Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46923 * 2 1 4 4 C 1.50700 * 109.47250 * 240.00246 * 2 1 3 5 5 H 1.07993 * 119.99929 * 245.32078 * 4 2 1 6 6 C 1.37883 * 119.99944 * 65.31748 * 4 2 1 7 7 N 1.31514 * 120.00142 * 9.15819 * 6 4 2 8 8 Si 1.86797 * 119.99905 * 189.16096 * 6 4 2 9 9 H 1.48500 * 109.47216 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47065 * 299.99736 * 8 6 4 11 11 H 1.48499 * 109.47529 * 59.99826 * 8 6 4 12 12 N 1.46898 * 109.47202 * 120.00039 * 2 1 3 13 13 C 1.46901 * 111.00225 * 274.59299 * 12 2 1 14 14 H 1.08996 * 109.46700 * 341.32282 * 13 12 2 15 15 C 1.53004 * 109.46725 * 101.31863 * 13 12 2 16 16 C 1.52993 * 109.47260 * 221.32146 * 13 12 2 17 17 C 1.53003 * 109.47180 * 300.00092 * 16 13 12 18 18 C 1.52998 * 109.47206 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47586 * 59.99936 * 18 17 16 20 20 C 1.53003 * 109.46900 * 300.00251 * 19 18 17 21 21 C 1.52997 * 109.47318 * 180.02562 * 16 13 12 22 22 H 1.08995 * 109.47157 * 179.35440 * 1 2 3 23 23 H 1.08997 * 109.47464 * 299.35403 * 1 2 3 24 24 H 1.09003 * 109.47089 * 59.35104 * 1 2 3 25 25 H 0.97008 * 119.99580 * 356.26120 * 7 6 4 26 26 H 1.00893 * 110.99771 * 38.55087 * 12 2 1 27 27 H 1.09001 * 109.46839 * 63.69644 * 15 13 12 28 28 H 1.09003 * 109.46592 * 183.69261 * 15 13 12 29 29 H 1.08996 * 109.47167 * 303.69201 * 15 13 12 30 30 H 1.08991 * 109.47616 * 59.99812 * 16 13 12 31 31 H 1.09005 * 109.46799 * 300.00186 * 17 16 13 32 32 H 1.08999 * 109.47269 * 59.99712 * 17 16 13 33 33 H 1.08997 * 109.46939 * 299.99348 * 18 17 16 34 34 H 1.09007 * 109.46963 * 180.02562 * 18 17 16 35 35 H 1.08994 * 109.47620 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.47129 * 59.99724 * 19 18 17 37 37 H 1.09005 * 109.46799 * 299.99674 * 20 19 18 38 38 H 1.08995 * 109.47029 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.47099 * 300.00392 * 21 16 13 40 40 H 1.09005 * 109.47129 * 59.99528 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5805 -1.6358 -1.1337 6 6 1.7920 -0.1787 -2.4798 7 7 1.2867 1.0301 -2.5940 8 14 2.1841 -1.1756 -4.0102 9 1 1.8371 -0.3849 -5.2183 10 1 3.6329 -1.5009 -4.0313 11 1 1.3945 -2.4332 -3.9975 12 7 2.0196 -0.6925 1.1994 13 6 2.0916 0.2249 2.3445 14 1 2.0894 1.2542 1.9860 15 6 0.8830 -0.0006 3.2553 16 6 3.3781 -0.0391 3.1294 17 6 3.3812 -1.4840 3.6325 18 6 4.6674 -1.7478 4.4179 19 6 4.7418 -0.7924 5.6106 20 6 4.7387 0.6526 5.1075 21 6 3.4527 0.9159 4.3224 22 1 -0.3633 -1.0275 -0.0116 23 1 -0.3634 0.5037 0.8957 24 1 -0.3633 0.5239 -0.8841 25 1 1.0326 1.5265 -1.8003 26 1 1.4456 -1.4941 1.4137 27 1 0.9208 -1.0097 3.6658 28 1 0.9016 0.7238 4.0695 29 1 -0.0340 0.1234 2.6794 30 1 4.2390 0.1215 2.4806 31 1 2.5202 -1.6446 4.2814 32 1 3.3278 -2.1647 2.7829 33 1 5.5286 -1.5871 3.7694 34 1 4.6698 -2.7774 4.7760 35 1 5.6579 -0.9806 6.1704 36 1 3.8806 -0.9531 6.2592 37 1 5.5999 0.8133 4.4589 38 1 4.7912 1.3332 5.9572 39 1 3.4502 1.9455 3.9643 40 1 2.5917 0.7549 4.9711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052337615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -54.258664 kcal Electronic energy + Delta-G solvation = -16450.681582 eV Core-core repulsion = 14069.904116 eV Total energy + Delta-G solvation = -2380.777466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24788 -37.86087 -35.28474 -32.74145 -31.57541 -29.68964 -28.75479 -26.81698 -24.59637 -23.50073 -22.45955 -21.48442 -19.92891 -18.90149 -16.54093 -16.19796 -16.10337 -15.59587 -15.15712 -14.98925 -14.90216 -14.46490 -14.30235 -13.67018 -13.27779 -13.12267 -13.04103 -12.90363 -12.82580 -12.52747 -12.44170 -12.11904 -12.03835 -11.91351 -11.73434 -11.62046 -11.22431 -10.97344 -10.79253 -10.57698 -10.29687 -8.97005 -8.55631 -6.25711 1.54128 1.61891 1.81393 2.59141 3.21583 3.48163 3.81929 3.91483 4.02070 4.15769 4.33892 4.42082 4.48878 4.51497 4.57331 4.60426 4.66588 4.70773 4.76396 4.78277 4.83524 4.88880 5.04544 5.09867 5.16465 5.22453 5.24341 5.31490 5.36828 5.39813 5.47149 5.50349 5.63242 5.70144 6.00450 6.19418 6.55414 6.80757 6.84472 7.52397 8.80639 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038372 B = 0.006338 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.514271 B = 4416.746089 C = 4713.542102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.205 3.795 3 H -0.010 1.010 4 C -0.591 4.591 5 H 0.045 0.955 6 C -0.033 4.033 7 N -0.939 5.939 8 Si 1.115 2.885 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.271 1.271 12 N -0.675 5.675 13 C 0.084 3.916 14 H 0.035 0.965 15 C -0.170 4.170 16 C -0.065 4.065 17 C -0.105 4.105 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.112 4.112 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.256 0.744 26 H 0.333 0.667 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -3.496 16.501 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.095 3.905 3 H 0.008 0.992 4 C -0.630 4.630 5 H 0.064 0.936 6 C -0.231 4.231 7 N -0.578 5.578 8 Si 0.937 3.063 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.196 1.196 12 N -0.304 5.304 13 C -0.026 4.026 14 H 0.053 0.947 15 C -0.228 4.228 16 C -0.084 4.084 17 C -0.142 4.142 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.150 4.150 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.964 -3.363 14.686 15.579 hybrid contribution -1.046 0.449 1.395 1.800 sum 2.919 -2.913 16.081 16.602 Atomic orbital electron populations 1.22435 1.00115 1.00017 0.99247 1.19148 0.89689 0.92348 0.89283 0.99189 1.22275 1.37642 1.10380 0.92688 0.93640 1.27157 0.94559 0.96710 1.04639 1.70932 1.43214 1.10788 1.32847 0.82953 0.76978 0.74283 0.72070 1.21112 1.20175 1.19584 1.60588 1.57293 1.09383 1.03107 1.21641 0.95556 0.94670 0.90710 0.94652 1.22530 0.97080 1.03123 1.00104 1.21019 0.95891 0.96266 0.95265 1.21476 0.98170 0.95483 0.99070 1.21536 0.97291 0.99625 0.97142 1.21508 1.02306 0.94124 0.97116 1.21510 0.97008 0.97340 0.99548 1.21614 0.98983 0.98063 0.96376 0.93709 0.93810 0.94934 0.93328 0.84969 0.90934 0.90719 0.93822 0.94181 0.91317 0.93147 0.93383 0.91315 0.91158 0.91333 0.93100 0.90740 0.93129 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 8.70 71.98 0.63 -6.84 16 2 C 0.20 10.52 2.16 44.17 0.10 10.61 16 3 H -0.01 -0.56 6.72 -2.38 -0.02 -0.58 16 4 C -0.59 -34.10 8.77 25.60 0.22 -33.88 16 5 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 6 C -0.03 -1.93 5.21 84.66 0.44 -1.49 16 7 N -0.94 -58.08 13.10 21.45 0.28 -57.79 16 8 Si 1.11 51.53 29.91 68.60 2.05 53.58 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 N -0.67 -28.68 5.31 -473.32 -2.52 -31.20 16 13 C 0.08 2.97 2.41 44.91 0.11 3.07 16 14 H 0.04 1.42 7.19 -2.39 -0.02 1.40 16 15 C -0.17 -4.78 8.32 71.98 0.60 -4.18 16 16 C -0.07 -1.97 2.21 -10.80 -0.02 -2.00 16 17 C -0.10 -2.79 4.70 30.59 0.14 -2.65 16 18 C -0.12 -2.66 5.92 30.59 0.18 -2.47 16 19 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 20 C -0.12 -2.38 5.92 30.58 0.18 -2.20 16 21 C -0.11 -2.71 4.84 30.58 0.15 -2.56 16 22 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.79 6.08 -2.39 -0.01 1.78 16 24 H 0.03 1.68 6.37 -2.39 -0.02 1.66 16 25 H 0.26 16.00 5.94 -92.70 -0.55 15.45 16 26 H 0.33 13.28 7.98 -89.70 -0.72 12.56 16 27 H 0.07 1.82 6.24 -2.39 -0.01 1.81 16 28 H 0.07 1.78 6.63 -2.39 -0.02 1.76 16 29 H 0.04 1.32 6.03 -2.39 -0.01 1.30 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.63 6.35 -2.38 -0.02 1.62 16 32 H 0.05 1.57 7.60 -2.39 -0.02 1.55 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.60 6.51 -2.38 -0.02 1.59 16 Total: -1.00 -63.59 295.49 3.22 -60.36 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.50 Total: 21.55 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 2.91 Total: -46.51 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.23 Total: -88.99 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -63.59 3.22 -60.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052337615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.103 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds