119.67174 * 180.02562 * 12 11 10 14 14 C 1.38374 * 120.65200 * 359.78518 * 12 11 10 15 15 C 1.39243 * 120.06495 * 0.47063 * 14 12 11 16 16 C 1.47289 * 120.27760 * 179.79273 * 15 14 12 17 17 O 1.21540 * 119.99878 * 174.22376 * 16 15 14 18 18 O 1.34805 * 120.00207 * 354.49305 * 16 15 14 19 19 H 0.97001 * 119.99364 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.05150 * 0.02562 * 10 9 7 21 21 H 1.08002 * 119.71020 * 180.02562 * 11 10 9 22 22 H 1.07995 * 119.96691 * 180.23812 * 14 12 11 23 23 H 0.96704 * 116.99804 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 3.7003 1.3462 0.0006 5 1 1.8817 2.3963 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0076 -1.2150 0.0005 8 1 3.0771 -1.2212 -0.1496 9 6 1.3172 -2.4264 0.1968 10 6 0.1990 -2.4766 1.0500 11 6 -0.4694 -3.6642 1.2352 12 6 -0.0509 -4.8196 0.5857 13 17 -0.9123 -6.3060 0.8358 14 6 1.0424 -4.7957 -0.2621 15 6 1.7421 -3.6090 -0.4649 16 6 2.9093 -3.5793 -1.3628 17 8 3.4523 -2.5225 -1.6187 18 8 3.3719 -4.7234 -1.9050 19 1 -0.4849 0.8401 0.0004 20 1 -0.1342 -1.5837 1.5580 21 1 -1.3273 -3.6991 1.8903 22 1 1.3556 -5.6991 -0.7641 23 1 4.1406 -4.6537 -2.4877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039252821.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:20 Heat of formation + Delta-G solvation = -107.331963 kcal Electronic energy + Delta-G solvation = -13040.171313 eV Core-core repulsion = 10456.750541 eV Total energy + Delta-G solvation = -2583.420772 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.93828 -39.10106 -37.17243 -36.63455 -35.54835 -32.00041 -31.53995 -27.52405 -24.96562 -23.14172 -21.68546 -19.48667 -18.72978 -17.77160 -17.21693 -16.22557 -16.16906 -15.75816 -15.20164 -14.58849 -14.01273 -13.91478 -13.49587 -13.13387 -12.93069 -12.56042 -12.30482 -12.19464 -12.04730 -11.76397 -11.56716 -11.15108 -10.79581 -9.69855 -9.29766 -8.83334 -6.54512 0.22395 0.76163 1.36902 1.44334 1.52031 1.58797 1.96467 2.17497 2.55619 2.60995 3.47420 4.26354 4.32810 4.79732 4.92728 5.03602 5.14778 5.31965 5.41484 5.70615 5.81097 5.95157 6.05074 6.49445 6.64311 6.72737 7.41300 8.13342 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.010320 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.563734 B = 2712.523196 C = 3617.041689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.252 1.252 7 C -0.439 4.439 8 H 0.091 0.909 9 C 0.119 3.881 10 C -0.154 4.154 11 C -0.072 4.072 12 C -0.157 4.157 13 Cl -0.094 7.094 14 C -0.018 4.018 15 C -0.269 4.269 16 C 0.524 3.476 17 O -0.551 6.551 18 O -0.518 6.518 19 H 0.298 0.702 20 H 0.121 0.879 21 H 0.130 0.870 22 H 0.133 0.867 23 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -3.514 0.576 3.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.109 0.891 9 C 0.115 3.885 10 C -0.173 4.173 11 C -0.091 4.091 12 C -0.184 4.184 13 Cl -0.065 7.065 14 C -0.037 4.037 15 C -0.272 4.272 16 C 0.374 3.626 17 O -0.445 6.445 18 O -0.332 6.332 19 H 0.109 0.891 20 H 0.139 0.861 21 H 0.148 0.852 22 H 0.151 0.849 23 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 0.163 -3.255 0.778 3.351 hybrid contribution 0.630 0.565 -0.515 0.991 sum 0.793 -2.690 0.263 2.817 Atomic orbital electron populations 1.69699 1.08809 1.31683 1.32401 1.26926 0.95687 1.04683 0.91119 0.85087 0.79158 0.75706 0.79444 1.18938 1.18958 1.17572 1.20348 0.97045 0.90900 1.38296 0.89071 1.17852 0.91040 0.91801 0.87791 1.21235 0.98516 0.96716 1.00863 1.20964 0.98832 0.91090 0.98228 1.20271 1.00777 0.87370 1.09985 1.98245 1.77080 1.34695 1.96522 1.20891 0.92049 0.96662 0.94073 1.18866 1.02463 0.96522 1.09366 1.20801 0.83080 0.80556 0.78116 1.90775 1.59771 1.32457 1.61502 1.84564 1.50471 1.36079 1.62047 0.89066 0.86144 0.85231 0.84937 0.72112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.94 11.14 21.88 0.24 -38.70 14 2 C 0.03 1.65 5.25 85.37 0.45 2.10 14 3 Si 0.99 37.57 29.57 68.60 2.03 39.60 14 4 H -0.27 -10.45 7.11 99.48 0.71 -9.74 14 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 14 6 H -0.25 -8.77 7.11 99.48 0.71 -8.06 14 7 C -0.44 -23.27 7.67 23.40 0.18 -23.09 14 8 H 0.09 5.04 5.91 -2.91 -0.02 5.03 14 9 C 0.12 6.17 5.51 -21.10 -0.12 6.06 14 10 C -0.15 -7.40 8.62 22.72 0.20 -7.20 14 11 C -0.07 -3.05 9.79 22.28 0.22 -2.83 14 12 C -0.16 -6.43 6.33 22.48 0.14 -6.29 14 13 Cl -0.09 -3.20 28.93 -2.72 -0.08 -3.28 14 14 C -0.02 -0.76 9.37 22.54 0.21 -0.55 14 15 C -0.27 -12.97 5.92 -19.72 -0.12 -13.08 14 16 C 0.52 23.81 8.22 70.20 0.58 24.39 14 17 O -0.55 -27.93 14.37 19.70 0.28 -27.65 14 18 O -0.52 -17.90 12.69 -57.17 -0.73 -18.63 14 19 H 0.30 12.85 8.29 -92.71 -0.77 12.08 14 20 H 0.12 5.87 6.59 -2.91 -0.02 5.85 14 21 H 0.13 4.76 8.06 -2.91 -0.02 4.74 14 22 H 0.13 5.06 7.61 -2.91 -0.02 5.04 14 23 H 0.42 9.87 9.11 -74.05 -0.67 9.19 14 Total: -1.00 -58.17 230.30 4.09 -54.09 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.60 Total: 15.07 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 1.74 Total: -20.50 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.24 Total: -38.70 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.44 Total: -46.28 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 17 Polarization: -3.20 SS G_CDS: -0.08 Total: -3.28 kcal Total: -58.17 4.09 -54.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039252821.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.247 kcal (2) G-P(sol) polarization free energy of solvation -58.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds