Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47228 * 2 1 4 4 C 1.46896 * 111.00138 * 283.00080 * 3 2 1 5 5 H 1.09007 * 109.46992 * 315.80613 * 4 3 2 6 6 C 1.53004 * 109.47166 * 195.80961 * 4 3 2 7 7 C 1.50694 * 109.47425 * 75.80615 * 4 3 2 8 8 H 1.07997 * 120.00246 * 2.26692 * 7 4 3 9 9 C 1.37878 * 120.00244 * 182.26509 * 7 4 3 10 10 N 1.31513 * 120.00487 * 196.88001 * 9 7 4 11 11 Si 1.86807 * 119.99788 * 16.87539 * 9 7 4 12 12 H 1.48502 * 109.46728 * 180.02562 * 11 9 7 13 13 H 1.48496 * 109.46860 * 60.00182 * 11 9 7 14 14 H 1.48501 * 109.47105 * 300.00024 * 11 9 7 15 15 C 1.46898 * 111.00108 * 159.04417 * 3 2 1 16 16 C 1.52997 * 109.47212 * 52.75487 * 15 3 2 17 17 C 1.52997 * 109.47063 * 179.97438 * 16 15 3 18 18 C 1.53007 * 109.47155 * 60.00443 * 17 16 15 19 19 C 1.53003 * 109.46781 * 300.00064 * 18 17 16 20 20 C 1.52997 * 109.47328 * 60.00042 * 19 18 17 21 21 H 1.08993 * 109.47058 * 68.12282 * 1 2 3 22 22 H 1.09000 * 109.46748 * 188.12374 * 1 2 3 23 23 H 1.09000 * 109.46801 * 308.11743 * 1 2 3 24 24 H 1.09005 * 109.46986 * 239.99928 * 2 1 3 25 25 H 1.08997 * 109.47124 * 120.00264 * 2 1 3 26 26 H 1.08999 * 109.47095 * 187.35543 * 6 4 3 27 27 H 1.09003 * 109.46765 * 307.35367 * 6 4 3 28 28 H 1.09000 * 109.47180 * 67.35139 * 6 4 3 29 29 H 0.97010 * 119.99575 * 354.93276 * 10 9 7 30 30 H 1.09002 * 109.47291 * 172.76258 * 15 3 2 31 31 H 1.08995 * 109.47303 * 300.00456 * 16 15 3 32 32 H 1.09004 * 109.46866 * 60.00181 * 16 15 3 33 33 H 1.08995 * 109.47482 * 300.00406 * 17 16 15 34 34 H 1.09004 * 109.47022 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47045 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.46705 * 59.99877 * 18 17 16 37 37 H 1.09000 * 109.46626 * 299.99310 * 19 18 17 38 38 H 1.09004 * 109.46874 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.47022 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47482 * 59.99765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.9044 1.9841 -1.3362 5 1 2.2486 1.2709 -2.0852 6 6 2.7628 3.2489 -1.4039 7 6 0.4647 2.3392 -1.6050 8 1 -0.2835 2.1735 -0.8440 9 6 0.1027 2.8756 -2.8225 10 7 -1.0541 3.4874 -2.9537 11 14 1.2553 2.7335 -4.2856 12 1 0.6377 3.3869 -5.4675 13 1 1.5017 1.2999 -4.5842 14 1 2.5431 3.4014 -3.9680 15 6 3.4027 1.4544 0.4905 16 6 4.2738 0.4758 -0.2997 17 6 5.7143 0.5486 0.2108 18 6 5.7488 0.1782 1.6949 19 6 4.8776 1.1568 2.4851 20 6 3.4371 1.0840 1.9747 21 1 -0.3633 0.3829 -0.9536 22 1 -0.3633 -1.0174 0.1452 23 1 -0.3633 0.6344 0.8085 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.5772 3.7640 -2.3464 27 1 2.5064 3.9068 -0.5735 28 1 3.8164 2.9768 -1.3399 29 1 -1.6838 3.4975 -2.2158 30 1 3.7840 2.4672 0.3602 31 1 3.8925 -0.5369 -0.1694 32 1 4.2496 0.7399 -1.3569 33 1 6.0953 1.5613 0.0801 34 1 6.3348 -0.1490 -0.3519 35 1 6.7751 0.2296 2.0585 36 1 5.3677 -0.8346 1.8256 37 1 5.2587 2.1696 2.3544 38 1 4.9018 0.8927 3.5424 39 1 2.8166 1.7815 2.5373 40 1 3.0560 0.0712 2.1053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -29.042391 kcal Electronic energy + Delta-G solvation = -17072.495397 eV Core-core repulsion = 14692.811391 eV Total energy + Delta-G solvation = -2379.684006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66410 -37.39103 -34.74821 -32.83745 -31.63515 -31.35981 -28.26489 -26.63652 -23.81310 -23.50985 -22.91417 -21.07361 -19.69224 -19.44405 -16.84386 -16.69929 -15.93259 -15.52496 -15.31745 -15.13378 -14.87784 -14.48612 -14.18322 -13.66200 -13.49356 -13.02844 -12.99042 -12.92216 -12.55263 -12.54682 -12.35187 -12.07434 -12.00534 -11.77442 -11.58466 -11.45788 -11.14599 -11.10523 -10.91267 -10.64426 -10.31194 -8.88568 -8.59470 -6.19273 1.43136 1.49921 1.68558 2.50835 3.12807 3.25855 3.81769 3.92958 4.10545 4.25429 4.32245 4.38381 4.49214 4.56839 4.58247 4.64447 4.70717 4.72703 4.75745 4.82740 4.85434 4.91579 5.01231 5.06260 5.17659 5.23630 5.26968 5.27930 5.31961 5.38052 5.48958 5.54003 5.59958 5.64518 6.02743 6.17221 6.43086 6.71581 6.88494 7.54355 8.75540 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.009079 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.958732 B = 3083.277728 C = 3456.361426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 N -0.536 5.536 4 C 0.193 3.807 5 H -0.015 1.015 6 C -0.149 4.149 7 C -0.572 4.572 8 H 0.041 0.959 9 C -0.026 4.026 10 N -0.947 5.947 11 Si 1.075 2.925 12 H -0.293 1.293 13 H -0.274 1.274 14 H -0.240 1.240 15 C 0.073 3.927 16 C -0.147 4.147 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.105 4.105 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.018 0.982 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.250 0.750 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.877 -7.420 8.112 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 N -0.259 5.259 4 C 0.085 3.915 5 H 0.002 0.998 6 C -0.207 4.207 7 C -0.611 4.611 8 H 0.059 0.941 9 C -0.223 4.223 10 N -0.584 5.584 11 Si 0.898 3.102 12 H -0.219 1.219 13 H -0.199 1.199 14 H -0.165 1.165 15 C -0.035 4.035 16 C -0.186 4.186 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.143 4.143 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.754 -6.694 6.864 17.596 hybrid contribution -0.672 -0.654 0.869 1.278 sum 14.082 -7.348 7.733 17.666 Atomic orbital electron populations 1.21890 0.96307 0.99820 1.01835 1.21891 0.95458 0.89215 0.99325 1.62194 1.19994 1.17669 1.26066 1.19405 0.94722 0.91480 0.85880 0.99757 1.22366 0.98038 0.99117 1.01165 1.22376 0.94181 1.43976 1.00540 0.94052 1.26917 1.00178 0.92147 1.03093 1.70988 1.11015 1.40018 1.36427 0.83748 0.75576 0.77650 0.73223 1.21927 1.19936 1.16498 1.21957 0.87231 0.99201 0.95124 1.22198 0.97248 1.00016 0.99155 1.21471 0.94871 1.01815 0.96782 1.21517 1.00250 0.99089 0.94243 1.21503 0.93771 0.99971 0.99798 1.21545 0.97493 1.01133 0.94091 0.93403 0.92144 0.94305 0.96369 0.90193 0.93280 0.93811 0.92700 0.94126 0.90570 0.92181 0.93921 0.92039 0.91322 0.90429 0.92033 0.92024 0.90618 0.92838 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 8.73 71.98 0.63 -5.08 16 2 C 0.07 2.60 4.25 86.31 0.37 2.96 16 3 N -0.54 -21.93 4.31 -850.25 -3.66 -25.59 16 4 C 0.19 9.08 1.13 44.17 0.05 9.13 16 5 H -0.01 -0.72 6.04 -2.38 -0.01 -0.73 16 6 C -0.15 -6.44 7.56 71.98 0.54 -5.90 16 7 C -0.57 -32.31 7.03 25.60 0.18 -32.13 16 8 H 0.04 2.56 6.12 -2.91 -0.02 2.54 16 9 C -0.03 -1.54 5.29 84.66 0.45 -1.09 16 10 N -0.95 -60.17 13.70 21.45 0.29 -59.88 16 11 Si 1.07 50.84 26.25 68.60 1.80 52.64 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.24 -10.06 5.52 99.48 0.55 -9.51 16 15 C 0.07 2.38 1.67 44.92 0.07 2.45 16 16 C -0.15 -4.23 4.36 30.59 0.13 -4.10 16 17 C -0.11 -2.43 5.92 30.60 0.18 -2.25 16 18 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 19 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 20 C -0.10 -2.84 5.20 30.60 0.16 -2.68 16 21 H 0.05 2.32 5.56 -2.39 -0.01 2.31 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 24 H 0.02 0.70 7.11 -2.38 -0.02 0.68 16 25 H 0.08 2.56 5.85 -2.39 -0.01 2.54 16 26 H 0.05 2.20 4.32 -2.39 -0.01 2.19 16 27 H 0.04 1.92 8.04 -2.39 -0.02 1.90 16 28 H 0.05 2.01 6.18 -2.39 -0.01 1.99 16 29 H 0.25 16.17 8.73 -92.70 -0.81 15.36 16 30 H 0.08 2.60 5.59 -2.39 -0.01 2.58 16 31 H 0.06 1.72 6.73 -2.39 -0.02 1.70 16 32 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 40 H 0.06 1.60 6.30 -2.39 -0.02 1.58 16 Total: -1.00 -63.76 283.64 2.36 -61.40 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.80 Total: 14.17 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 3.13 Total: -42.74 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -3.37 Total: -85.47 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 1.80 Total: 52.64 kcal Total: -63.76 2.36 -61.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.358 kcal (2) G-P(sol) polarization free energy of solvation -63.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds