Wall clock time and date at job start Mon Mar 30 2020 03:00:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46896 * 109.47035 * 2 1
4 4 C 1.46902 * 110.99839 * 78.37131 * 3 2 1
5 5 H 1.08997 * 109.47296 * 50.07905 * 4 3 2
6 6 C 1.53005 * 109.46916 * 170.07717 * 4 3 2
7 7 C 1.50703 * 109.47161 * 290.07591 * 4 3 2
8 8 H 1.08002 * 119.99409 * 354.52486 * 7 4 3
9 9 C 1.37877 * 120.00084 * 174.80013 * 7 4 3
10 10 N 1.31517 * 119.99954 * 359.72950 * 9 7 4
11 11 Si 1.86797 * 120.00024 * 179.72462 * 9 7 4
12 12 H 1.48496 * 109.47106 * 59.99846 * 11 9 7
13 13 H 1.48493 * 109.47251 * 180.02562 * 11 9 7
14 14 H 1.48508 * 109.47268 * 300.00108 * 11 9 7
15 15 C 1.46898 * 111.00182 * 202.32273 * 3 2 1
16 16 C 1.52998 * 109.47185 * 65.96295 * 15 3 2
17 17 C 1.53000 * 109.47441 * 180.02562 * 16 15 3
18 18 C 1.53003 * 109.46998 * 59.99954 * 17 16 15
19 19 C 1.52998 * 109.47062 * 300.00278 * 18 17 16
20 20 C 1.53000 * 109.47441 * 59.99993 * 19 18 17
21 21 H 1.09003 * 109.46791 * 287.05828 * 1 2 3
22 22 H 1.08994 * 109.47639 * 47.06069 * 1 2 3
23 23 H 1.09001 * 109.47374 * 167.06153 * 1 2 3
24 24 H 1.08997 * 109.46885 * 240.00114 * 2 1 3
25 25 H 1.09002 * 109.47485 * 120.00197 * 2 1 3
26 26 H 1.09002 * 109.46795 * 172.33891 * 6 4 3
27 27 H 1.08998 * 109.47081 * 292.34140 * 6 4 3
28 28 H 1.08996 * 109.46960 * 52.34321 * 6 4 3
29 29 H 0.96999 * 119.99661 * 180.02562 * 10 9 7
30 30 H 1.08997 * 109.47585 * 185.96580 * 15 3 2
31 31 H 1.09005 * 109.47322 * 299.99997 * 16 15 3
32 32 H 1.09001 * 109.47274 * 60.00190 * 16 15 3
33 33 H 1.08997 * 109.47389 * 300.00322 * 17 16 15
34 34 H 1.08999 * 109.47252 * 179.97438 * 17 16 15
35 35 H 1.08998 * 109.46908 * 180.02562 * 18 17 16
36 36 H 1.09006 * 109.46992 * 59.99942 * 18 17 16
37 37 H 1.09006 * 109.46943 * 299.99694 * 19 18 17
38 38 H 1.09004 * 109.46867 * 180.02562 * 19 18 17
39 39 H 1.08999 * 109.47252 * 180.02562 * 20 19 18
40 40 H 1.08997 * 109.46885 * 59.99522 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.9344 1.9734 1.3433
5 1 2.3910 1.2971 2.0659
6 6 2.6734 3.3131 1.3610
7 6 0.4880 2.1928 1.7049
8 1 -0.2855 2.0054 0.9747
9 6 0.1524 2.6380 2.9659
10 7 1.0943 2.8662 3.8549
11 14 -1.6400 2.9173 3.4116
12 1 -2.3896 1.6433 3.2696
13 1 -1.7327 3.3930 4.8151
14 1 -2.2226 3.9381 2.5039
15 6 3.3912 1.4585 -0.5209
16 6 3.3964 1.0687 -2.0004
17 6 4.8250 1.1446 -2.5428
18 6 5.7200 0.1827 -1.7588
19 6 5.7147 0.5725 -0.2793
20 6 4.2861 0.4965 0.2631
21 1 -0.3633 0.3015 0.9825
22 1 -0.3634 0.7000 -0.7523
23 1 -0.3634 -1.0016 -0.2301
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5139 0.8900
26 1 2.4966 3.8129 2.3134
27 1 3.7421 3.1402 1.2341
28 1 2.3077 3.9404 0.5481
29 1 0.8582 3.1791 4.7422
30 1 3.7673 2.4757 -0.4118
31 1 3.0204 0.0514 -2.1095
32 1 2.7585 1.7537 -2.5589
33 1 5.2015 2.1617 -2.4337
34 1 4.8288 0.8665 -3.5967
35 1 6.7378 0.2371 -2.1449
36 1 5.3435 -0.8344 -1.8679
37 1 6.0913 1.5896 -0.1702
38 1 6.3527 -0.1126 0.2791
39 1 4.2824 0.7747 1.3170
40 1 3.9097 -0.5205 0.1539
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000048246559.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:18
Heat of formation + Delta-G solvation = -29.366870 kcal
Electronic energy + Delta-G solvation = -16997.344375 eV
Core-core repulsion = 14617.646298 eV
Total energy + Delta-G solvation = -2379.698077 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.54688 -37.30887 -34.67832 -32.46870 -31.60158 -31.11705 -28.10268 -27.04539
-23.78926 -23.43578 -23.01631 -21.17460 -19.66817 -18.36034 -16.88507 -16.57541
-15.87518 -15.65349 -15.28444 -15.10956 -14.73606 -14.40960 -13.79638 -13.42839
-13.34888 -13.00393 -12.92604 -12.78294 -12.66457 -12.53200 -12.27654 -12.18549
-12.04965 -11.84913 -11.68599 -11.39071 -11.30164 -11.04839 -10.80030 -10.63569
-10.38060 -8.78191 -8.05646 -6.12812 1.42872 1.44275 1.51301 2.45324
3.23559 3.38536 3.84182 3.95960 4.14081 4.31424 4.37523 4.43631
4.57684 4.63073 4.68028 4.75169 4.77783 4.81892 4.90286 4.91100
4.98165 5.11611 5.17242 5.19587 5.21459 5.28921 5.31733 5.36197
5.41474 5.49733 5.58325 5.63962 5.68242 5.81168 5.86909 6.34915
6.55754 6.87621 7.01780 7.53961 9.01222
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.040881 B = 0.007985 C = 0.007315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 684.747103 B = 3505.647231 C = 3826.956564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.069 3.931
3 N -0.535 5.535
4 C 0.222 3.778
5 H -0.036 1.036
6 C -0.120 4.120
7 C -0.507 4.507
8 H 0.074 0.926
9 C 0.005 3.995
10 N -0.928 5.928
11 Si 0.951 3.049
12 H -0.271 1.271
13 H -0.289 1.289
14 H -0.272 1.272
15 C 0.076 3.924
16 C -0.103 4.103
17 C -0.113 4.113
18 C -0.112 4.112
19 C -0.111 4.111
20 C -0.143 4.143
21 H 0.053 0.947
22 H 0.050 0.950
23 H 0.058 0.942
24 H 0.078 0.922
25 H 0.004 0.996
26 H 0.048 0.952
27 H 0.027 0.973
28 H 0.034 0.966
29 H 0.258 0.742
30 H 0.068 0.932
31 H 0.062 0.938
32 H 0.060 0.940
33 H 0.060 0.940
34 H 0.079 0.921
35 H 0.078 0.922
36 H 0.062 0.938
37 H 0.057 0.943
38 H 0.064 0.936
39 H 0.028 0.972
40 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.593 -5.241 -10.938 13.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.059 4.059
3 N -0.259 5.259
4 C 0.115 3.885
5 H -0.018 1.018
6 C -0.178 4.178
7 C -0.545 4.545
8 H 0.092 0.908
9 C -0.192 4.192
10 N -0.568 5.568
11 Si 0.778 3.222
12 H -0.196 1.196
13 H -0.215 1.215
14 H -0.197 1.197
15 C -0.032 4.032
16 C -0.141 4.141
17 C -0.151 4.151
18 C -0.150 4.150
19 C -0.150 4.150
20 C -0.182 4.182
21 H 0.072 0.928
22 H 0.069 0.931
23 H 0.077 0.923
24 H 0.096 0.904
25 H 0.022 0.978
26 H 0.067 0.933
27 H 0.046 0.954
28 H 0.054 0.946
29 H 0.067 0.933
30 H 0.086 0.914
31 H 0.080 0.920
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.098 0.902
35 H 0.096 0.904
36 H 0.081 0.919
37 H 0.076 0.924
38 H 0.083 0.917
39 H 0.047 0.953
40 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 6.285 -4.898 -11.063 13.634
hybrid contribution -0.418 -0.085 1.593 1.649
sum 5.867 -4.984 -9.471 12.204
Atomic orbital electron populations
1.21978 0.95477 1.00150 1.02422 1.21861 0.96268 0.89283 0.98535
1.62375 1.20363 1.17772 1.25352 1.18990 0.94958 0.90912 0.83688
1.01808 1.21692 0.96242 0.99428 1.00484 1.21714 0.93214 1.42331
0.97275 0.90764 1.25710 1.00892 0.95938 0.96674 1.70066 1.33741
1.47702 1.05324 0.85708 0.81003 0.78697 0.76840 1.19570 1.21467
1.19735 1.21867 0.87683 0.98584 0.95081 1.21548 0.97547 1.01305
0.93678 1.21510 0.93909 0.99868 0.99778 1.21512 1.00307 0.99287
0.93856 1.21468 0.94925 1.01464 0.97100 1.22131 0.97445 1.00008
0.98658 0.92761 0.93055 0.92272 0.90432 0.97759 0.93320 0.95442
0.94649 0.93345 0.91355 0.91975 0.92142 0.92168 0.90195 0.90360
0.91908 0.92437 0.91746 0.95301 0.92452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.50 8.58 71.98 0.62 -4.88 16
2 C 0.07 2.67 4.23 86.30 0.37 3.04 16
3 N -0.54 -22.84 4.32 -850.28 -3.67 -26.51 16
4 C 0.22 11.39 1.47 44.17 0.06 11.45 16
5 H -0.04 -2.08 6.97 -2.39 -0.02 -2.10 16
6 C -0.12 -5.99 8.05 71.98 0.58 -5.41 16
7 C -0.51 -27.88 6.67 25.60 0.17 -27.71 16
8 H 0.07 4.00 5.40 -2.91 -0.02 3.99 16
9 C 0.01 0.30 5.28 84.65 0.45 0.74 16
10 N -0.93 -54.83 11.72 21.45 0.25 -54.58 16
11 Si 0.95 44.40 29.54 68.60 2.03 46.42 16
12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
13 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16
14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16
15 C 0.08 2.72 1.72 44.92 0.08 2.80 16
16 C -0.10 -2.90 5.18 30.59 0.16 -2.74 16
17 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16
18 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16
19 C -0.11 -2.89 5.92 30.59 0.18 -2.71 16
20 C -0.14 -4.84 4.55 30.60 0.14 -4.70 16
21 H 0.05 2.44 5.53 -2.39 -0.01 2.42 16
22 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16
23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
24 H 0.08 2.57 5.76 -2.39 -0.01 2.55 16
25 H 0.00 0.18 7.24 -2.39 -0.02 0.16 16
26 H 0.05 2.69 6.37 -2.39 -0.02 2.67 16
27 H 0.03 1.22 6.62 -2.39 -0.02 1.21 16
28 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16
29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16
30 H 0.07 2.61 5.73 -2.39 -0.01 2.59 16
31 H 0.06 1.69 6.23 -2.38 -0.01 1.68 16
32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16
37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16
38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16
39 H 0.03 1.16 7.00 -2.39 -0.02 1.14 16
40 H 0.06 1.91 6.77 -2.39 -0.02 1.89 16
Total: -1.00 -60.28 289.62 2.76 -57.52
By element:
Atomic # 1 Polarization: 10.74 SS G_CDS: 0.99 Total: 11.73 kcal
Atomic # 6 Polarization: -37.74 SS G_CDS: 3.16 Total: -34.58 kcal
Atomic # 7 Polarization: -77.68 SS G_CDS: -3.42 Total: -81.09 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal
Total: -60.28 2.76 -57.52 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000048246559.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.151 kcal
(2) G-P(sol) polarization free energy of solvation -60.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds