Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47536 * 2 1 4 4 N 1.46903 * 109.47022 * 120.00397 * 2 1 3 5 5 C 1.46900 * 110.99688 * 228.16621 * 4 2 1 6 6 H 1.08999 * 109.47536 * 325.65512 * 5 4 2 7 7 C 1.52997 * 109.47301 * 85.65502 * 5 4 2 8 8 C 1.50697 * 109.47106 * 205.65681 * 5 4 2 9 9 H 1.08003 * 120.00010 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00235 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00046 * 0.02562 * 10 8 5 12 12 Si 1.86805 * 120.00143 * 179.97438 * 10 8 5 13 13 H 1.48491 * 109.47036 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.46847 * 120.00348 * 12 10 8 15 15 H 1.48500 * 109.46924 * 240.00089 * 12 10 8 16 16 C 1.53006 * 109.47039 * 239.99951 * 2 1 3 17 17 C 1.52994 * 109.47181 * 182.46446 * 16 2 1 18 18 C 1.52997 * 109.47117 * 179.97438 * 17 16 2 19 19 C 1.52995 * 109.47061 * 60.00017 * 18 17 16 20 20 C 1.53002 * 109.47309 * 299.99897 * 19 18 17 21 21 C 1.52995 * 109.47141 * 62.46374 * 16 2 1 22 22 H 1.09009 * 109.47388 * 293.94943 * 1 2 3 23 23 H 1.08995 * 109.47715 * 173.94683 * 1 2 3 24 24 H 1.09003 * 109.47168 * 53.93908 * 1 2 3 25 25 H 1.00898 * 111.00265 * 104.21640 * 4 2 1 26 26 H 1.09004 * 109.47269 * 186.19882 * 7 5 4 27 27 H 1.09000 * 109.47542 * 306.19798 * 7 5 4 28 28 H 1.09007 * 109.46970 * 66.20200 * 7 5 4 29 29 H 0.96998 * 120.00262 * 179.97438 * 11 10 8 30 30 H 1.09000 * 109.46771 * 302.46567 * 16 2 1 31 31 H 1.08999 * 109.47116 * 300.00245 * 17 16 2 32 32 H 1.09005 * 109.47479 * 60.00056 * 17 16 2 33 33 H 1.08999 * 109.47440 * 300.00185 * 18 17 16 34 34 H 1.09003 * 109.47074 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.47509 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.47131 * 60.00285 * 19 18 17 37 37 H 1.08997 * 109.46644 * 300.00036 * 20 19 18 38 38 H 1.08998 * 109.47291 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47212 * 300.00087 * 21 16 2 40 40 H 1.08999 * 109.46857 * 59.99938 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.0574 0.0966 1.8761 6 1 3.6486 0.6324 1.1335 7 6 2.3980 1.1005 2.8239 8 6 3.9544 -0.8233 2.6636 9 1 3.7721 -1.8878 2.6613 10 6 5.0086 -0.3061 3.3863 11 7 5.2311 0.9901 3.3888 12 14 6.1201 -1.4463 4.3631 13 1 5.6592 -2.8481 4.1977 14 1 7.5146 -1.3215 3.8684 15 1 6.0696 -1.0754 5.8001 16 6 2.0399 -0.7213 -1.2493 17 6 3.5686 -0.7752 -1.2187 18 6 4.0785 -1.4971 -2.4676 19 6 3.6198 -0.7415 -3.7164 20 6 2.0910 -0.6875 -3.7470 21 6 1.5812 0.0348 -2.4977 22 1 -0.3634 0.4172 0.9392 23 1 -0.3634 -1.0218 -0.1084 24 1 -0.3634 0.6049 -0.8308 25 1 2.3582 -1.6153 0.9713 26 1 3.1591 1.7590 3.2426 27 1 1.6672 1.6935 2.2740 28 1 1.8979 0.5642 3.6305 29 1 5.9724 1.3540 3.8975 30 1 1.6409 -1.7354 -1.2716 31 1 3.9676 0.2389 -1.1963 32 1 3.8955 -1.3140 -0.3292 33 1 3.6795 -2.5112 -2.4896 34 1 5.1676 -1.5359 -2.4456 35 1 3.9826 -1.2559 -4.6062 36 1 4.0188 0.2726 -3.6945 37 1 1.6921 -1.7016 -3.7689 38 1 1.7642 -0.1488 -4.6364 39 1 0.4920 0.0733 -2.5195 40 1 1.9802 1.0489 -2.4753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052337619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = -53.313948 kcal Electronic energy + Delta-G solvation = -16628.742961 eV Core-core repulsion = 14248.006461 eV Total energy + Delta-G solvation = -2380.736500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23378 -37.40212 -35.08221 -32.82127 -31.58371 -29.95398 -28.83011 -27.18770 -24.12755 -23.24240 -22.05600 -21.16405 -20.55924 -18.40772 -17.02030 -16.54953 -15.78756 -15.34973 -15.23068 -14.93084 -14.69981 -14.29500 -14.01926 -13.50541 -13.38677 -13.29870 -12.93882 -12.81442 -12.64270 -12.32659 -12.27893 -12.19744 -12.12422 -11.94224 -11.81987 -11.57350 -11.27842 -10.98694 -10.86052 -10.67903 -10.56237 -8.89742 -8.12640 -6.25309 1.38906 1.40963 1.52412 2.41011 3.16347 3.66530 3.74362 3.88841 3.95016 4.26253 4.35907 4.47161 4.55797 4.59674 4.66882 4.72784 4.81358 4.85946 4.91351 4.96642 5.05308 5.08277 5.16740 5.20795 5.27012 5.28404 5.32856 5.34952 5.37226 5.45105 5.54697 5.59968 5.64153 5.75597 5.90114 6.22976 6.55834 6.86147 7.08573 7.45103 8.93640 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.007950 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.257214 B = 3520.997927 C = 4134.631125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.083 3.917 3 H 0.035 0.965 4 N -0.684 5.684 5 C 0.223 3.777 6 H -0.027 1.027 7 C -0.111 4.111 8 C -0.532 4.532 9 H 0.056 0.944 10 C 0.014 3.986 11 N -0.919 5.919 12 Si 0.958 3.042 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.109 4.109 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.331 0.669 26 H 0.051 0.949 27 H 0.020 0.980 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 -3.456 -13.212 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.027 4.027 3 H 0.053 0.947 4 N -0.314 5.314 5 C 0.114 3.886 6 H -0.010 1.010 7 C -0.169 4.169 8 C -0.571 4.571 9 H 0.074 0.926 10 C -0.185 4.185 11 N -0.558 5.558 12 Si 0.783 3.217 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.113 4.113 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.147 4.147 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.149 0.851 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.255 -3.088 -12.719 14.506 hybrid contribution 1.706 -0.228 0.456 1.780 sum -4.549 -3.316 -12.264 13.494 Atomic orbital electron populations 1.21745 0.93839 1.01835 1.00943 1.21694 0.96196 0.96155 0.88683 0.94670 1.60749 1.40274 1.05545 1.24850 1.18879 0.87016 0.91398 0.91281 1.00960 1.21546 0.97997 0.98665 0.98728 1.21622 1.11958 0.93704 1.29792 0.92583 1.25698 0.98865 0.96432 0.97548 1.70047 1.30634 1.12535 1.42619 0.85513 0.78445 0.79365 0.78353 1.19069 1.20700 1.20653 1.21648 0.94496 0.99939 0.95199 1.21539 0.96167 0.99366 0.98095 1.21493 0.99939 0.99410 0.94274 1.21535 0.96551 1.00042 0.97303 1.21521 0.95003 1.01066 0.97432 1.21588 1.01130 0.98411 0.93553 0.94038 0.92263 0.91181 0.85134 0.93060 0.96139 0.95733 0.92998 0.90674 0.94886 0.93965 0.91347 0.92796 0.90635 0.93026 0.91335 0.90641 0.90373 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.05 71.98 0.65 -3.07 16 2 C 0.08 2.96 2.09 44.91 0.09 3.05 16 3 H 0.03 1.43 7.31 -2.39 -0.02 1.41 16 4 N -0.68 -29.47 5.87 -473.32 -2.78 -32.25 16 5 C 0.22 11.57 1.74 44.17 0.08 11.64 16 6 H -0.03 -1.56 7.03 -2.39 -0.02 -1.57 16 7 C -0.11 -5.77 9.13 71.98 0.66 -5.11 16 8 C -0.53 -29.74 8.59 25.60 0.22 -29.52 16 9 H 0.06 3.09 7.61 -2.91 -0.02 3.06 16 10 C 0.01 0.76 5.30 84.65 0.45 1.21 16 11 N -0.92 -54.00 11.39 21.45 0.24 -53.76 16 12 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 C -0.09 -2.78 1.59 -10.80 -0.02 -2.80 16 17 C -0.11 -3.88 4.24 30.59 0.13 -3.75 16 18 C -0.11 -3.05 5.92 30.59 0.18 -2.86 16 19 C -0.12 -2.57 5.92 30.59 0.18 -2.39 16 20 C -0.11 -2.25 5.93 30.61 0.18 -2.07 16 21 C -0.11 -2.61 4.91 30.61 0.15 -2.46 16 22 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 1.70 6.81 -2.39 -0.02 1.69 16 25 H 0.33 14.09 6.69 -89.70 -0.60 13.49 16 26 H 0.05 2.89 6.26 -2.39 -0.01 2.87 16 27 H 0.02 0.94 7.92 -2.39 -0.02 0.93 16 28 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.04 1.70 6.54 -2.38 -0.02 1.68 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.64 6.63 -2.39 -0.02 1.62 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -60.10 301.31 2.83 -57.27 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.38 Total: 20.55 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 2.96 Total: -38.12 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.53 Total: -86.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.10 2.83 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052337619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.957 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds