Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47228 * 2 1 4 4 C 1.46896 * 111.00138 * 283.00080 * 3 2 1 5 5 H 1.09007 * 109.46992 * 315.80613 * 4 3 2 6 6 C 1.53004 * 109.47166 * 195.80961 * 4 3 2 7 7 C 1.50694 * 109.47425 * 75.80615 * 4 3 2 8 8 H 1.07997 * 120.00246 * 2.26692 * 7 4 3 9 9 C 1.37878 * 120.00244 * 182.26509 * 7 4 3 10 10 N 1.31513 * 120.00487 * 196.88001 * 9 7 4 11 11 Si 1.86807 * 119.99788 * 16.87539 * 9 7 4 12 12 H 1.48502 * 109.46728 * 180.02562 * 11 9 7 13 13 H 1.48496 * 109.46860 * 60.00182 * 11 9 7 14 14 H 1.48501 * 109.47105 * 300.00024 * 11 9 7 15 15 C 1.46898 * 111.00108 * 159.04417 * 3 2 1 16 16 C 1.52997 * 109.47212 * 52.75487 * 15 3 2 17 17 C 1.52997 * 109.47063 * 179.97438 * 16 15 3 18 18 C 1.53007 * 109.47155 * 60.00443 * 17 16 15 19 19 C 1.53003 * 109.46781 * 300.00064 * 18 17 16 20 20 C 1.52997 * 109.47328 * 60.00042 * 19 18 17 21 21 H 1.08993 * 109.47058 * 68.12282 * 1 2 3 22 22 H 1.09000 * 109.46748 * 188.12374 * 1 2 3 23 23 H 1.09000 * 109.46801 * 308.11743 * 1 2 3 24 24 H 1.09005 * 109.46986 * 239.99928 * 2 1 3 25 25 H 1.08997 * 109.47124 * 120.00264 * 2 1 3 26 26 H 1.08999 * 109.47095 * 187.35543 * 6 4 3 27 27 H 1.09003 * 109.46765 * 307.35367 * 6 4 3 28 28 H 1.09000 * 109.47180 * 67.35139 * 6 4 3 29 29 H 0.97010 * 119.99575 * 354.93276 * 10 9 7 30 30 H 1.09002 * 109.47291 * 172.76258 * 15 3 2 31 31 H 1.08995 * 109.47303 * 300.00456 * 16 15 3 32 32 H 1.09004 * 109.46866 * 60.00181 * 16 15 3 33 33 H 1.08995 * 109.47482 * 300.00406 * 17 16 15 34 34 H 1.09004 * 109.47022 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47045 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.46705 * 59.99877 * 18 17 16 37 37 H 1.09000 * 109.46626 * 299.99310 * 19 18 17 38 38 H 1.09004 * 109.46874 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47022 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47482 * 59.99765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.9044 1.9841 -1.3362 5 1 2.2486 1.2709 -2.0852 6 6 2.7628 3.2489 -1.4039 7 6 0.4647 2.3392 -1.6050 8 1 -0.2835 2.1735 -0.8440 9 6 0.1027 2.8756 -2.8225 10 7 -1.0541 3.4874 -2.9537 11 14 1.2553 2.7335 -4.2856 12 1 0.6377 3.3869 -5.4675 13 1 1.5017 1.2999 -4.5842 14 1 2.5431 3.4014 -3.9680 15 6 3.4027 1.4544 0.4905 16 6 4.2738 0.4758 -0.2997 17 6 5.7143 0.5486 0.2108 18 6 5.7488 0.1782 1.6949 19 6 4.8776 1.1568 2.4851 20 6 3.4371 1.0840 1.9747 21 1 -0.3633 0.3829 -0.9536 22 1 -0.3633 -1.0174 0.1452 23 1 -0.3633 0.6344 0.8085 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.5772 3.7640 -2.3464 27 1 2.5064 3.9068 -0.5735 28 1 3.8164 2.9768 -1.3399 29 1 -1.6838 3.4975 -2.2158 30 1 3.7840 2.4672 0.3602 31 1 3.8925 -0.5369 -0.1694 32 1 4.2496 0.7399 -1.3569 33 1 6.0953 1.5613 0.0801 34 1 6.3348 -0.1490 -0.3519 35 1 6.7751 0.2296 2.0585 36 1 5.3677 -0.8346 1.8256 37 1 5.2587 2.1696 2.3544 38 1 4.9018 0.8927 3.5424 39 1 2.8166 1.7815 2.5373 40 1 3.0560 0.0712 2.1053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -11.194041 kcal Electronic energy + Delta-G solvation = -17071.721435 eV Core-core repulsion = 14692.811391 eV Total energy + Delta-G solvation = -2378.910044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27135 -35.97848 -32.73729 -31.11854 -30.49259 -29.85467 -26.74245 -24.62955 -22.52209 -22.10195 -21.47142 -19.67957 -18.21996 -17.33213 -15.50005 -15.01862 -14.45711 -14.05932 -13.86792 -13.79367 -13.37503 -12.97945 -12.48528 -12.21550 -11.91043 -11.79331 -11.46242 -11.32767 -11.02145 -10.92443 -10.83224 -10.55012 -10.49401 -10.35777 -10.00393 -9.91956 -9.85249 -9.58223 -9.42980 -8.62345 -8.16710 -7.20875 -6.35522 -3.92367 3.38706 3.44179 3.61450 4.53050 4.70726 4.90565 4.99476 5.20101 5.34119 5.44313 5.47424 5.67846 5.71016 5.78480 5.81522 5.89873 6.00163 6.13966 6.17057 6.22533 6.31441 6.33072 6.34553 6.41225 6.46084 6.51594 6.63660 6.69113 6.70488 6.76191 6.90972 7.03235 7.30012 7.40239 7.95776 8.18072 8.41700 8.55187 9.10929 9.72377 11.03929 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.009079 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.958732 B = 3083.277728 C = 3456.361426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.066 3.934 3 N -0.518 5.518 4 C 0.190 3.810 5 H -0.010 1.010 6 C -0.157 4.157 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.026 3.974 10 N -0.911 5.911 11 Si 1.040 2.960 12 H -0.287 1.287 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.076 3.924 16 C -0.151 4.151 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.110 4.110 21 H 0.088 0.912 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.267 0.733 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.793 -6.219 7.274 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 N -0.241 5.241 4 C 0.082 3.918 5 H 0.007 0.993 6 C -0.215 4.215 7 C -0.619 4.619 8 H 0.092 0.908 9 C -0.178 4.178 10 N -0.547 5.547 11 Si 0.869 3.131 12 H -0.213 1.213 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.034 4.034 16 C -0.191 4.191 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.147 4.147 21 H 0.107 0.893 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.646 -5.483 5.992 14.198 hybrid contribution 0.345 -0.976 1.014 1.449 sum 11.991 -6.459 7.006 15.316 Atomic orbital electron populations 1.22023 0.95273 0.98570 1.04742 1.21876 0.96409 0.89664 0.98245 1.62310 1.17018 1.16809 1.27925 1.19603 0.97238 0.90682 0.84232 0.99279 1.22505 0.96464 1.00360 1.02133 1.22169 0.92442 1.45647 1.01643 0.90774 1.25624 0.99607 0.92521 1.00096 1.70853 1.09852 1.36997 1.36954 0.84177 0.75832 0.76641 0.76399 1.21325 1.21373 1.19962 1.21867 0.89162 0.98986 0.93347 1.22273 0.95450 1.00792 1.00536 1.21479 0.97012 1.01162 0.95623 1.21524 0.99118 0.99304 0.95521 1.21522 0.95851 0.99452 0.98692 1.21588 0.95454 1.01559 0.96144 0.89320 0.95149 0.93076 0.95975 0.93007 0.92226 0.92980 0.95801 0.92308 0.89722 0.92195 0.92061 0.92217 0.92730 0.92633 0.92380 0.92169 0.92455 0.91561 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.73 37.16 0.32 -2.67 16 2 C 0.07 1.28 4.25 -3.82 -0.02 1.27 16 3 N -0.52 -10.78 4.31 -220.10 -0.95 -11.73 16 4 C 0.19 4.49 1.13 -68.87 -0.08 4.42 16 5 H -0.01 -0.25 6.04 -51.93 -0.31 -0.56 16 6 C -0.16 -3.49 7.56 37.16 0.28 -3.21 16 7 C -0.58 -15.96 7.03 -34.44 -0.24 -16.20 16 8 H 0.07 2.19 6.12 -52.49 -0.32 1.86 16 9 C 0.03 0.74 5.29 -17.82 -0.09 0.64 16 10 N -0.91 -27.89 13.70 55.43 0.76 -27.13 16 11 Si 1.04 25.29 26.25 -169.99 -4.46 20.83 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.13 5.52 56.52 0.31 -5.82 16 15 C 0.08 1.30 1.67 -67.71 -0.11 1.19 16 16 C -0.15 -2.38 4.36 -26.73 -0.12 -2.50 16 17 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 18 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 20 C -0.11 -1.62 5.20 -26.73 -0.14 -1.76 16 21 H 0.09 2.08 5.56 -51.93 -0.29 1.79 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 24 H 0.02 0.44 7.11 -51.93 -0.37 0.07 16 25 H 0.05 0.89 5.85 -51.93 -0.30 0.59 16 26 H 0.06 1.39 4.32 -51.93 -0.22 1.16 16 27 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 28 H 0.02 0.46 6.18 -51.93 -0.32 0.14 16 29 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 30 H 0.08 1.53 5.59 -51.93 -0.29 1.24 16 31 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 32 H 0.06 1.06 6.86 -51.93 -0.36 0.71 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.86 6.30 -51.93 -0.33 0.53 16 LS Contribution 283.64 15.07 4.27 4.27 Total: -1.00 -28.71 283.64 -7.97 -36.69 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.93 Total: 0.61 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -0.67 Total: -23.54 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.19 Total: -38.85 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.46 Total: 20.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.71 -7.97 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.492 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds