Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47536 * 2 1 4 4 N 1.46903 * 109.47022 * 120.00397 * 2 1 3 5 5 C 1.46900 * 110.99688 * 228.16621 * 4 2 1 6 6 H 1.08999 * 109.47536 * 325.65512 * 5 4 2 7 7 C 1.52997 * 109.47301 * 85.65502 * 5 4 2 8 8 C 1.50697 * 109.47106 * 205.65681 * 5 4 2 9 9 H 1.08003 * 120.00010 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00235 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00046 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 120.00143 * 179.97438 * 10 8 5 13 13 H 1.48491 * 109.47036 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.46847 * 120.00348 * 12 10 8 15 15 H 1.48500 * 109.46924 * 240.00089 * 12 10 8 16 16 C 1.53006 * 109.47039 * 239.99951 * 2 1 3 17 17 C 1.52994 * 109.47181 * 182.46446 * 16 2 1 18 18 C 1.52997 * 109.47117 * 179.97438 * 17 16 2 19 19 C 1.52995 * 109.47061 * 60.00017 * 18 17 16 20 20 C 1.53002 * 109.47309 * 299.99897 * 19 18 17 21 21 C 1.52995 * 109.47141 * 62.46374 * 16 2 1 22 22 H 1.09009 * 109.47388 * 293.94943 * 1 2 3 23 23 H 1.08995 * 109.47715 * 173.94683 * 1 2 3 24 24 H 1.09003 * 109.47168 * 53.93908 * 1 2 3 25 25 H 1.00898 * 111.00265 * 104.21640 * 4 2 1 26 26 H 1.09004 * 109.47269 * 186.19882 * 7 5 4 27 27 H 1.09000 * 109.47542 * 306.19798 * 7 5 4 28 28 H 1.09007 * 109.46970 * 66.20200 * 7 5 4 29 29 H 0.96998 * 120.00262 * 179.97438 * 11 10 8 30 30 H 1.09000 * 109.46771 * 302.46567 * 16 2 1 31 31 H 1.08999 * 109.47116 * 300.00245 * 17 16 2 32 32 H 1.09005 * 109.47479 * 60.00056 * 17 16 2 33 33 H 1.08999 * 109.47440 * 300.00185 * 18 17 16 34 34 H 1.09003 * 109.47074 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47509 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.47131 * 60.00285 * 19 18 17 37 37 H 1.08997 * 109.46644 * 300.00036 * 20 19 18 38 38 H 1.08998 * 109.47291 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47212 * 300.00087 * 21 16 2 40 40 H 1.08999 * 109.46857 * 59.99938 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.0574 0.0966 1.8761 6 1 3.6486 0.6324 1.1335 7 6 2.3980 1.1005 2.8239 8 6 3.9544 -0.8233 2.6636 9 1 3.7721 -1.8878 2.6613 10 6 5.0086 -0.3061 3.3863 11 7 5.2311 0.9901 3.3888 12 14 6.1201 -1.4463 4.3631 13 1 5.6592 -2.8481 4.1977 14 1 7.5146 -1.3215 3.8684 15 1 6.0696 -1.0754 5.8001 16 6 2.0399 -0.7213 -1.2493 17 6 3.5686 -0.7752 -1.2187 18 6 4.0785 -1.4971 -2.4676 19 6 3.6198 -0.7415 -3.7164 20 6 2.0910 -0.6875 -3.7470 21 6 1.5812 0.0348 -2.4977 22 1 -0.3634 0.4172 0.9392 23 1 -0.3634 -1.0218 -0.1084 24 1 -0.3634 0.6049 -0.8308 25 1 2.3582 -1.6153 0.9713 26 1 3.1591 1.7590 3.2426 27 1 1.6672 1.6935 2.2740 28 1 1.8979 0.5642 3.6305 29 1 5.9724 1.3540 3.8975 30 1 1.6409 -1.7354 -1.2716 31 1 3.9676 0.2389 -1.1963 32 1 3.8955 -1.3140 -0.3292 33 1 3.6795 -2.5112 -2.4896 34 1 5.1676 -1.5359 -2.4456 35 1 3.9826 -1.2559 -4.6062 36 1 4.0188 0.2726 -3.6945 37 1 1.6921 -1.7016 -3.7689 38 1 1.7642 -0.1488 -4.6364 39 1 0.4920 0.0733 -2.5195 40 1 1.9802 1.0489 -2.4753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052337619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = -37.999026 kcal Electronic energy + Delta-G solvation = -16628.078856 eV Core-core repulsion = 14248.006461 eV Total energy + Delta-G solvation = -2380.072395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.93028 -35.81221 -33.27431 -31.11685 -30.33415 -28.62457 -27.09726 -25.05543 -22.84455 -22.10880 -20.33292 -19.64080 -19.26305 -16.41873 -15.44453 -14.84543 -14.26215 -13.96411 -13.92856 -13.54087 -13.19016 -12.81303 -12.53026 -12.18469 -11.95374 -11.55019 -11.36071 -11.08462 -11.06223 -10.90742 -10.84876 -10.66553 -10.47555 -10.27492 -10.09381 -10.05567 -9.93997 -9.62097 -9.53275 -8.72344 -8.44666 -7.12505 -5.99474 -4.04734 3.29785 3.37888 3.41951 4.42853 4.89077 4.97099 5.00229 5.29115 5.34414 5.42958 5.54181 5.64193 5.75974 5.77172 5.79460 5.84787 6.04105 6.12138 6.17528 6.20474 6.33659 6.37273 6.40933 6.47767 6.53056 6.60379 6.78736 6.82037 6.92896 6.96572 7.21779 7.32109 7.61037 7.83833 7.96710 8.30997 8.50206 8.77138 9.08422 9.61184 11.07244 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.007950 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.257214 B = 3520.997927 C = 4134.631125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.060 0.940 4 N -0.685 5.685 5 C 0.213 3.787 6 H 0.004 0.996 7 C -0.122 4.122 8 C -0.516 4.516 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.103 4.103 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.112 4.112 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.330 0.670 26 H 0.074 0.926 27 H 0.004 0.996 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 -2.257 -11.746 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.025 4.025 3 H 0.078 0.922 4 N -0.316 5.316 5 C 0.105 3.895 6 H 0.022 0.978 7 C -0.181 4.181 8 C -0.555 4.555 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.210 1.210 16 C -0.122 4.122 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.150 4.150 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.023 0.977 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.367 -1.885 -11.240 12.597 hybrid contribution 1.444 -0.633 0.012 1.576 sum -3.924 -2.518 -11.228 12.157 Atomic orbital electron populations 1.21826 0.96195 1.00635 1.00547 1.21592 0.94559 0.97601 0.88701 0.92172 1.60787 1.42148 1.05724 1.22907 1.19156 0.86667 0.91634 0.92023 0.97840 1.21711 0.98518 0.98941 0.98883 1.21323 1.11204 0.93507 1.29450 0.92357 1.24903 0.97450 0.95011 0.96552 1.69922 1.30068 1.10964 1.41921 0.86531 0.80393 0.81096 0.79924 1.19796 1.21173 1.21037 1.21755 0.95787 0.99481 0.95200 1.21633 0.94895 1.01139 0.97888 1.21516 1.00127 0.98975 0.94834 1.21536 0.95834 1.00556 0.97690 1.21530 0.95781 1.00443 0.97708 1.21607 1.00143 0.99164 0.94109 0.92609 0.93460 0.93834 0.85166 0.90722 0.97702 0.95065 0.93100 0.91633 0.92198 0.90541 0.92467 0.92387 0.92779 0.92245 0.92364 0.92700 0.92059 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.05 37.15 0.34 -1.77 16 2 C 0.09 1.55 2.09 -67.71 -0.14 1.40 16 3 H 0.06 1.19 7.31 -51.93 -0.38 0.81 16 4 N -0.68 -14.55 5.87 -100.96 -0.59 -15.15 16 5 C 0.21 5.34 1.74 -68.87 -0.12 5.22 16 6 H 0.00 0.11 7.03 -51.93 -0.36 -0.26 16 7 C -0.12 -3.09 9.13 37.16 0.34 -2.75 16 8 C -0.52 -14.11 8.59 -34.44 -0.30 -14.40 16 9 H 0.06 1.58 7.61 -52.48 -0.40 1.18 16 10 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 11 N -0.89 -25.54 11.39 55.43 0.63 -24.91 16 12 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C -0.10 -1.58 1.59 -90.62 -0.14 -1.72 16 17 C -0.12 -1.97 4.24 -26.74 -0.11 -2.08 16 18 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 19 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 20 C -0.12 -1.37 5.93 -26.71 -0.16 -1.52 16 21 C -0.11 -1.48 4.91 -26.71 -0.13 -1.61 16 22 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.59 6.81 -51.93 -0.35 0.24 16 25 H 0.33 6.94 6.69 -39.29 -0.26 6.67 16 26 H 0.07 2.04 6.26 -51.93 -0.33 1.72 16 27 H 0.00 0.09 7.92 -51.93 -0.41 -0.32 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 32 H 0.08 1.48 6.54 -51.93 -0.34 1.14 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.75 6.63 -51.93 -0.34 0.41 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -27.61 301.31 -8.67 -36.28 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.39 Total: 3.85 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.84 Total: -20.98 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.04 Total: -40.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.61 -8.67 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052337619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.723 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds