Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46923 * 2 1 4 4 C 1.50700 * 109.47250 * 240.00246 * 2 1 3 5 5 H 1.07993 * 119.99929 * 245.32078 * 4 2 1 6 6 C 1.37883 * 119.99944 * 65.31748 * 4 2 1 7 7 N 1.31514 * 120.00142 * 9.15819 * 6 4 2 8 8 Si 1.86797 * 119.99905 * 189.16096 * 6 4 2 9 9 H 1.48500 * 109.47216 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47065 * 299.99736 * 8 6 4 11 11 H 1.48499 * 109.47529 * 59.99826 * 8 6 4 12 12 N 1.46898 * 109.47202 * 120.00039 * 2 1 3 13 13 C 1.46901 * 111.00225 * 274.59299 * 12 2 1 14 14 H 1.08996 * 109.46700 * 341.32282 * 13 12 2 15 15 C 1.53004 * 109.46725 * 101.31863 * 13 12 2 16 16 C 1.52993 * 109.47260 * 221.32146 * 13 12 2 17 17 C 1.53003 * 109.47180 * 300.00092 * 16 13 12 18 18 C 1.52998 * 109.47206 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47586 * 59.99936 * 18 17 16 20 20 C 1.53003 * 109.46900 * 300.00251 * 19 18 17 21 21 C 1.52997 * 109.47318 * 180.02562 * 16 13 12 22 22 H 1.08995 * 109.47157 * 179.35440 * 1 2 3 23 23 H 1.08997 * 109.47464 * 299.35403 * 1 2 3 24 24 H 1.09003 * 109.47089 * 59.35104 * 1 2 3 25 25 H 0.97008 * 119.99580 * 356.26120 * 7 6 4 26 26 H 1.00893 * 110.99771 * 38.55087 * 12 2 1 27 27 H 1.09001 * 109.46839 * 63.69644 * 15 13 12 28 28 H 1.09003 * 109.46592 * 183.69261 * 15 13 12 29 29 H 1.08996 * 109.47167 * 303.69201 * 15 13 12 30 30 H 1.08991 * 109.47616 * 59.99812 * 16 13 12 31 31 H 1.09005 * 109.46799 * 300.00186 * 17 16 13 32 32 H 1.08999 * 109.47269 * 59.99712 * 17 16 13 33 33 H 1.08997 * 109.46939 * 299.99348 * 18 17 16 34 34 H 1.09007 * 109.46963 * 180.02562 * 18 17 16 35 35 H 1.08994 * 109.47620 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.47129 * 59.99724 * 19 18 17 37 37 H 1.09005 * 109.46799 * 299.99674 * 20 19 18 38 38 H 1.08995 * 109.47029 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47099 * 300.00392 * 21 16 13 40 40 H 1.09005 * 109.47129 * 59.99528 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5805 -1.6358 -1.1337 6 6 1.7920 -0.1787 -2.4798 7 7 1.2867 1.0301 -2.5940 8 14 2.1841 -1.1756 -4.0102 9 1 1.8371 -0.3849 -5.2183 10 1 3.6329 -1.5009 -4.0313 11 1 1.3945 -2.4332 -3.9975 12 7 2.0196 -0.6925 1.1994 13 6 2.0916 0.2249 2.3445 14 1 2.0894 1.2542 1.9860 15 6 0.8830 -0.0006 3.2553 16 6 3.3781 -0.0391 3.1294 17 6 3.3812 -1.4840 3.6325 18 6 4.6674 -1.7478 4.4179 19 6 4.7418 -0.7924 5.6106 20 6 4.7387 0.6526 5.1075 21 6 3.4527 0.9159 4.3224 22 1 -0.3633 -1.0275 -0.0116 23 1 -0.3634 0.5037 0.8957 24 1 -0.3633 0.5239 -0.8841 25 1 1.0326 1.5265 -1.8003 26 1 1.4456 -1.4941 1.4137 27 1 0.9208 -1.0097 3.6658 28 1 0.9016 0.7238 4.0695 29 1 -0.0340 0.1234 2.6794 30 1 4.2390 0.1215 2.4806 31 1 2.5202 -1.6446 4.2814 32 1 3.3278 -2.1647 2.7829 33 1 5.5286 -1.5871 3.7694 34 1 4.6698 -2.7774 4.7760 35 1 5.6579 -0.9806 6.1704 36 1 3.8806 -0.9531 6.2592 37 1 5.5999 0.8133 4.4589 38 1 4.7912 1.3332 5.9572 39 1 3.4502 1.9455 3.9643 40 1 2.5917 0.7549 4.9711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052337615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -37.599495 kcal Electronic energy + Delta-G solvation = -16449.959186 eV Core-core repulsion = 14069.904116 eV Total energy + Delta-G solvation = -2380.055070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.00495 -36.25638 -33.51174 -31.04892 -30.52440 -28.31216 -27.12831 -24.65900 -23.35151 -22.39586 -20.56058 -20.30911 -18.69280 -16.83870 -15.21866 -14.80241 -14.46511 -14.05384 -13.97118 -13.71495 -13.46871 -12.78794 -12.76996 -12.07908 -11.91288 -11.79734 -11.73987 -11.54747 -11.17330 -10.94181 -10.79320 -10.57027 -10.54504 -10.53327 -10.07234 -10.06111 -10.00262 -9.73166 -9.65910 -8.56843 -8.15327 -7.23946 -6.26954 -3.95116 3.48721 3.50355 3.69089 4.57722 4.83423 4.89908 4.96426 5.17775 5.33629 5.43539 5.51548 5.56866 5.65800 5.71155 5.77182 5.78540 5.81548 5.86596 5.98136 6.14708 6.20451 6.25478 6.31239 6.33941 6.41007 6.46135 6.51670 6.62537 6.65957 6.78695 6.84072 6.89281 7.11469 7.40144 8.02670 8.34637 8.54988 8.71887 8.98489 9.74344 11.09920 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038372 B = 0.006338 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.514271 B = 4416.746089 C = 4713.542102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.201 3.799 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 1.069 2.931 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.289 1.289 12 N -0.670 5.670 13 C 0.087 3.913 14 H 0.062 0.938 15 C -0.180 4.180 16 C -0.070 4.070 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.117 4.117 22 H 0.038 0.962 23 H 0.018 0.982 24 H 0.058 0.942 25 H 0.268 0.732 26 H 0.326 0.674 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.241 -2.432 14.643 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.092 3.908 3 H 0.042 0.958 4 C -0.616 4.616 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.555 5.555 8 Si 0.898 3.102 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.216 1.216 12 N -0.298 5.298 13 C -0.024 4.024 14 H 0.080 0.920 15 C -0.239 4.239 16 C -0.090 4.090 17 C -0.147 4.147 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.155 4.155 22 H 0.057 0.943 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.919 -2.294 12.791 13.573 hybrid contribution -1.062 0.094 1.923 2.199 sum 2.857 -2.201 14.714 15.149 Atomic orbital electron populations 1.22644 1.01598 0.99806 0.99313 1.19382 0.88716 0.94298 0.88378 0.95786 1.21928 1.37878 1.10674 0.91088 0.92683 1.25760 0.95201 0.96575 1.01269 1.70818 1.41506 1.09757 1.33375 0.83542 0.76199 0.74974 0.75523 1.21016 1.21548 1.21601 1.60698 1.57407 1.08771 1.02956 1.21576 0.92802 0.96903 0.91156 0.92010 1.22656 0.99392 1.01510 1.00318 1.21108 0.98619 0.94273 0.94953 1.21536 0.96361 0.97347 0.99433 1.21546 0.99012 0.98241 0.96905 1.21521 1.00937 0.95311 0.97704 1.21505 0.98472 0.96228 0.99301 1.21650 0.97314 0.99265 0.97271 0.94293 0.96331 0.92299 0.92108 0.85650 0.92488 0.92958 0.92785 0.91028 0.92771 0.90850 0.92162 0.92720 0.92765 0.92466 0.92149 0.92708 0.92497 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.70 37.16 0.32 -3.74 16 2 C 0.20 5.02 2.16 -68.87 -0.15 4.87 16 3 H 0.02 0.67 6.72 -51.93 -0.35 0.32 16 4 C -0.58 -16.32 8.77 -34.44 -0.30 -16.62 16 5 H 0.05 1.59 7.83 -52.49 -0.41 1.18 16 6 C 0.02 0.43 5.21 -17.82 -0.09 0.34 16 7 N -0.92 -27.70 13.10 55.43 0.73 -26.97 16 8 Si 1.07 25.57 29.91 -169.99 -5.08 20.49 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 N -0.67 -14.05 5.31 -100.96 -0.54 -14.58 16 13 C 0.09 1.52 2.41 -67.71 -0.16 1.36 16 14 H 0.06 1.20 7.19 -51.93 -0.37 0.83 16 15 C -0.18 -2.71 8.32 37.16 0.31 -2.40 16 16 C -0.07 -1.08 2.21 -90.62 -0.20 -1.28 16 17 C -0.11 -1.54 4.70 -26.73 -0.13 -1.66 16 18 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 19 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 20 C -0.12 -1.34 5.92 -26.75 -0.16 -1.50 16 21 C -0.12 -1.51 4.84 -26.76 -0.13 -1.64 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.02 0.37 6.08 -51.93 -0.32 0.06 16 24 H 0.06 1.50 6.37 -51.93 -0.33 1.17 16 25 H 0.27 8.03 5.94 -40.82 -0.24 7.79 16 26 H 0.33 6.57 7.98 -39.30 -0.31 6.25 16 27 H 0.06 0.80 6.24 -51.93 -0.32 0.48 16 28 H 0.05 0.70 6.63 -51.93 -0.34 0.36 16 29 H 0.05 0.87 6.03 -51.93 -0.31 0.55 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.72 6.35 -51.93 -0.33 0.39 16 32 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.74 6.51 -51.93 -0.34 0.41 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -29.05 295.49 -8.43 -37.48 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.98 Total: 4.47 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -1.01 Total: -25.33 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.19 Total: -41.56 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.05 -8.43 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052337615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.124 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds