Wall clock time and date at job start Mon Mar 30 2020 03:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47035 * 2 1 4 4 C 1.46902 * 110.99839 * 78.37131 * 3 2 1 5 5 H 1.08997 * 109.47296 * 50.07905 * 4 3 2 6 6 C 1.53005 * 109.46916 * 170.07717 * 4 3 2 7 7 C 1.50703 * 109.47161 * 290.07591 * 4 3 2 8 8 H 1.08002 * 119.99409 * 354.52486 * 7 4 3 9 9 C 1.37877 * 120.00084 * 174.80013 * 7 4 3 10 10 N 1.31517 * 119.99954 * 359.72950 * 9 7 4 11 11 Si 1.86797 * 120.00024 * 179.72462 * 9 7 4 12 12 H 1.48496 * 109.47106 * 59.99846 * 11 9 7 13 13 H 1.48493 * 109.47251 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47268 * 300.00108 * 11 9 7 15 15 C 1.46898 * 111.00182 * 202.32273 * 3 2 1 16 16 C 1.52998 * 109.47185 * 65.96295 * 15 3 2 17 17 C 1.53000 * 109.47441 * 180.02562 * 16 15 3 18 18 C 1.53003 * 109.46998 * 59.99954 * 17 16 15 19 19 C 1.52998 * 109.47062 * 300.00278 * 18 17 16 20 20 C 1.53000 * 109.47441 * 59.99993 * 19 18 17 21 21 H 1.09003 * 109.46791 * 287.05828 * 1 2 3 22 22 H 1.08994 * 109.47639 * 47.06069 * 1 2 3 23 23 H 1.09001 * 109.47374 * 167.06153 * 1 2 3 24 24 H 1.08997 * 109.46885 * 240.00114 * 2 1 3 25 25 H 1.09002 * 109.47485 * 120.00197 * 2 1 3 26 26 H 1.09002 * 109.46795 * 172.33891 * 6 4 3 27 27 H 1.08998 * 109.47081 * 292.34140 * 6 4 3 28 28 H 1.08996 * 109.46960 * 52.34321 * 6 4 3 29 29 H 0.96999 * 119.99661 * 180.02562 * 10 9 7 30 30 H 1.08997 * 109.47585 * 185.96580 * 15 3 2 31 31 H 1.09005 * 109.47322 * 299.99997 * 16 15 3 32 32 H 1.09001 * 109.47274 * 60.00190 * 16 15 3 33 33 H 1.08997 * 109.47389 * 300.00322 * 17 16 15 34 34 H 1.08999 * 109.47252 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46908 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.46992 * 59.99942 * 18 17 16 37 37 H 1.09006 * 109.46943 * 299.99694 * 19 18 17 38 38 H 1.09004 * 109.46867 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47252 * 180.02562 * 20 19 18 40 40 H 1.08997 * 109.46885 * 59.99522 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.9344 1.9734 1.3433 5 1 2.3910 1.2971 2.0659 6 6 2.6734 3.3131 1.3610 7 6 0.4880 2.1928 1.7049 8 1 -0.2855 2.0054 0.9747 9 6 0.1524 2.6380 2.9659 10 7 1.0943 2.8662 3.8549 11 14 -1.6400 2.9173 3.4116 12 1 -2.3896 1.6433 3.2696 13 1 -1.7327 3.3930 4.8151 14 1 -2.2226 3.9381 2.5039 15 6 3.3912 1.4585 -0.5209 16 6 3.3964 1.0687 -2.0004 17 6 4.8250 1.1446 -2.5428 18 6 5.7200 0.1827 -1.7588 19 6 5.7147 0.5725 -0.2793 20 6 4.2861 0.4965 0.2631 21 1 -0.3633 0.3015 0.9825 22 1 -0.3634 0.7000 -0.7523 23 1 -0.3634 -1.0016 -0.2301 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.4966 3.8129 2.3134 27 1 3.7421 3.1402 1.2341 28 1 2.3077 3.9404 0.5481 29 1 0.8582 3.1791 4.7422 30 1 3.7673 2.4757 -0.4118 31 1 3.0204 0.0514 -2.1095 32 1 2.7585 1.7537 -2.5589 33 1 5.2015 2.1617 -2.4337 34 1 4.8288 0.8665 -3.5967 35 1 6.7378 0.2371 -2.1449 36 1 5.3435 -0.8344 -1.8679 37 1 6.0913 1.5896 -0.1702 38 1 6.3527 -0.1126 0.2791 39 1 4.2824 0.7747 1.3170 40 1 3.9097 -0.5205 0.1539 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:18 Heat of formation + Delta-G solvation = -29.366870 kcal Electronic energy + Delta-G solvation = -16997.344375 eV Core-core repulsion = 14617.646298 eV Total energy + Delta-G solvation = -2379.698077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54688 -37.30887 -34.67832 -32.46870 -31.60158 -31.11705 -28.10268 -27.04539 -23.78926 -23.43578 -23.01631 -21.17460 -19.66817 -18.36034 -16.88507 -16.57541 -15.87518 -15.65349 -15.28444 -15.10956 -14.73606 -14.40960 -13.79638 -13.42839 -13.34888 -13.00393 -12.92604 -12.78294 -12.66457 -12.53200 -12.27654 -12.18549 -12.04965 -11.84913 -11.68599 -11.39071 -11.30164 -11.04839 -10.80030 -10.63569 -10.38060 -8.78191 -8.05646 -6.12812 1.42872 1.44275 1.51301 2.45324 3.23559 3.38536 3.84182 3.95960 4.14081 4.31424 4.37523 4.43631 4.57684 4.63073 4.68028 4.75169 4.77783 4.81892 4.90286 4.91100 4.98165 5.11611 5.17242 5.19587 5.21459 5.28921 5.31733 5.36197 5.41474 5.49733 5.58325 5.63962 5.68242 5.81168 5.86909 6.34915 6.55754 6.87621 7.01780 7.53961 9.01222 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.007985 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.747103 B = 3505.647231 C = 3826.956564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 N -0.535 5.535 4 C 0.222 3.778 5 H -0.036 1.036 6 C -0.120 4.120 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.005 3.995 10 N -0.928 5.928 11 Si 0.951 3.049 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.076 3.924 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.143 4.143 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.048 0.952 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -5.241 -10.938 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 N -0.259 5.259 4 C 0.115 3.885 5 H -0.018 1.018 6 C -0.178 4.178 7 C -0.545 4.545 8 H 0.092 0.908 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.778 3.222 12 H -0.196 1.196 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.032 4.032 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.182 4.182 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.285 -4.898 -11.063 13.634 hybrid contribution -0.418 -0.085 1.593 1.649 sum 5.867 -4.984 -9.471 12.204 Atomic orbital electron populations 1.21978 0.95477 1.00150 1.02422 1.21861 0.96268 0.89283 0.98535 1.62375 1.20363 1.17772 1.25352 1.18990 0.94958 0.90912 0.83688 1.01808 1.21692 0.96242 0.99428 1.00484 1.21714 0.93214 1.42331 0.97275 0.90764 1.25710 1.00892 0.95938 0.96674 1.70066 1.33741 1.47702 1.05324 0.85708 0.81003 0.78697 0.76840 1.19570 1.21467 1.19735 1.21867 0.87683 0.98584 0.95081 1.21548 0.97547 1.01305 0.93678 1.21510 0.93909 0.99868 0.99778 1.21512 1.00307 0.99287 0.93856 1.21468 0.94925 1.01464 0.97100 1.22131 0.97445 1.00008 0.98658 0.92761 0.93055 0.92272 0.90432 0.97759 0.93320 0.95442 0.94649 0.93345 0.91355 0.91975 0.92142 0.92168 0.90195 0.90360 0.91908 0.92437 0.91746 0.95301 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 8.58 71.98 0.62 -4.88 16 2 C 0.07 2.67 4.23 86.30 0.37 3.04 16 3 N -0.54 -22.84 4.32 -850.28 -3.67 -26.51 16 4 C 0.22 11.39 1.47 44.17 0.06 11.45 16 5 H -0.04 -2.08 6.97 -2.39 -0.02 -2.10 16 6 C -0.12 -5.99 8.05 71.98 0.58 -5.41 16 7 C -0.51 -27.88 6.67 25.60 0.17 -27.71 16 8 H 0.07 4.00 5.40 -2.91 -0.02 3.99 16 9 C 0.01 0.30 5.28 84.65 0.45 0.74 16 10 N -0.93 -54.83 11.72 21.45 0.25 -54.58 16 11 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 C 0.08 2.72 1.72 44.92 0.08 2.80 16 16 C -0.10 -2.90 5.18 30.59 0.16 -2.74 16 17 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 18 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 19 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16 20 C -0.14 -4.84 4.55 30.60 0.14 -4.70 16 21 H 0.05 2.44 5.53 -2.39 -0.01 2.42 16 22 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.08 2.57 5.76 -2.39 -0.01 2.55 16 25 H 0.00 0.18 7.24 -2.39 -0.02 0.16 16 26 H 0.05 2.69 6.37 -2.39 -0.02 2.67 16 27 H 0.03 1.22 6.62 -2.39 -0.02 1.21 16 28 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.07 2.61 5.73 -2.39 -0.01 2.59 16 31 H 0.06 1.69 6.23 -2.38 -0.01 1.68 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 1.16 7.00 -2.39 -0.02 1.14 16 40 H 0.06 1.91 6.77 -2.39 -0.02 1.89 16 Total: -1.00 -60.28 289.62 2.76 -57.52 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.99 Total: 11.73 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.16 Total: -34.58 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -3.42 Total: -81.09 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.28 2.76 -57.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.151 kcal (2) G-P(sol) polarization free energy of solvation -60.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds