Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 C 1.50705 * 109.47521 * 119.99925 * 2 1 3 5 5 H 1.07997 * 119.99940 * 119.99706 * 4 2 1 6 6 C 1.37874 * 119.99553 * 300.00521 * 4 2 1 7 7 N 1.31512 * 120.00562 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99753 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47132 * 89.99539 * 8 6 4 10 10 H 1.48495 * 109.47372 * 209.99935 * 8 6 4 11 11 H 1.48505 * 109.46782 * 329.99656 * 8 6 4 12 12 N 1.46903 * 109.47147 * 240.00234 * 2 1 3 13 13 C 1.46902 * 111.00315 * 85.00088 * 12 2 1 14 14 H 1.09002 * 109.46719 * 324.99847 * 13 12 2 15 15 C 1.52992 * 109.47181 * 84.99613 * 13 12 2 16 16 C 1.52997 * 109.47094 * 205.00073 * 13 12 2 17 17 C 1.53000 * 109.47060 * 59.99827 * 16 13 12 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 13 19 19 C 1.53002 * 109.46963 * 299.99499 * 18 17 16 20 20 C 1.52997 * 109.47092 * 60.00194 * 19 18 17 21 21 C 1.53002 * 109.46817 * 179.97438 * 16 13 12 22 22 H 1.09004 * 109.46588 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46789 * 299.99533 * 1 2 3 24 24 H 1.09000 * 109.47197 * 59.99962 * 1 2 3 25 25 H 0.97002 * 120.00324 * 180.02562 * 7 6 4 26 26 H 1.00896 * 110.99890 * 321.04005 * 12 2 1 27 27 H 1.08996 * 109.47747 * 300.00057 * 15 13 12 28 28 H 1.09002 * 109.47103 * 60.00469 * 15 13 12 29 29 H 1.09001 * 109.47066 * 180.02562 * 15 13 12 30 30 H 1.09002 * 109.47153 * 299.99508 * 16 13 12 31 31 H 1.09001 * 109.47194 * 299.99650 * 17 16 13 32 32 H 1.08992 * 109.47399 * 59.99823 * 17 16 13 33 33 H 1.09000 * 109.47437 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47508 * 59.99571 * 18 17 16 35 35 H 1.09002 * 109.47067 * 300.00341 * 19 18 17 36 36 H 1.09000 * 109.47312 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47375 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47497 * 59.99850 * 20 19 18 39 39 H 1.09002 * 109.47075 * 299.99262 * 21 16 13 40 40 H 1.08996 * 109.47407 * 60.00219 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3433 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3470 14 1 1.2576 0.9329 -2.2907 15 6 3.4111 0.9809 -2.3224 16 6 1.9771 -0.5797 -3.6454 17 6 0.6484 -1.3379 -3.6699 18 6 0.5433 -2.1407 -4.9682 19 6 0.6089 -1.1880 -6.1636 20 6 1.9374 -0.4297 -6.1391 21 6 2.0419 0.3736 -4.8405 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7094 1.1617 3.4844 26 1 1.4496 -1.4979 -1.4100 27 1 3.4862 1.5525 -1.3974 28 1 4.2359 0.2706 -2.3786 29 1 3.4575 1.6603 -3.1735 30 1 2.8019 -1.2900 -3.7017 31 1 0.6018 -2.0170 -2.8185 32 1 -0.1764 -0.6277 -3.6137 33 1 -0.4034 -2.6806 -4.9859 34 1 1.3682 -2.8511 -5.0240 35 1 -0.2160 -0.4777 -6.1078 36 1 0.5335 -1.7599 -7.0885 37 1 1.9840 0.2494 -6.9905 38 1 2.7624 -1.1400 -6.1949 39 1 1.2167 1.0835 -4.7841 40 1 2.9882 0.9141 -4.8232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052337613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -51.436041 kcal Electronic energy + Delta-G solvation = -16425.669768 eV Core-core repulsion = 14045.014700 eV Total energy + Delta-G solvation = -2380.655068 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19081 -37.55478 -35.04657 -32.88617 -31.64630 -29.91240 -28.62956 -27.23484 -24.33393 -23.27265 -22.07489 -21.00127 -20.59669 -18.38102 -16.92523 -16.65597 -16.15443 -15.23440 -15.17208 -14.78329 -14.57889 -14.32974 -14.04199 -13.74693 -13.36763 -13.26828 -12.98570 -12.84162 -12.57899 -12.45937 -12.35954 -12.17746 -12.10151 -11.94569 -11.79525 -11.61230 -11.24083 -11.09076 -10.72884 -10.72382 -10.47198 -8.90266 -8.08782 -6.19983 1.42728 1.43035 1.54179 2.44408 3.19222 3.60229 3.79390 3.88848 3.92592 4.29219 4.37142 4.47457 4.54273 4.59009 4.68312 4.71307 4.74979 4.78428 4.85570 4.90516 4.94054 5.00553 5.08307 5.20910 5.23829 5.29693 5.33000 5.35813 5.37493 5.45624 5.50523 5.57518 5.66034 5.69981 5.86519 6.30560 6.71187 6.90199 6.99271 7.50376 8.96842 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047077 B = 0.006046 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.633183 B = 4630.078394 C = 4792.961166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.685 5.685 13 C 0.086 3.914 14 H 0.015 0.985 15 C -0.131 4.131 16 C -0.075 4.075 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.111 4.111 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.020 0.980 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -2.944 -16.499 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.109 3.891 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.317 5.317 13 C -0.024 4.024 14 H 0.033 0.967 15 C -0.189 4.189 16 C -0.094 4.094 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.149 4.149 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.812 -2.758 -16.197 16.451 hybrid contribution -0.850 0.035 1.179 1.454 sum -0.038 -2.722 -15.018 15.263 Atomic orbital electron populations 1.22218 1.00333 0.98973 0.99742 1.18904 0.89682 0.92633 0.87837 0.98313 1.21474 1.30228 1.12375 0.91171 0.92857 1.25736 0.95487 0.95916 1.01929 1.70017 1.38166 1.24375 1.23907 0.85513 0.77912 0.79060 0.78841 1.20372 1.20867 1.19334 1.60784 1.57844 1.09564 1.03522 1.21538 0.96282 0.93914 0.90653 0.96679 1.21770 0.97245 0.99539 1.00306 1.21204 0.97902 0.97189 0.93133 1.21608 0.96905 0.98797 0.98258 1.21489 1.01983 0.97804 0.93771 1.21541 0.97673 0.98296 0.97990 1.21524 0.97791 0.99052 0.96803 1.21615 1.01959 0.97502 0.93865 0.95105 0.92103 0.96055 0.93064 0.85026 0.95679 0.92494 0.90676 0.90979 0.93089 0.93241 0.91644 0.91698 0.92455 0.90759 0.90874 0.91703 0.92715 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.92 71.98 0.64 -7.02 16 2 C 0.22 11.44 2.38 44.17 0.11 11.55 16 3 H 0.00 -0.06 7.11 -2.39 -0.02 -0.08 16 4 C -0.51 -29.42 8.84 25.60 0.23 -29.19 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.40 5.30 84.65 0.45 0.85 16 7 N -0.92 -54.62 11.32 21.45 0.24 -54.37 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.69 -29.85 6.04 -473.31 -2.86 -32.71 16 13 C 0.09 3.12 2.04 44.91 0.09 3.21 16 14 H 0.02 0.60 7.11 -2.39 -0.02 0.59 16 15 C -0.13 -4.53 9.05 71.98 0.65 -3.87 16 16 C -0.08 -2.11 1.91 -10.79 -0.02 -2.13 16 17 C -0.12 -3.16 4.97 30.59 0.15 -3.01 16 18 C -0.11 -2.35 5.92 30.60 0.18 -2.17 16 19 C -0.12 -2.11 5.92 30.59 0.18 -1.93 16 20 C -0.11 -2.07 5.93 30.61 0.18 -1.89 16 21 C -0.11 -2.53 4.85 30.61 0.15 -2.38 16 22 H 0.03 1.46 8.13 -2.38 -0.02 1.44 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 24 H 0.02 0.94 7.43 -2.39 -0.02 0.93 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.33 13.65 5.91 -89.70 -0.53 13.12 16 27 H 0.02 0.99 7.43 -2.39 -0.02 0.97 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.10 6.43 -2.39 -0.02 2.08 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.51 6.21 -2.39 -0.01 1.50 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.52 6.43 -2.39 -0.02 1.50 16 Total: -1.00 -60.93 300.06 2.85 -58.08 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.45 Total: 20.02 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 2.99 Total: -37.99 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.62 Total: -87.09 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -60.93 2.85 -58.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052337613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.641 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds